Wall clock time and date at job start Tue Mar 31 2020 15:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86806 * 119.99549 * 2 1 4 4 H 1.48495 * 109.47107 * 270.34957 * 3 2 1 5 5 H 1.48495 * 109.47016 * 30.35043 * 3 2 1 6 6 H 1.48497 * 109.46752 * 150.35033 * 3 2 1 7 7 C 1.40212 * 120.00606 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99546 * 345.93182 * 7 2 1 9 9 C 1.40771 * 120.00245 * 165.94322 * 7 2 1 10 10 C 1.40758 * 120.33969 * 327.42158 * 9 7 2 11 11 C 1.36465 * 120.00097 * 180.28003 * 10 9 7 12 12 C 1.38935 * 120.73347 * 359.72682 * 11 10 9 13 13 C 1.38060 * 120.69538 * 359.97243 * 12 11 10 14 14 C 1.39390 * 119.96481 * 0.02645 * 13 12 11 15 15 C 1.47279 * 120.35494 * 180.02562 * 14 13 12 16 16 N 1.32216 * 126.59114 * 354.33774 * 15 14 13 17 17 C 1.34819 * 105.50765 * 180.02562 * 16 15 14 18 18 C 1.48389 * 126.29512 * 180.02562 * 17 16 15 19 19 C 1.39327 * 120.12024 * 179.97438 * 18 17 16 20 20 C 1.38190 * 119.87522 * 179.71877 * 19 18 17 21 21 F 1.35101 * 119.93735 * 180.27834 * 20 19 18 22 22 C 1.38569 * 120.12814 * 0.29883 * 20 19 18 23 23 C 1.38207 * 120.24712 * 359.97438 * 22 20 19 24 24 C 1.38303 * 120.11985 * 359.97438 * 23 22 20 25 25 F 1.35100 * 120.06815 * 179.97438 * 24 23 22 26 26 N 1.30949 * 107.41066 * 0.26096 * 17 16 15 27 27 O 1.21279 * 110.37170 * 359.53554 * 26 17 16 28 28 H 0.96991 * 120.00318 * 359.97438 * 1 2 3 29 29 H 1.07993 * 119.99797 * 0.02562 * 10 9 7 30 30 H 1.08002 * 119.63172 * 179.74140 * 11 10 9 31 31 H 1.07995 * 119.65201 * 180.02562 * 12 11 10 32 32 H 1.08002 * 120.01527 * 180.02562 * 13 12 11 33 33 H 1.07997 * 120.06221 * 359.97438 * 19 18 17 34 34 H 1.08007 * 119.87612 * 179.97438 * 22 20 19 35 35 H 1.08002 * 119.94586 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6179 0.0000 4 1 2.4807 2.0508 -1.4000 5 1 1.4418 2.6505 0.7074 6 1 3.5419 1.4382 0.6926 7 6 2.0080 -1.2142 -0.0005 8 1 1.4923 -2.1356 0.2264 9 6 3.3841 -1.2322 -0.2966 10 6 3.9282 -0.3045 -1.2046 11 6 5.2622 -0.3318 -1.4910 12 6 6.0982 -1.2652 -0.8908 13 6 5.5970 -2.1848 0.0087 14 6 4.2388 -2.1829 0.3224 15 6 3.6951 -3.1596 1.2813 16 7 4.3503 -4.1612 1.8432 17 6 3.4534 -4.7770 2.6395 18 6 3.7051 -5.9665 3.4902 19 6 2.6790 -6.5001 4.2671 20 6 2.9174 -7.6115 5.0530 21 9 1.9218 -8.1333 5.8025 22 6 4.1757 -8.1915 5.0741 23 6 5.1988 -7.6630 4.3098 24 6 4.9712 -6.5516 3.5188 25 9 5.9722 -6.0356 2.7725 26 7 2.3181 -4.1355 2.5202 27 8 2.4379 -3.2042 1.7526 28 1 -0.4850 0.8399 0.0004 29 1 3.2892 0.4264 -1.6778 30 1 5.6726 0.3801 -2.1918 31 1 7.1513 -1.2709 -1.1299 32 1 6.2569 -2.9052 0.4691 33 1 1.6981 -6.0485 4.2520 34 1 4.3576 -9.0598 5.6902 35 1 6.1775 -8.1192 4.3297 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001215611486.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:39 Heat of formation + Delta-G solvation = 10.256993 kcal Electronic energy + Delta-G solvation = -26251.336078 eV Core-core repulsion = 22045.766857 eV Total energy + Delta-G solvation = -4205.569221 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.05445 -49.96451 -46.23902 -40.00346 -39.76973 -36.74838 -35.70342 -34.43758 -32.67920 -32.17297 -31.13715 -30.88591 -27.42557 -26.02655 -25.37389 -23.78620 -23.38100 -22.93446 -21.71209 -19.70100 -19.21269 -18.91004 -18.54845 -18.23404 -17.99040 -17.40612 -16.97467 -16.65266 -16.42583 -16.14055 -15.78315 -15.52158 -15.43258 -15.11374 -14.87238 -14.38322 -14.16793 -14.07288 -13.71934 -13.65476 -13.63190 -13.41193 -12.93490 -12.70516 -12.56761 -12.39383 -12.26752 -12.08198 -11.75108 -11.66001 -11.52535 -11.05644 -10.28698 -9.72749 -9.63197 -9.39908 -9.03345 -6.67703 -0.67432 -0.22940 -0.19766 0.75818 0.95069 1.26118 1.37173 1.48965 1.57925 1.98519 2.09714 2.28096 2.30640 2.54039 2.83983 3.01841 3.13669 3.37015 3.51996 3.73050 3.89310 4.13728 4.23433 4.32614 4.42424 4.61567 4.68037 4.73768 4.78799 4.81833 4.88926 4.89794 4.94719 5.00785 5.17726 5.35131 5.57577 5.68940 5.73991 5.88942 6.05974 6.24670 6.52201 6.59424 7.19466 8.02191 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.017883 B = 0.003540 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.382691 B = 7907.950639 C = 9287.309031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.050 3.950 3 Si 0.966 3.034 4 H -0.237 1.237 5 H -0.277 1.277 6 H -0.250 1.250 7 C -0.452 4.452 8 H 0.069 0.931 9 C 0.104 3.896 10 C -0.241 4.241 11 C -0.045 4.045 12 C -0.227 4.227 13 C -0.019 4.019 14 C -0.191 4.191 15 C 0.272 3.728 16 N -0.513 5.513 17 C 0.197 3.803 18 C -0.046 4.046 19 C -0.104 4.104 20 C 0.088 3.912 21 F -0.132 7.132 22 C -0.083 4.083 23 C -0.108 4.108 24 C 0.117 3.883 25 F -0.125 7.125 26 N -0.422 5.422 27 O 0.067 5.933 28 H 0.302 0.698 29 H 0.117 0.883 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.123 0.877 33 H 0.138 0.862 34 H 0.197 0.803 35 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.492 -9.547 6.467 15.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.170 4.170 3 Si 0.787 3.213 4 H -0.161 1.161 5 H -0.203 1.203 6 H -0.174 1.174 7 C -0.480 4.480 8 H 0.087 0.913 9 C 0.099 3.901 10 C -0.260 4.260 11 C -0.064 4.064 12 C -0.246 4.246 13 C -0.039 4.039 14 C -0.196 4.196 15 C 0.062 3.938 16 N -0.248 5.248 17 C -0.074 4.074 18 C -0.049 4.049 19 C -0.125 4.125 20 C 0.068 3.932 21 F -0.111 7.111 22 C -0.101 4.101 23 C -0.126 4.126 24 C 0.095 3.905 25 F -0.103 7.103 26 N -0.137 5.137 27 O 0.014 5.986 28 H 0.113 0.887 29 H 0.135 0.865 30 H 0.164 0.836 31 H 0.164 0.836 32 H 0.141 0.859 33 H 0.156 0.844 34 H 0.214 0.786 35 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 9.794 -9.942 6.967 15.599 hybrid contribution -0.883 0.895 -0.204 1.274 sum 8.911 -9.047 6.764 14.388 Atomic orbital electron populations 1.69609 1.09556 1.32473 1.32696 1.27055 0.95457 1.04515 0.89929 0.85516 0.79390 0.75442 0.80923 1.16142 1.20332 1.17354 1.19769 0.92848 0.95896 1.39444 0.91349 1.17777 0.92120 0.90755 0.89455 1.21060 0.97098 1.04280 1.03561 1.21084 0.92405 0.96508 0.96406 1.20903 1.00646 0.99665 1.03348 1.20980 0.91669 0.96560 0.94688 1.17472 0.94478 1.02980 1.04671 1.26609 0.79888 0.93366 0.93896 1.72334 1.29621 1.08678 1.14198 1.23958 0.86240 0.98651 0.98539 1.17320 0.94795 0.93369 0.99417 1.20963 0.99493 0.96230 0.95830 1.17466 0.86990 0.94327 0.94414 1.91539 1.60121 1.85496 1.73913 1.21574 0.88805 1.01017 0.98748 1.21363 1.02934 0.93346 0.94973 1.18003 0.83408 0.95096 0.93993 1.91579 1.58304 1.86205 1.74208 1.74764 1.23478 1.02325 1.13169 1.85631 1.32000 1.37530 1.43438 0.88694 0.86538 0.83558 0.83588 0.85917 0.84381 0.78637 0.78870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.55 13.92 21.87 0.30 -42.25 16 2 C 0.05 2.49 5.45 85.34 0.46 2.96 16 3 Si 0.97 38.81 24.51 68.60 1.68 40.49 16 4 H -0.24 -8.47 6.55 99.48 0.65 -7.82 16 5 H -0.28 -10.59 7.11 99.48 0.71 -9.88 16 6 H -0.25 -10.30 6.94 99.48 0.69 -9.61 16 7 C -0.45 -24.25 8.43 23.37 0.20 -24.05 16 8 H 0.07 4.10 6.14 -2.91 -0.02 4.08 16 9 C 0.10 5.03 5.10 -21.10 -0.11 4.93 16 10 C -0.24 -10.07 7.11 22.47 0.16 -9.91 16 11 C -0.05 -1.56 9.96 22.02 0.22 -1.34 16 12 C -0.23 -7.65 10.03 22.39 0.22 -7.43 16 13 C -0.02 -0.77 9.70 22.51 0.22 -0.55 16 14 C -0.19 -8.98 5.93 -19.68 -0.12 -9.10 16 15 C 0.27 13.34 7.83 87.09 0.68 14.02 16 16 N -0.51 -23.51 9.95 -301.97 -3.01 -26.51 16 17 C 0.20 8.55 7.77 137.36 1.07 9.62 16 18 C -0.05 -1.55 5.88 -20.00 -0.12 -1.67 16 19 C -0.10 -2.98 9.67 22.52 0.22 -2.76 16 20 C 0.09 1.86 7.29 22.34 0.16 2.02 16 21 F -0.13 -2.84 17.26 44.97 0.78 -2.07 16 22 C -0.08 -1.16 10.01 22.34 0.22 -0.93 16 23 C -0.11 -1.75 10.01 22.28 0.22 -1.52 16 24 C 0.12 3.21 7.28 22.59 0.16 3.37 16 25 F -0.12 -4.00 15.79 44.97 0.71 -3.29 16 26 N -0.42 -20.20 11.84 -57.32 -0.68 -20.88 16 27 O 0.07 3.50 8.48 68.38 0.58 4.08 16 28 H 0.30 13.88 8.29 -92.71 -0.77 13.11 16 29 H 0.12 4.68 4.66 -2.91 -0.01 4.67 16 30 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 31 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 32 H 0.12 4.58 7.89 -2.91 -0.02 4.56 16 33 H 0.14 4.25 7.86 -2.91 -0.02 4.22 16 34 H 0.20 1.02 8.06 -2.91 -0.02 1.00 16 35 H 0.19 1.59 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -64.72 316.86 5.36 -59.36 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 1.11 Total: 13.42 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: 3.88 Total: -22.35 kcal Atomic # 7 Polarization: -86.27 SS G_CDS: -3.38 Total: -89.65 kcal Atomic # 8 Polarization: 3.50 SS G_CDS: 0.58 Total: 4.08 kcal Atomic # 9 Polarization: -6.84 SS G_CDS: 1.49 Total: -5.36 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 1.68 Total: 40.49 kcal Total: -64.72 5.36 -59.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215611486.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.618 kcal (2) G-P(sol) polarization free energy of solvation -64.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds