Wall clock time and date at job start Tue Mar 31 2020 15:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86806 * 119.99549 * 2 1 4 4 H 1.48495 * 109.47107 * 270.34957 * 3 2 1 5 5 H 1.48495 * 109.47016 * 30.35043 * 3 2 1 6 6 H 1.48497 * 109.46752 * 150.35033 * 3 2 1 7 7 C 1.40212 * 120.00606 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99546 * 345.93182 * 7 2 1 9 9 C 1.40771 * 120.00245 * 165.94322 * 7 2 1 10 10 C 1.40758 * 120.33969 * 327.42158 * 9 7 2 11 11 C 1.36465 * 120.00097 * 180.28003 * 10 9 7 12 12 C 1.38935 * 120.73347 * 359.72682 * 11 10 9 13 13 C 1.38060 * 120.69538 * 359.97243 * 12 11 10 14 14 C 1.39390 * 119.96481 * 0.02645 * 13 12 11 15 15 C 1.47279 * 120.35494 * 180.02562 * 14 13 12 16 16 N 1.32216 * 126.59114 * 354.33774 * 15 14 13 17 17 C 1.34819 * 105.50765 * 180.02562 * 16 15 14 18 18 C 1.48389 * 126.29512 * 180.02562 * 17 16 15 19 19 C 1.39327 * 120.12024 * 179.97438 * 18 17 16 20 20 C 1.38190 * 119.87522 * 179.71877 * 19 18 17 21 21 F 1.35101 * 119.93735 * 180.27834 * 20 19 18 22 22 C 1.38569 * 120.12814 * 0.29883 * 20 19 18 23 23 C 1.38207 * 120.24712 * 359.97438 * 22 20 19 24 24 C 1.38303 * 120.11985 * 359.97438 * 23 22 20 25 25 F 1.35100 * 120.06815 * 179.97438 * 24 23 22 26 26 N 1.30949 * 107.41066 * 0.26096 * 17 16 15 27 27 O 1.21279 * 110.37170 * 359.53554 * 26 17 16 28 28 H 0.96991 * 120.00318 * 359.97438 * 1 2 3 29 29 H 1.07993 * 119.99797 * 0.02562 * 10 9 7 30 30 H 1.08002 * 119.63172 * 179.74140 * 11 10 9 31 31 H 1.07995 * 119.65201 * 180.02562 * 12 11 10 32 32 H 1.08002 * 120.01527 * 180.02562 * 13 12 11 33 33 H 1.07997 * 120.06221 * 359.97438 * 19 18 17 34 34 H 1.08007 * 119.87612 * 179.97438 * 22 20 19 35 35 H 1.08002 * 119.94586 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6179 0.0000 4 1 2.4807 2.0508 -1.4000 5 1 1.4418 2.6505 0.7074 6 1 3.5419 1.4382 0.6926 7 6 2.0080 -1.2142 -0.0005 8 1 1.4923 -2.1356 0.2264 9 6 3.3841 -1.2322 -0.2966 10 6 3.9282 -0.3045 -1.2046 11 6 5.2622 -0.3318 -1.4910 12 6 6.0982 -1.2652 -0.8908 13 6 5.5970 -2.1848 0.0087 14 6 4.2388 -2.1829 0.3224 15 6 3.6951 -3.1596 1.2813 16 7 4.3503 -4.1612 1.8432 17 6 3.4534 -4.7770 2.6395 18 6 3.7051 -5.9665 3.4902 19 6 2.6790 -6.5001 4.2671 20 6 2.9174 -7.6115 5.0530 21 9 1.9218 -8.1333 5.8025 22 6 4.1757 -8.1915 5.0741 23 6 5.1988 -7.6630 4.3098 24 6 4.9712 -6.5516 3.5188 25 9 5.9722 -6.0356 2.7725 26 7 2.3181 -4.1355 2.5202 27 8 2.4379 -3.2042 1.7526 28 1 -0.4850 0.8399 0.0004 29 1 3.2892 0.4264 -1.6778 30 1 5.6726 0.3801 -2.1918 31 1 7.1513 -1.2709 -1.1299 32 1 6.2569 -2.9052 0.4691 33 1 1.6981 -6.0485 4.2520 34 1 4.3576 -9.0598 5.6902 35 1 6.1775 -8.1192 4.3297 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001215611486.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:40 Heat of formation + Delta-G solvation = 24.767475 kcal Electronic energy + Delta-G solvation = -26250.706856 eV Core-core repulsion = 22045.766857 eV Total energy + Delta-G solvation = -4204.939999 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.10074 -48.79376 -44.55793 -38.95715 -38.10888 -35.13951 -33.97259 -32.92008 -31.25795 -30.67309 -30.06523 -29.28090 -25.70160 -24.72807 -23.86881 -22.56296 -21.91817 -21.33600 -20.19541 -18.13827 -17.75260 -17.45816 -17.21031 -17.12971 -16.58742 -15.94361 -15.80660 -15.33460 -15.01099 -14.84791 -14.45605 -14.17231 -14.08364 -13.80743 -13.42915 -13.14267 -12.71559 -12.61154 -12.40451 -12.35121 -12.03668 -11.75525 -11.39827 -11.29174 -11.06644 -11.04875 -10.68695 -10.39131 -10.09946 -10.03883 -9.89332 -9.41326 -9.15699 -8.61010 -7.95747 -7.73993 -7.27949 -4.85365 0.47307 0.78154 1.45263 2.38191 2.48539 2.91091 2.95919 3.11428 3.13661 3.49085 3.58880 3.69729 3.78486 3.95599 4.10019 4.25393 4.31993 4.59257 4.77630 4.94445 5.09430 5.29339 5.57823 5.70972 5.72286 5.84027 5.85380 5.87549 5.97711 6.13093 6.35870 6.46788 6.52378 6.54718 6.69154 6.85898 7.00053 7.31011 7.41795 7.54356 7.75715 8.03309 8.24450 8.38872 8.91460 9.70730 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.017883 B = 0.003540 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.382691 B = 7907.950639 C = 9287.309031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.083 3.917 3 Si 0.915 3.085 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.241 1.241 7 C -0.413 4.413 8 H 0.108 0.892 9 C 0.113 3.887 10 C -0.226 4.226 11 C -0.055 4.055 12 C -0.249 4.249 13 C -0.009 4.009 14 C -0.172 4.172 15 C 0.285 3.715 16 N -0.508 5.508 17 C 0.186 3.814 18 C -0.006 4.006 19 C -0.097 4.097 20 C 0.085 3.915 21 F -0.133 7.133 22 C -0.116 4.116 23 C -0.131 4.131 24 C 0.130 3.870 25 F -0.108 7.108 26 N -0.398 5.398 27 O 0.100 5.900 28 H 0.294 0.706 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.113 0.887 33 H 0.153 0.847 34 H 0.148 0.852 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.781 -8.537 6.046 12.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.141 4.141 3 Si 0.740 3.260 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.164 1.164 7 C -0.440 4.440 8 H 0.126 0.874 9 C 0.108 3.892 10 C -0.244 4.244 11 C -0.074 4.074 12 C -0.268 4.268 13 C -0.028 4.028 14 C -0.177 4.177 15 C 0.076 3.924 16 N -0.243 5.243 17 C -0.083 4.083 18 C -0.009 4.009 19 C -0.117 4.117 20 C 0.066 3.934 21 F -0.112 7.112 22 C -0.135 4.135 23 C -0.150 4.150 24 C 0.109 3.891 25 F -0.086 7.086 26 N -0.108 5.108 27 O 0.039 5.961 28 H 0.105 0.895 29 H 0.129 0.871 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.131 0.869 33 H 0.171 0.829 34 H 0.166 0.834 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.095 -8.954 6.580 12.674 hybrid contribution 0.068 0.854 -0.166 0.873 sum 6.163 -8.100 6.414 12.030 Atomic orbital electron populations 1.69578 1.08351 1.31299 1.30294 1.26355 0.94899 1.02107 0.90745 0.86267 0.81128 0.78888 0.79690 1.18853 1.21222 1.16351 1.19883 0.91640 0.96471 1.35963 0.87445 1.17591 0.92650 0.89844 0.89113 1.20886 0.95552 1.04345 1.03663 1.20585 0.93609 0.96355 0.96807 1.20363 0.98662 1.01837 1.05950 1.20735 0.92738 0.95500 0.93868 1.17071 0.93190 1.02966 1.04494 1.26236 0.79830 0.92757 0.93537 1.72345 1.29378 1.08785 1.13796 1.23185 0.87235 0.98376 0.99553 1.17192 0.92741 0.93323 0.97654 1.21047 1.00456 0.95075 0.95155 1.17382 0.85901 0.95086 0.95027 1.91527 1.59823 1.85740 1.74106 1.21054 0.90897 1.01139 1.00427 1.20926 1.00987 0.95700 0.97396 1.17624 0.84620 0.93792 0.93106 1.91626 1.57876 1.85652 1.73482 1.74793 1.22347 1.01624 1.12078 1.85643 1.31375 1.36534 1.42499 0.89529 0.87110 0.88045 0.87742 0.86914 0.82914 0.83423 0.83071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.83 13.92 55.56 0.77 -18.06 16 2 C 0.08 1.98 5.45 -17.30 -0.09 1.88 16 3 Si 0.92 18.73 24.51 -169.99 -4.17 14.56 16 4 H -0.26 -5.08 6.55 56.52 0.37 -4.71 16 5 H -0.29 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.24 -5.07 6.94 56.52 0.39 -4.68 16 7 C -0.41 -10.28 8.43 -37.88 -0.32 -10.59 16 8 H 0.11 2.87 6.14 -52.49 -0.32 2.55 16 9 C 0.11 2.66 5.10 -106.53 -0.54 2.11 16 10 C -0.23 -4.84 7.11 -39.27 -0.28 -5.12 16 11 C -0.05 -1.04 9.96 -39.96 -0.40 -1.44 16 12 C -0.25 -4.67 10.03 -39.39 -0.39 -5.07 16 13 C -0.01 -0.17 9.70 -39.22 -0.38 -0.55 16 14 C -0.17 -3.92 5.93 -104.34 -0.62 -4.54 16 15 C 0.29 6.56 7.83 -13.93 -0.11 6.45 16 16 N -0.51 -11.09 9.95 -10.24 -0.10 -11.19 16 17 C 0.19 3.81 7.77 -156.34 -1.22 2.60 16 18 C -0.01 -0.10 5.88 -104.84 -0.62 -0.72 16 19 C -0.10 -1.36 9.67 -39.19 -0.38 -1.74 16 20 C 0.09 1.00 7.29 -39.48 -0.29 0.72 16 21 F -0.13 -1.58 17.26 2.25 0.04 -1.54 16 22 C -0.12 -1.09 10.01 -39.47 -0.40 -1.48 16 23 C -0.13 -1.34 10.01 -39.57 -0.40 -1.74 16 24 C 0.13 1.87 7.28 -39.08 -0.28 1.59 16 25 F -0.11 -1.77 15.79 2.25 0.04 -1.74 16 26 N -0.40 -8.73 11.84 31.27 0.37 -8.36 16 27 O 0.10 2.35 8.48 16.30 0.14 2.49 16 28 H 0.29 6.39 8.29 -40.82 -0.34 6.05 16 29 H 0.11 2.31 4.66 -52.49 -0.24 2.06 16 30 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 32 H 0.11 2.17 7.89 -52.49 -0.41 1.75 16 33 H 0.15 2.17 7.86 -52.49 -0.41 1.76 16 34 H 0.15 0.92 8.06 -52.48 -0.42 0.50 16 35 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 316.86 15.07 4.78 4.78 Total: -1.00 -26.47 316.86 -7.11 -33.58 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -2.26 Total: 3.13 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -6.71 Total: -17.64 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 1.04 Total: -37.61 kcal Atomic # 8 Polarization: 2.35 SS G_CDS: 0.14 Total: 2.49 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.07 Total: -3.28 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -4.17 Total: 14.56 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -26.47 -7.11 -33.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215611486.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.347 kcal (2) G-P(sol) polarization free energy of solvation -26.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds