Wall clock time and date at job start Tue Mar 31 2020 15:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30703 * 1 3 3 Si 1.86797 * 120.00131 * 2 1 4 4 H 1.48496 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47401 * 300.00732 * 3 2 1 6 6 H 1.48501 * 109.46962 * 60.00161 * 3 2 1 7 7 C 1.40150 * 119.99857 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00096 * 197.93089 * 7 2 1 9 9 C 1.40965 * 119.99978 * 17.93138 * 7 2 1 10 10 C 1.40962 * 120.10237 * 24.69352 * 9 7 2 11 11 C 1.36207 * 119.90125 * 180.02562 * 10 9 7 12 12 C 1.40126 * 120.10014 * 359.97438 * 11 10 9 13 13 C 1.47448 * 119.89866 * 179.97438 * 12 11 10 14 14 N 1.32161 * 126.57771 * 180.29043 * 13 12 11 15 15 C 1.34827 * 105.50877 * 180.11187 * 14 13 12 16 16 C 1.48390 * 126.30131 * 179.88243 * 15 14 13 17 17 C 1.39324 * 120.12445 * 179.71613 * 16 15 14 18 18 C 1.38188 * 119.88068 * 179.74777 * 17 16 15 19 19 F 1.35103 * 119.94309 * 180.25429 * 18 17 16 20 20 C 1.38580 * 120.12467 * 0.28124 * 18 17 16 21 21 C 1.38207 * 120.24497 * 359.95091 * 20 18 17 22 22 C 1.38307 * 120.12074 * 0.02562 * 21 20 18 23 23 F 1.35098 * 120.06318 * 180.02562 * 22 21 20 24 24 N 1.30944 * 107.40365 * 359.62817 * 15 14 13 25 25 O 1.21276 * 110.35331 * 0.23341 * 24 15 14 26 26 C 1.40127 * 120.19925 * 0.26095 * 12 11 10 27 27 C 1.36206 * 120.10076 * 359.47489 * 26 12 11 28 28 H 0.97001 * 119.99919 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.04881 * 0.02562 * 10 9 7 30 30 H 1.07994 * 119.94991 * 180.02562 * 11 10 9 31 31 H 1.08000 * 120.05849 * 0.02827 * 17 16 15 32 32 H 1.08001 * 119.87709 * 179.97438 * 20 18 17 33 33 H 1.08006 * 119.94313 * 180.02562 * 21 20 18 34 34 H 1.08004 * 119.94881 * 179.71998 * 26 12 11 35 35 H 1.08002 * 120.04921 * 180.25255 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 3.7010 1.3463 -0.0006 5 1 1.8822 2.3965 -1.2124 6 1 1.8823 2.3964 1.2125 7 6 2.0078 -1.2138 -0.0005 8 1 3.0484 -1.2366 0.2874 9 6 1.3542 -2.4047 -0.3769 10 6 0.2261 -2.3558 -1.2207 11 6 -0.4025 -3.5091 -1.5814 12 6 0.0709 -4.7429 -1.1154 13 6 -0.6133 -5.9885 -1.5082 14 7 -0.2852 -7.2158 -1.1441 15 6 -1.1843 -8.0223 -1.7434 16 6 -1.2392 -9.5020 -1.6464 17 6 -2.2330 -10.2104 -2.3184 18 6 -2.2763 -11.5887 -2.2288 19 9 -3.2364 -12.2772 -2.8841 20 6 -1.3371 -12.2660 -1.4675 21 6 -0.3519 -11.5681 -0.7948 22 6 -0.2988 -10.1885 -0.8779 23 9 0.6651 -9.5076 -0.2203 24 7 -2.0035 -7.2591 -2.4224 25 8 -1.6930 -6.0931 -2.3000 26 6 1.1891 -4.7960 -0.2725 27 6 1.8272 -3.6482 0.0890 28 1 -0.4850 0.8401 0.0004 29 1 -0.1392 -1.4054 -1.5806 30 1 -1.2666 -3.4726 -2.2281 31 1 -2.9655 -9.6836 -2.9120 32 1 -1.3749 -13.3432 -1.3999 33 1 0.3779 -12.1010 -0.2032 34 1 1.5478 -5.7488 0.0879 35 1 2.6913 -3.6905 0.7354 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216639243.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:42 Heat of formation + Delta-G solvation = 7.240916 kcal Electronic energy + Delta-G solvation = -25396.068490 eV Core-core repulsion = 21190.368482 eV Total energy + Delta-G solvation = -4205.700008 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.04337 -49.96850 -46.30203 -39.99414 -39.59878 -36.79940 -35.99174 -34.15851 -32.41885 -31.53707 -31.19628 -31.08753 -27.79305 -26.06311 -25.09893 -23.71877 -23.35811 -22.66840 -21.82844 -19.45866 -19.35358 -19.01355 -18.55158 -18.20844 -18.01818 -17.30844 -16.97126 -16.70689 -16.42198 -15.99628 -15.80872 -15.43974 -15.32221 -15.02103 -14.55242 -14.23826 -14.04901 -13.82533 -13.72594 -13.65503 -13.65051 -13.33095 -12.93202 -12.81775 -12.58511 -12.40664 -12.38534 -11.97749 -11.72216 -11.61515 -11.41779 -11.06116 -10.26857 -9.71027 -9.64957 -9.32853 -8.86792 -6.51990 -0.69611 -0.20462 -0.17053 0.92395 1.13436 1.34654 1.42392 1.57905 1.66842 1.88342 2.15089 2.28092 2.29686 2.61455 2.81809 3.02358 3.14351 3.52819 3.59515 3.73074 3.90130 4.12664 4.32388 4.36001 4.42029 4.68120 4.75243 4.81156 4.84028 4.90982 4.92974 4.96877 5.00169 5.12593 5.23539 5.53740 5.57658 5.75749 5.92828 5.95584 6.12592 6.46512 6.68250 6.79183 7.13900 8.07039 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.035177 B = 0.002319 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.783562 B =12072.726234 C =12785.904368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.035 3.965 3 Si 0.990 3.010 4 H -0.252 1.252 5 H -0.262 1.262 6 H -0.264 1.264 7 C -0.446 4.446 8 H 0.097 0.903 9 C 0.103 3.897 10 C -0.192 4.192 11 C -0.050 4.050 12 C -0.211 4.211 13 C 0.279 3.721 14 N -0.521 5.521 15 C 0.203 3.797 16 C -0.048 4.048 17 C -0.099 4.099 18 C 0.087 3.913 19 F -0.131 7.131 20 C -0.083 4.083 21 C -0.111 4.111 22 C 0.114 3.886 23 F -0.127 7.127 24 N -0.409 5.409 25 O 0.051 5.949 26 C -0.017 4.017 27 C -0.242 4.242 28 H 0.301 0.699 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.145 0.855 32 H 0.194 0.806 33 H 0.190 0.810 34 H 0.115 0.885 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.125 -15.827 -1.550 15.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.186 4.186 3 Si 0.810 3.190 4 H -0.175 1.175 5 H -0.186 1.186 6 H -0.188 1.188 7 C -0.473 4.473 8 H 0.115 0.885 9 C 0.099 3.901 10 C -0.212 4.212 11 C -0.070 4.070 12 C -0.216 4.216 13 C 0.070 3.930 14 N -0.255 5.255 15 C -0.068 4.068 16 C -0.051 4.051 17 C -0.120 4.120 18 C 0.068 3.932 19 F -0.110 7.110 20 C -0.102 4.102 21 C -0.129 4.129 22 C 0.093 3.907 23 F -0.105 7.105 24 N -0.125 5.125 25 O -0.003 6.003 26 C -0.037 4.037 27 C -0.262 4.262 28 H 0.112 0.888 29 H 0.135 0.865 30 H 0.133 0.867 31 H 0.163 0.837 32 H 0.211 0.789 33 H 0.207 0.793 34 H 0.133 0.867 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.794 -16.278 -1.797 16.475 hybrid contribution -0.042 1.307 -0.064 1.310 sum -1.837 -14.970 -1.861 15.197 Atomic orbital electron populations 1.69789 1.09441 1.32102 1.29618 1.27044 0.95540 1.05224 0.90808 0.85011 0.79638 0.75156 0.79231 1.17538 1.18650 1.18814 1.20288 0.99079 0.91882 1.36013 0.88545 1.18193 0.90922 0.93271 0.87696 1.20956 1.00453 0.96988 1.02760 1.20614 0.97830 0.91310 0.97254 1.16759 1.03793 0.85677 1.15368 1.26651 0.84649 0.94764 0.86969 1.72379 1.26833 0.99093 1.27223 1.23903 0.90662 0.96896 0.95297 1.17310 0.99221 0.85404 1.03163 1.20965 0.98048 0.93421 0.99575 1.17456 0.90018 0.88499 0.97250 1.91544 1.61494 1.78875 1.79086 1.21566 0.91558 1.03319 0.93792 1.21348 1.00903 0.89483 1.01203 1.18052 0.87285 0.91277 0.94101 1.91589 1.60385 1.80471 1.78062 1.74707 1.23708 0.89550 1.24537 1.85281 1.39415 1.21834 1.53749 1.20430 0.92224 0.97911 0.93135 1.20860 1.05134 0.92088 1.08102 0.88794 0.86536 0.86691 0.83672 0.78868 0.79278 0.86738 0.86465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -35.91 10.96 21.86 0.24 -35.67 16 2 C 0.03 1.51 5.13 85.33 0.44 1.94 16 3 Si 0.99 32.50 29.60 68.60 2.03 34.53 16 4 H -0.25 -8.08 7.11 99.48 0.71 -7.37 16 5 H -0.26 -8.34 7.11 99.48 0.71 -7.64 16 6 H -0.26 -8.35 7.11 99.48 0.71 -7.64 16 7 C -0.45 -20.88 9.03 23.40 0.21 -20.67 16 8 H 0.10 4.24 7.91 -2.91 -0.02 4.21 16 9 C 0.10 5.04 5.57 -21.28 -0.12 4.92 16 10 C -0.19 -9.27 8.63 22.46 0.19 -9.08 16 11 C -0.05 -2.26 9.66 22.25 0.21 -2.05 16 12 C -0.21 -9.56 5.89 -19.93 -0.12 -9.67 16 13 C 0.28 12.20 7.98 87.15 0.70 12.89 16 14 N -0.52 -22.24 9.91 -302.02 -2.99 -25.23 16 15 C 0.20 7.86 7.77 137.36 1.07 8.92 16 16 C -0.05 -1.45 5.88 -20.00 -0.12 -1.57 16 17 C -0.10 -2.45 9.67 22.52 0.22 -2.23 16 18 C 0.09 1.61 7.29 22.34 0.16 1.78 16 19 F -0.13 -2.46 17.26 44.97 0.78 -1.68 16 20 C -0.08 -1.04 10.02 22.34 0.22 -0.81 16 21 C -0.11 -1.68 10.01 22.28 0.22 -1.46 16 22 C 0.11 2.97 7.28 22.59 0.16 3.13 16 23 F -0.13 -4.02 15.79 44.97 0.71 -3.31 16 24 N -0.41 -16.33 11.84 -57.42 -0.68 -17.01 16 25 O 0.05 2.14 11.09 68.76 0.76 2.90 16 26 C -0.02 -0.77 9.63 22.25 0.21 -0.55 16 27 C -0.24 -11.07 9.73 22.46 0.22 -10.85 16 28 H 0.30 12.13 8.29 -92.71 -0.77 11.36 16 29 H 0.12 5.71 6.16 -2.91 -0.02 5.70 16 30 H 0.12 4.72 7.92 -2.91 -0.02 4.70 16 31 H 0.15 3.67 7.86 -2.91 -0.02 3.64 16 32 H 0.19 0.80 8.06 -2.91 -0.02 0.77 16 33 H 0.19 1.52 8.06 -2.91 -0.02 1.49 16 34 H 0.11 4.84 7.85 -2.91 -0.02 4.82 16 35 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -57.83 327.12 5.91 -51.92 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 1.17 Total: 18.91 kcal Atomic # 6 Polarization: -29.24 SS G_CDS: 3.89 Total: -25.35 kcal Atomic # 7 Polarization: -74.48 SS G_CDS: -3.43 Total: -77.92 kcal Atomic # 8 Polarization: 2.14 SS G_CDS: 0.76 Total: 2.90 kcal Atomic # 9 Polarization: -6.47 SS G_CDS: 1.49 Total: -4.99 kcal Atomic # 14 Polarization: 32.50 SS G_CDS: 2.03 Total: 34.53 kcal Total: -57.83 5.91 -51.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216639243.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.164 kcal (2) G-P(sol) polarization free energy of solvation -57.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds