Wall clock time and date at job start Tue Mar 31 2020 15:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86805 * 119.99788 * 2 1 4 4 H 1.48506 * 109.46786 * 269.99532 * 3 2 1 5 5 H 1.48495 * 109.47014 * 29.99551 * 3 2 1 6 6 H 1.48505 * 109.47208 * 149.99865 * 3 2 1 7 7 C 1.39929 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00492 * 197.88550 * 7 2 1 9 9 C 1.41434 * 120.00172 * 17.89191 * 7 2 1 10 10 C 1.40798 * 120.17848 * 204.49201 * 9 7 2 11 11 C 1.37712 * 120.03429 * 179.97438 * 10 9 7 12 12 C 1.38373 * 120.41335 * 359.72298 * 11 10 9 13 13 C 1.39889 * 120.35376 * 0.55434 * 12 11 10 14 14 C 1.47875 * 120.02273 * 179.72190 * 13 12 11 15 15 N 1.31944 * 126.55914 * 359.72118 * 14 13 12 16 16 C 1.34959 * 105.51186 * 179.97438 * 15 14 13 17 17 C 1.48394 * 126.32329 * 179.97438 * 16 15 14 18 18 C 1.39369 * 120.12284 * 180.02562 * 17 16 15 19 19 C 1.37969 * 119.95103 * 179.97438 * 18 17 16 20 20 C 1.38362 * 120.19696 * 359.97438 * 19 18 17 21 21 C 1.38414 * 120.24740 * 0.02562 * 20 19 18 22 22 F 1.35099 * 119.97684 * 180.02562 * 21 20 19 23 23 C 1.38528 * 120.04400 * 359.78954 * 21 20 19 24 24 F 1.35099 * 120.09496 * 180.25917 * 23 21 20 25 25 N 1.30861 * 107.35601 * 0.02562 * 16 15 14 26 26 O 1.21273 * 110.32621 * 359.97438 * 25 16 15 27 27 C 1.39017 * 119.95341 * 359.44732 * 13 12 11 28 28 H 0.96995 * 120.00288 * 0.02562 * 1 2 3 29 29 H 1.07993 * 119.97954 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.79396 * 179.97438 * 11 10 9 31 31 H 1.07999 * 119.82770 * 180.30363 * 12 11 10 32 32 H 1.07998 * 120.02271 * 0.02562 * 18 17 16 33 33 H 1.08004 * 119.90003 * 180.02562 * 19 18 17 34 34 H 1.07995 * 119.87585 * 180.02562 * 20 19 18 35 35 H 1.07995 * 120.20543 * 180.30109 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4898 2.0464 -1.4002 5 1 1.4396 2.6527 0.6999 6 1 3.5398 1.4403 0.7001 7 6 2.0080 -1.2118 0.0005 8 1 3.0488 -1.2343 0.2878 9 6 1.3522 -2.4072 -0.3752 10 6 1.8259 -3.6498 0.0874 11 6 1.1848 -4.8120 -0.2799 12 6 0.0704 -4.7684 -1.0990 13 6 -0.4111 -3.5435 -1.5730 14 6 -1.5990 -3.5059 -2.4529 15 7 -2.2980 -4.5426 -2.8744 16 6 -3.2792 -4.0274 -3.6445 17 6 -4.3340 -4.7934 -4.3535 18 6 -5.2887 -4.1257 -5.1184 19 6 -6.2675 -4.8415 -5.7766 20 6 -6.3042 -6.2213 -5.6802 21 6 -5.3601 -6.8927 -4.9228 22 9 -5.4009 -8.2401 -4.8328 23 6 -4.3706 -6.1844 -4.2608 24 9 -3.4455 -6.8391 -3.5255 25 7 -3.1281 -2.7275 -3.6514 26 8 -2.1724 -2.4109 -2.9752 27 6 0.2244 -2.3611 -1.2116 28 1 -0.4850 0.8400 -0.0004 29 1 2.6924 -3.6915 0.7305 30 1 1.5517 -5.7630 0.0768 31 1 -0.4280 -5.6853 -1.3772 32 1 -5.2618 -3.0489 -5.1966 33 1 -7.0067 -4.3233 -6.3695 34 1 -7.0724 -6.7764 -6.1979 35 1 -0.1468 -1.4129 -1.5712 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216540592.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:57 Heat of formation + Delta-G solvation = 11.575577 kcal Electronic energy + Delta-G solvation = -25853.471638 eV Core-core repulsion = 21647.959595 eV Total energy + Delta-G solvation = -4205.512043 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.59268 -49.66858 -46.57111 -40.10037 -39.54720 -37.00220 -35.72575 -34.43240 -32.15157 -31.68127 -31.53615 -30.79717 -27.34668 -26.09263 -25.58333 -23.80368 -23.66605 -22.60590 -21.83034 -19.70311 -19.21889 -19.09981 -18.68884 -18.22511 -17.77964 -17.46186 -17.13056 -16.54985 -16.35131 -16.09189 -15.99602 -15.83896 -15.36166 -15.21737 -14.60832 -14.34693 -14.05147 -13.88172 -13.79281 -13.71240 -13.21774 -13.13667 -12.88372 -12.79500 -12.64564 -12.61097 -12.29363 -12.14601 -11.77144 -11.65722 -11.55900 -11.05063 -10.08386 -9.92828 -9.47987 -9.39370 -8.68481 -6.39717 -0.77762 -0.34178 -0.23566 0.87768 0.95180 1.39225 1.42551 1.55100 1.57454 1.61287 2.12372 2.21281 2.29024 2.50020 2.68609 2.85936 3.24610 3.45800 3.60322 3.70117 3.78180 4.04387 4.24657 4.41090 4.46670 4.56505 4.66983 4.71060 4.84168 4.85816 4.97192 5.03084 5.07186 5.13718 5.28604 5.41603 5.55959 5.77231 5.90857 5.98105 6.19375 6.51872 6.84140 6.86036 6.90144 8.28821 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.021676 B = 0.002915 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.469786 B = 9603.428917 C =10811.692046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.036 3.964 3 Si 0.982 3.018 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.254 1.254 7 C -0.487 4.487 8 H 0.088 0.912 9 C 0.075 3.925 10 C -0.203 4.203 11 C -0.090 4.090 12 C -0.186 4.186 13 C -0.041 4.041 14 C 0.264 3.736 15 N -0.494 5.494 16 C 0.202 3.798 17 C -0.052 4.052 18 C -0.063 4.063 19 C -0.078 4.078 20 C -0.084 4.084 21 C 0.054 3.946 22 F -0.132 7.132 23 C 0.079 3.921 24 F -0.129 7.129 25 N -0.387 5.387 26 O 0.067 5.933 27 C -0.134 4.134 28 H 0.290 0.710 29 H 0.118 0.882 30 H 0.139 0.861 31 H 0.115 0.885 32 H 0.155 0.845 33 H 0.199 0.801 34 H 0.194 0.806 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.477 -6.272 -11.133 17.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.516 4.516 8 H 0.106 0.894 9 C 0.072 3.928 10 C -0.223 4.223 11 C -0.108 4.108 12 C -0.207 4.207 13 C -0.044 4.044 14 C 0.049 3.951 15 N -0.227 5.227 16 C -0.068 4.068 17 C -0.055 4.055 18 C -0.083 4.083 19 C -0.095 4.095 20 C -0.103 4.103 21 C 0.034 3.966 22 F -0.110 7.110 23 C 0.056 3.944 24 F -0.107 7.107 25 N -0.098 5.098 26 O 0.011 5.989 27 C -0.156 4.156 28 H 0.101 0.899 29 H 0.136 0.864 30 H 0.156 0.844 31 H 0.133 0.867 32 H 0.173 0.827 33 H 0.216 0.784 34 H 0.211 0.789 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -13.272 -6.071 -11.545 18.609 hybrid contribution 0.936 0.415 0.725 1.254 sum -12.336 -5.656 -10.820 17.356 Atomic orbital electron populations 1.69829 1.09077 1.30952 1.34849 1.26774 0.95416 1.04682 0.91118 0.85195 0.79212 0.75876 0.79472 1.18878 1.19572 1.17759 1.19864 0.98774 0.91783 1.41206 0.89409 1.17846 0.91401 0.93873 0.89644 1.21498 1.03658 0.92378 1.04760 1.20855 0.94649 0.98333 0.96976 1.20604 1.00419 0.94665 1.05017 1.17370 0.91309 0.96335 0.99397 1.26914 0.95225 0.79430 0.93525 1.72403 1.07015 1.28058 1.15235 1.24037 0.96725 0.87917 0.98130 1.17471 0.96009 0.89572 1.02436 1.21488 0.91775 1.02045 0.93034 1.21542 0.97721 0.92475 0.97766 1.21781 0.97018 0.95614 0.95892 1.17755 0.98199 0.77648 1.03028 1.91532 1.96057 1.28403 1.95045 1.17983 0.90221 0.89648 0.96505 1.91567 1.63914 1.80662 1.74563 1.74739 1.05028 1.15263 1.14800 1.85371 1.31203 1.35572 1.46737 1.21457 0.98940 0.95351 0.99834 0.89887 0.86396 0.84352 0.86697 0.82733 0.78415 0.78883 0.86676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.52 10.96 21.82 0.24 -41.28 16 2 C 0.04 1.72 5.14 85.25 0.44 2.16 16 3 Si 0.98 36.47 29.60 68.60 2.03 38.50 16 4 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 5 H -0.27 -9.71 7.11 99.48 0.71 -9.00 16 6 H -0.25 -9.06 7.11 99.48 0.71 -8.35 16 7 C -0.49 -24.52 9.05 23.47 0.21 -24.31 16 8 H 0.09 4.17 7.91 -2.91 -0.02 4.15 16 9 C 0.07 3.80 5.57 -21.32 -0.12 3.68 16 10 C -0.20 -9.11 9.78 22.77 0.22 -8.89 16 11 C -0.09 -3.70 10.01 22.18 0.22 -3.48 16 12 C -0.19 -8.21 9.71 22.70 0.22 -7.99 16 13 C -0.04 -1.98 5.87 -20.14 -0.12 -2.10 16 14 C 0.26 12.05 8.00 87.31 0.70 12.75 16 15 N -0.49 -21.50 9.92 -302.31 -3.00 -24.50 16 16 C 0.20 7.79 7.78 137.34 1.07 8.86 16 17 C -0.05 -1.54 5.88 -20.01 -0.12 -1.65 16 18 C -0.06 -1.23 9.69 22.48 0.22 -1.02 16 19 C -0.08 -0.80 10.03 22.24 0.22 -0.58 16 20 C -0.08 -0.99 10.01 22.34 0.22 -0.76 16 21 C 0.05 1.16 7.30 22.38 0.16 1.33 16 22 F -0.13 -3.08 17.18 44.97 0.77 -2.31 16 23 C 0.08 2.31 7.28 22.63 0.16 2.48 16 24 F -0.13 -4.68 15.71 44.97 0.71 -3.97 16 25 N -0.39 -15.39 11.84 -57.75 -0.68 -16.07 16 26 O 0.07 2.98 11.10 69.76 0.77 3.75 16 27 C -0.13 -6.87 8.37 23.00 0.19 -6.68 16 28 H 0.29 13.39 8.30 -92.71 -0.77 12.62 16 29 H 0.12 4.79 8.06 -2.91 -0.02 4.76 16 30 H 0.14 4.58 8.06 -2.91 -0.02 4.56 16 31 H 0.11 4.83 7.86 -2.91 -0.02 4.81 16 32 H 0.15 2.79 7.86 -2.91 -0.02 2.77 16 33 H 0.20 0.20 8.06 -2.91 -0.02 0.18 16 34 H 0.19 0.68 8.06 -2.91 -0.02 0.65 16 35 H 0.12 6.19 6.03 -2.91 -0.02 6.18 16 Total: -1.00 -63.62 327.27 5.92 -57.70 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 1.17 Total: 14.38 kcal Atomic # 6 Polarization: -30.11 SS G_CDS: 3.91 Total: -26.20 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: -3.44 Total: -81.85 kcal Atomic # 8 Polarization: 2.98 SS G_CDS: 0.77 Total: 3.75 kcal Atomic # 9 Polarization: -7.76 SS G_CDS: 1.48 Total: -6.28 kcal Atomic # 14 Polarization: 36.47 SS G_CDS: 2.03 Total: 38.50 kcal Total: -63.62 5.92 -57.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216540592.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.273 kcal (2) G-P(sol) polarization free energy of solvation -63.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds