Wall clock time and date at job start Tue Mar 31 2020 15:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30703 * 1 3 3 Si 1.86797 * 120.00131 * 2 1 4 4 H 1.48496 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47401 * 300.00732 * 3 2 1 6 6 H 1.48501 * 109.46962 * 60.00161 * 3 2 1 7 7 C 1.40150 * 119.99857 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00096 * 197.93089 * 7 2 1 9 9 C 1.40965 * 119.99978 * 17.93138 * 7 2 1 10 10 C 1.40962 * 120.10237 * 24.69352 * 9 7 2 11 11 C 1.36207 * 119.90125 * 180.02562 * 10 9 7 12 12 C 1.40126 * 120.10014 * 359.97438 * 11 10 9 13 13 C 1.47448 * 119.89866 * 179.97438 * 12 11 10 14 14 N 1.32161 * 126.57771 * 180.29043 * 13 12 11 15 15 C 1.34827 * 105.50877 * 180.11187 * 14 13 12 16 16 C 1.48390 * 126.30131 * 179.88243 * 15 14 13 17 17 C 1.39324 * 120.12445 * 179.71613 * 16 15 14 18 18 C 1.38188 * 119.88068 * 179.74777 * 17 16 15 19 19 F 1.35103 * 119.94309 * 180.25429 * 18 17 16 20 20 C 1.38580 * 120.12467 * 0.28124 * 18 17 16 21 21 C 1.38207 * 120.24497 * 359.95091 * 20 18 17 22 22 C 1.38307 * 120.12074 * 0.02562 * 21 20 18 23 23 F 1.35098 * 120.06318 * 180.02562 * 22 21 20 24 24 N 1.30944 * 107.40365 * 359.62817 * 15 14 13 25 25 O 1.21276 * 110.35331 * 0.23341 * 24 15 14 26 26 C 1.40127 * 120.19925 * 0.26095 * 12 11 10 27 27 C 1.36206 * 120.10076 * 359.47489 * 26 12 11 28 28 H 0.97001 * 119.99919 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.04881 * 0.02562 * 10 9 7 30 30 H 1.07994 * 119.94991 * 180.02562 * 11 10 9 31 31 H 1.08000 * 120.05849 * 0.02827 * 17 16 15 32 32 H 1.08001 * 119.87709 * 179.97438 * 20 18 17 33 33 H 1.08006 * 119.94313 * 180.02562 * 21 20 18 34 34 H 1.08004 * 119.94881 * 179.71998 * 26 12 11 35 35 H 1.08002 * 120.04921 * 180.25255 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 3.7010 1.3463 -0.0006 5 1 1.8822 2.3965 -1.2124 6 1 1.8823 2.3964 1.2125 7 6 2.0078 -1.2138 -0.0005 8 1 3.0484 -1.2366 0.2874 9 6 1.3542 -2.4047 -0.3769 10 6 0.2261 -2.3558 -1.2207 11 6 -0.4025 -3.5091 -1.5814 12 6 0.0709 -4.7429 -1.1154 13 6 -0.6133 -5.9885 -1.5082 14 7 -0.2852 -7.2158 -1.1441 15 6 -1.1843 -8.0223 -1.7434 16 6 -1.2392 -9.5020 -1.6464 17 6 -2.2330 -10.2104 -2.3184 18 6 -2.2763 -11.5887 -2.2288 19 9 -3.2364 -12.2772 -2.8841 20 6 -1.3371 -12.2660 -1.4675 21 6 -0.3519 -11.5681 -0.7948 22 6 -0.2988 -10.1885 -0.8779 23 9 0.6651 -9.5076 -0.2203 24 7 -2.0035 -7.2591 -2.4224 25 8 -1.6930 -6.0931 -2.3000 26 6 1.1891 -4.7960 -0.2725 27 6 1.8272 -3.6482 0.0890 28 1 -0.4850 0.8401 0.0004 29 1 -0.1392 -1.4054 -1.5806 30 1 -1.2666 -3.4726 -2.2281 31 1 -2.9655 -9.6836 -2.9120 32 1 -1.3749 -13.3432 -1.3999 33 1 0.3779 -12.1010 -0.2032 34 1 1.5478 -5.7488 0.0879 35 1 2.6913 -3.6905 0.7354 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216639243.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:43 Heat of formation + Delta-G solvation = 18.508854 kcal Electronic energy + Delta-G solvation = -25395.579876 eV Core-core repulsion = 21190.368482 eV Total energy + Delta-G solvation = -4205.211394 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.18489 -48.85943 -44.74200 -39.04629 -37.86415 -35.28827 -34.34186 -32.71381 -31.16366 -30.21417 -29.78313 -29.53071 -26.09524 -24.87326 -23.70924 -22.49895 -21.99060 -20.95871 -20.33810 -18.16927 -17.69397 -17.54203 -17.44198 -17.20776 -16.69629 -16.02671 -15.70153 -15.40556 -15.20098 -14.80251 -14.52510 -14.19449 -14.06433 -13.59695 -13.37886 -12.93136 -12.73714 -12.47978 -12.32435 -12.17296 -12.05202 -11.71802 -11.46283 -11.37161 -11.34032 -11.16125 -10.89070 -10.43113 -10.12823 -10.05157 -9.70850 -9.47962 -9.20145 -8.67643 -7.88952 -7.59640 -7.22228 -4.76137 0.36504 0.69853 1.42920 2.36614 2.73545 2.86308 2.90940 2.92123 3.13220 3.41473 3.44812 3.58277 3.61720 3.86682 4.01132 4.22801 4.29104 4.51225 4.67247 4.86490 5.20087 5.36721 5.49167 5.63540 5.65404 5.78276 5.85861 6.05830 6.12064 6.32190 6.42232 6.55024 6.62283 6.68799 6.86193 6.98103 7.27545 7.50720 7.67635 7.71886 7.86981 8.21151 8.42770 8.54803 8.72682 9.67862 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.035177 B = 0.002319 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.783562 B =12072.726234 C =12785.904368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.070 3.930 3 Si 0.917 3.083 4 H -0.255 1.255 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.422 4.422 8 H 0.090 0.910 9 C 0.128 3.872 10 C -0.175 4.175 11 C -0.051 4.051 12 C -0.202 4.202 13 C 0.286 3.714 14 N -0.509 5.509 15 C 0.198 3.802 16 C -0.012 4.012 17 C -0.096 4.096 18 C 0.085 3.915 19 F -0.133 7.133 20 C -0.113 4.113 21 C -0.131 4.131 22 C 0.133 3.867 23 F -0.107 7.107 24 N -0.400 5.400 25 O 0.060 5.940 26 C -0.015 4.015 27 C -0.233 4.233 28 H 0.291 0.709 29 H 0.125 0.875 30 H 0.101 0.899 31 H 0.152 0.848 32 H 0.149 0.851 33 H 0.153 0.847 34 H 0.106 0.894 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.525 -13.729 -1.834 13.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C -0.153 4.153 3 Si 0.740 3.260 4 H -0.179 1.179 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.449 4.449 8 H 0.108 0.892 9 C 0.124 3.876 10 C -0.194 4.194 11 C -0.071 4.071 12 C -0.207 4.207 13 C 0.079 3.921 14 N -0.243 5.243 15 C -0.072 4.072 16 C -0.014 4.014 17 C -0.117 4.117 18 C 0.065 3.935 19 F -0.112 7.112 20 C -0.133 4.133 21 C -0.150 4.150 22 C 0.111 3.889 23 F -0.085 7.085 24 N -0.114 5.114 25 O 0.003 5.997 26 C -0.035 4.035 27 C -0.253 4.253 28 H 0.102 0.898 29 H 0.142 0.858 30 H 0.119 0.881 31 H 0.170 0.830 32 H 0.167 0.833 33 H 0.170 0.830 34 H 0.125 0.875 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.178 -14.179 -2.073 14.495 hybrid contribution 0.176 0.905 0.042 0.923 sum -2.003 -13.274 -2.032 13.578 Atomic orbital electron populations 1.69764 1.08032 1.30572 1.29614 1.26203 0.94906 1.02301 0.91877 0.86094 0.81098 0.79729 0.79096 1.17858 1.19158 1.19461 1.19994 0.98591 0.91144 1.35182 0.89161 1.17869 0.90351 0.92292 0.87077 1.20960 0.99704 0.96929 1.01854 1.20472 0.97621 0.91596 0.97390 1.16638 1.03554 0.85293 1.15246 1.26717 0.84219 0.94715 0.86485 1.72388 1.26127 0.98987 1.26844 1.23239 0.91977 0.95141 0.96844 1.17188 0.96765 0.87314 1.00161 1.21014 0.98658 0.92262 0.99723 1.17378 0.89612 0.89335 0.97161 1.91529 1.61410 1.79192 1.79051 1.21081 0.93989 1.01349 0.96856 1.20958 1.00522 0.91526 1.01980 1.17642 0.87692 0.89705 0.93816 1.91643 1.59588 1.79687 1.77541 1.74735 1.23190 0.89823 1.23676 1.85299 1.39571 1.21166 1.53679 1.20324 0.92292 0.97685 0.93246 1.20685 1.04550 0.92303 1.07755 0.89798 0.85764 0.88135 0.83003 0.83342 0.82954 0.87543 0.87789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.06 10.96 55.56 0.61 -16.45 16 2 C 0.07 1.53 5.13 -17.31 -0.09 1.44 16 3 Si 0.92 16.08 29.60 -169.99 -5.03 11.05 16 4 H -0.26 -4.45 7.11 56.52 0.40 -4.05 16 5 H -0.27 -4.63 7.11 56.52 0.40 -4.23 16 6 H -0.27 -4.69 7.11 56.52 0.40 -4.29 16 7 C -0.42 -9.72 9.03 -37.83 -0.34 -10.06 16 8 H 0.09 1.97 7.91 -52.49 -0.42 1.55 16 9 C 0.13 3.04 5.57 -106.80 -0.60 2.45 16 10 C -0.18 -4.08 8.63 -39.28 -0.34 -4.42 16 11 C -0.05 -1.11 9.66 -39.60 -0.38 -1.49 16 12 C -0.20 -4.44 5.89 -104.73 -0.62 -5.06 16 13 C 0.29 6.09 7.98 -13.88 -0.11 5.98 16 14 N -0.51 -10.63 9.91 -10.23 -0.10 -10.73 16 15 C 0.20 3.77 7.77 -156.33 -1.22 2.55 16 16 C -0.01 -0.18 5.88 -104.84 -0.62 -0.79 16 17 C -0.10 -1.23 9.67 -39.20 -0.38 -1.61 16 18 C 0.08 0.91 7.29 -39.47 -0.29 0.62 16 19 F -0.13 -1.44 17.26 2.25 0.04 -1.41 16 20 C -0.11 -0.98 10.02 -39.47 -0.40 -1.37 16 21 C -0.13 -1.26 10.01 -39.57 -0.40 -1.65 16 22 C 0.13 1.82 7.28 -39.08 -0.28 1.54 16 23 F -0.11 -1.71 15.79 2.25 0.04 -1.67 16 24 N -0.40 -7.78 11.84 31.25 0.37 -7.41 16 25 O 0.06 1.22 11.09 16.40 0.18 1.40 16 26 C -0.02 -0.34 9.63 -39.60 -0.38 -0.72 16 27 C -0.23 -5.20 9.73 -39.28 -0.38 -5.58 16 28 H 0.29 5.84 8.29 -40.82 -0.34 5.50 16 29 H 0.12 2.93 6.16 -52.49 -0.32 2.60 16 30 H 0.10 2.00 7.92 -52.49 -0.42 1.58 16 31 H 0.15 1.91 7.86 -52.49 -0.41 1.50 16 32 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.15 1.02 8.06 -52.48 -0.42 0.60 16 34 H 0.11 2.20 7.85 -52.48 -0.41 1.79 16 35 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 327.12 15.07 4.93 4.93 Total: -1.00 -25.65 327.12 -8.16 -33.81 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -2.38 Total: 4.66 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -6.81 Total: -18.18 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.88 Total: -34.60 kcal Atomic # 8 Polarization: 1.22 SS G_CDS: 0.18 Total: 1.40 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.07 Total: -3.08 kcal Atomic # 14 Polarization: 16.08 SS G_CDS: -5.03 Total: 11.05 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -25.65 -8.16 -33.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216639243.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.317 kcal (2) G-P(sol) polarization free energy of solvation -25.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds