Wall clock time and date at job start Tue Mar 31 2020 15:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86805 * 119.99788 * 2 1 4 4 H 1.48506 * 109.46786 * 269.99532 * 3 2 1 5 5 H 1.48495 * 109.47014 * 29.99551 * 3 2 1 6 6 H 1.48505 * 109.47208 * 149.99865 * 3 2 1 7 7 C 1.39929 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00492 * 197.88550 * 7 2 1 9 9 C 1.41434 * 120.00172 * 17.89191 * 7 2 1 10 10 C 1.40798 * 120.17848 * 204.49201 * 9 7 2 11 11 C 1.37712 * 120.03429 * 179.97438 * 10 9 7 12 12 C 1.38373 * 120.41335 * 359.72298 * 11 10 9 13 13 C 1.39889 * 120.35376 * 0.55434 * 12 11 10 14 14 C 1.47875 * 120.02273 * 179.72190 * 13 12 11 15 15 N 1.31944 * 126.55914 * 359.72118 * 14 13 12 16 16 C 1.34959 * 105.51186 * 179.97438 * 15 14 13 17 17 C 1.48394 * 126.32329 * 179.97438 * 16 15 14 18 18 C 1.39369 * 120.12284 * 180.02562 * 17 16 15 19 19 C 1.37969 * 119.95103 * 179.97438 * 18 17 16 20 20 C 1.38362 * 120.19696 * 359.97438 * 19 18 17 21 21 C 1.38414 * 120.24740 * 0.02562 * 20 19 18 22 22 F 1.35099 * 119.97684 * 180.02562 * 21 20 19 23 23 C 1.38528 * 120.04400 * 359.78954 * 21 20 19 24 24 F 1.35099 * 120.09496 * 180.25917 * 23 21 20 25 25 N 1.30861 * 107.35601 * 0.02562 * 16 15 14 26 26 O 1.21273 * 110.32621 * 359.97438 * 25 16 15 27 27 C 1.39017 * 119.95341 * 359.44732 * 13 12 11 28 28 H 0.96995 * 120.00288 * 0.02562 * 1 2 3 29 29 H 1.07993 * 119.97954 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.79396 * 179.97438 * 11 10 9 31 31 H 1.07999 * 119.82770 * 180.30363 * 12 11 10 32 32 H 1.07998 * 120.02271 * 0.02562 * 18 17 16 33 33 H 1.08004 * 119.90003 * 180.02562 * 19 18 17 34 34 H 1.07995 * 119.87585 * 180.02562 * 20 19 18 35 35 H 1.07995 * 120.20543 * 180.30109 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4898 2.0464 -1.4002 5 1 1.4396 2.6527 0.6999 6 1 3.5398 1.4403 0.7001 7 6 2.0080 -1.2118 0.0005 8 1 3.0488 -1.2343 0.2878 9 6 1.3522 -2.4072 -0.3752 10 6 1.8259 -3.6498 0.0874 11 6 1.1848 -4.8120 -0.2799 12 6 0.0704 -4.7684 -1.0990 13 6 -0.4111 -3.5435 -1.5730 14 6 -1.5990 -3.5059 -2.4529 15 7 -2.2980 -4.5426 -2.8744 16 6 -3.2792 -4.0274 -3.6445 17 6 -4.3340 -4.7934 -4.3535 18 6 -5.2887 -4.1257 -5.1184 19 6 -6.2675 -4.8415 -5.7766 20 6 -6.3042 -6.2213 -5.6802 21 6 -5.3601 -6.8927 -4.9228 22 9 -5.4009 -8.2401 -4.8328 23 6 -4.3706 -6.1844 -4.2608 24 9 -3.4455 -6.8391 -3.5255 25 7 -3.1281 -2.7275 -3.6514 26 8 -2.1724 -2.4109 -2.9752 27 6 0.2244 -2.3611 -1.2116 28 1 -0.4850 0.8400 -0.0004 29 1 2.6924 -3.6915 0.7305 30 1 1.5517 -5.7630 0.0768 31 1 -0.4280 -5.6853 -1.3772 32 1 -5.2618 -3.0489 -5.1966 33 1 -7.0067 -4.3233 -6.3695 34 1 -7.0724 -6.7764 -6.1979 35 1 -0.1468 -1.4129 -1.5712 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216540592.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:58 Heat of formation + Delta-G solvation = 24.669256 kcal Electronic energy + Delta-G solvation = -25852.903854 eV Core-core repulsion = 21647.959595 eV Total energy + Delta-G solvation = -4204.944258 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.57161 -48.59658 -45.02472 -39.19589 -37.78294 -35.49343 -33.99359 -32.91181 -30.97044 -30.68021 -29.86219 -29.20283 -25.58474 -24.86444 -24.07858 -22.69655 -22.35335 -20.88008 -20.33232 -18.31296 -17.72030 -17.65667 -17.43060 -17.22318 -16.45525 -16.43528 -15.45326 -15.19512 -15.01207 -14.87422 -14.84689 -14.53645 -14.19800 -13.57490 -13.20288 -12.88228 -12.75324 -12.68401 -12.35422 -12.11031 -12.02091 -11.70311 -11.60147 -11.39281 -11.23427 -10.94554 -10.71724 -10.56829 -10.19690 -9.93037 -9.83231 -9.32799 -9.06400 -8.95256 -7.66785 -7.65412 -6.92903 -4.54226 0.29253 0.63713 1.27017 2.28950 2.67385 2.97696 3.01721 3.04512 3.13011 3.20931 3.30879 3.33000 3.66335 3.83046 4.08080 4.17171 4.39428 4.44848 4.59764 4.78118 5.03511 5.39864 5.42140 5.50069 5.63345 5.75195 5.80216 6.00562 6.08091 6.21622 6.35075 6.41438 6.59812 6.81477 6.89676 7.07088 7.19405 7.55545 7.68574 7.77941 7.97323 8.33848 8.48168 8.65529 8.68884 10.02338 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.021676 B = 0.002915 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.469786 B = 9603.428917 C =10811.692046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.458 4.458 8 H 0.084 0.916 9 C 0.101 3.899 10 C -0.197 4.197 11 C -0.097 4.097 12 C -0.184 4.184 13 C -0.036 4.036 14 C 0.276 3.724 15 N -0.481 5.481 16 C 0.194 3.806 17 C -0.016 4.016 18 C -0.068 4.068 19 C -0.104 4.104 20 C -0.113 4.113 21 C 0.061 3.939 22 F -0.125 7.125 23 C 0.109 3.891 24 F -0.101 7.101 25 N -0.383 5.383 26 O 0.087 5.913 27 C -0.111 4.111 28 H 0.285 0.715 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.593 -5.849 -9.509 15.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.487 4.487 8 H 0.102 0.898 9 C 0.098 3.902 10 C -0.217 4.217 11 C -0.115 4.115 12 C -0.205 4.205 13 C -0.039 4.039 14 C 0.062 3.938 15 N -0.214 5.214 16 C -0.076 4.076 17 C -0.018 4.018 18 C -0.088 4.088 19 C -0.122 4.122 20 C -0.133 4.133 21 C 0.041 3.959 22 F -0.104 7.104 23 C 0.087 3.913 24 F -0.079 7.079 25 N -0.092 5.092 26 O 0.026 5.974 27 C -0.133 4.133 28 H 0.096 0.904 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.125 0.875 32 H 0.166 0.834 33 H 0.165 0.835 34 H 0.167 0.833 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.406 -5.651 -9.934 16.147 hybrid contribution 0.550 0.446 0.341 0.786 sum -10.856 -5.204 -9.593 15.394 Atomic orbital electron populations 1.69760 1.07625 1.29865 1.34146 1.25948 0.94782 1.01600 0.92069 0.86251 0.80444 0.80261 0.79504 1.19090 1.20201 1.18504 1.19592 0.98371 0.90866 1.39821 0.89826 1.17483 0.90915 0.92606 0.89173 1.21231 1.03135 0.92626 1.04753 1.20490 0.95654 0.97172 0.98215 1.20365 1.00116 0.94855 1.05189 1.17213 0.91044 0.96245 0.99387 1.27004 0.94992 0.78835 0.92998 1.72402 1.06315 1.28028 1.14667 1.23338 0.96929 0.87955 0.99422 1.17263 0.95070 0.89509 0.99999 1.21213 0.92222 1.01460 0.93954 1.20984 0.98779 0.92787 0.99694 1.21216 0.98262 0.95262 0.98558 1.17496 0.97999 0.77846 1.02537 1.91547 1.96025 1.27894 1.94924 1.17595 0.89243 0.89367 0.95098 1.91653 1.62573 1.80161 1.73499 1.74778 1.05171 1.14903 1.14301 1.85390 1.30483 1.35415 1.46089 1.21598 0.97831 0.95499 0.98363 0.90371 0.88096 0.88108 0.87514 0.83402 0.83474 0.83271 0.84977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.18 10.96 55.55 0.61 -18.57 16 2 C 0.07 1.75 5.14 -17.35 -0.09 1.66 16 3 Si 0.91 17.57 29.60 -169.99 -5.03 12.54 16 4 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 6 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 7 C -0.46 -11.18 9.05 -37.73 -0.34 -11.52 16 8 H 0.08 1.95 7.91 -52.49 -0.41 1.53 16 9 C 0.10 2.48 5.57 -106.87 -0.60 1.88 16 10 C -0.20 -4.41 9.78 -38.81 -0.38 -4.79 16 11 C -0.10 -2.02 10.01 -39.72 -0.40 -2.42 16 12 C -0.18 -4.00 9.71 -38.91 -0.38 -4.38 16 13 C -0.04 -0.82 5.87 -105.05 -0.62 -1.44 16 14 C 0.28 5.98 8.00 -13.80 -0.11 5.87 16 15 N -0.48 -10.05 9.92 -10.22 -0.10 -10.15 16 16 C 0.19 3.62 7.78 -156.28 -1.22 2.40 16 17 C -0.02 -0.23 5.88 -104.84 -0.62 -0.85 16 18 C -0.07 -0.75 9.69 -39.26 -0.38 -1.13 16 19 C -0.10 -0.81 10.03 -39.63 -0.40 -1.21 16 20 C -0.11 -0.95 10.01 -39.47 -0.40 -1.34 16 21 C 0.06 0.73 7.30 -39.41 -0.29 0.44 16 22 F -0.13 -1.56 17.18 2.25 0.04 -1.52 16 23 C 0.11 1.61 7.28 -39.02 -0.28 1.33 16 24 F -0.10 -1.76 15.71 2.25 0.04 -1.72 16 25 N -0.38 -7.36 11.84 31.20 0.37 -6.99 16 26 O 0.09 1.83 11.10 16.68 0.19 2.01 16 27 C -0.11 -2.70 8.37 -38.45 -0.32 -3.03 16 28 H 0.29 6.34 8.30 -40.82 -0.34 6.00 16 29 H 0.10 2.08 8.06 -52.49 -0.42 1.65 16 30 H 0.10 1.79 8.06 -52.49 -0.42 1.36 16 31 H 0.11 2.22 7.86 -52.49 -0.41 1.81 16 32 H 0.15 1.51 7.86 -52.49 -0.41 1.10 16 33 H 0.15 0.64 8.06 -52.48 -0.42 0.21 16 34 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.13 3.31 6.03 -52.49 -0.32 2.99 16 LS Contribution 327.27 15.07 4.93 4.93 Total: -1.00 -26.96 327.27 -8.15 -35.11 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -2.38 Total: 2.89 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -6.81 Total: -18.52 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.88 Total: -35.72 kcal Atomic # 8 Polarization: 1.83 SS G_CDS: 0.19 Total: 2.01 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.07 Total: -3.24 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.54 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -26.96 -8.15 -35.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216540592.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.781 kcal (2) G-P(sol) polarization free energy of solvation -26.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds