Wall clock time and date at job start Tue Mar 31 2020 15:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00461 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99611 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47482 * 180.02562 * 11 10 9 13 13 O 1.42895 * 109.47606 * 180.02562 * 12 11 10 14 14 C 1.42904 * 114.00490 * 180.02562 * 13 12 11 15 15 H 1.08998 * 110.27002 * 30.61261 * 14 13 12 16 16 C 1.54340 * 110.30805 * 152.80083 * 14 13 12 17 17 C 1.54342 * 102.39550 * 145.27876 * 16 14 13 18 18 C 1.51371 * 105.17033 * 333.63933 * 17 16 14 19 19 C 1.38495 * 130.36263 * 197.17197 * 18 17 16 20 20 C 1.38193 * 120.22188 * 180.02562 * 19 18 17 21 21 Cl 1.73606 * 120.05117 * 180.02562 * 20 19 18 22 22 C 1.38484 * 119.89698 * 0.02562 * 20 19 18 23 23 Cl 1.73595 * 120.05410 * 180.02562 * 22 20 19 24 24 C 1.38190 * 119.89155 * 359.97438 * 22 20 19 25 25 C 1.38239 * 109.75741 * 17.19645 * 18 17 16 26 26 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 28 28 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 29 29 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 30 30 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 31 31 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 32 32 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 33 33 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 34 34 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 35 35 H 1.09004 * 110.81933 * 263.50644 * 16 14 13 36 36 H 1.09007 * 110.82178 * 27.04903 * 16 14 13 37 37 H 1.09000 * 110.29809 * 214.71978 * 17 16 14 38 38 H 1.08997 * 110.30239 * 92.56486 * 17 16 14 39 39 H 1.07996 * 119.89073 * 0.02562 * 19 18 17 40 40 H 1.07999 * 119.88307 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5514 -2.6367 -0.0009 12 6 6.0614 -4.0791 -0.0015 13 8 7.4904 -4.0792 -0.0008 14 6 8.0717 -5.3846 -0.0018 15 1 7.4216 -6.0870 -0.5235 16 6 9.4659 -5.3497 -0.6628 17 6 10.2466 -6.4006 0.1548 18 6 9.5674 -6.4349 1.5071 19 6 10.0084 -6.9377 2.7199 20 6 9.2033 -6.8577 3.8402 21 17 9.7609 -7.4888 5.3583 22 6 7.9510 -6.2734 3.7500 23 17 6.9366 -6.1702 5.1549 24 6 7.5107 -5.7716 2.5400 25 6 8.3175 -5.8511 1.4172 26 1 -0.4850 0.8401 0.0004 27 1 3.8751 -0.6805 0.8889 28 1 3.8745 -0.6801 -0.8910 29 1 3.6584 -3.1503 0.8892 30 1 3.6578 -3.1506 -0.8908 31 1 5.9148 -2.1229 -0.8909 32 1 5.9148 -2.1228 0.8890 33 1 5.6980 -4.5933 0.8883 34 1 5.6982 -4.5926 -0.8917 35 1 9.4051 -5.6415 -1.7113 36 1 9.9191 -4.3636 -0.5595 37 1 11.2883 -6.0984 0.2624 38 1 10.1828 -7.3770 -0.3254 39 1 10.9848 -7.3938 2.7903 40 1 6.5339 -5.3163 2.4697 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224691271.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:26 Heat of formation + Delta-G solvation = -57.672724 kcal Electronic energy + Delta-G solvation = -22290.572088 eV Core-core repulsion = 18734.961388 eV Total energy + Delta-G solvation = -3555.610701 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.074 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.84014 -38.22585 -37.04909 -36.84001 -35.33287 -34.44275 -32.32937 -31.55047 -29.48838 -29.09014 -26.93034 -24.75497 -23.47525 -21.85651 -21.47293 -21.17445 -20.03987 -17.53563 -17.13604 -16.63277 -16.43200 -16.18746 -15.50547 -14.94544 -14.67856 -14.29006 -14.18094 -14.12993 -13.66996 -13.22590 -12.70908 -12.55860 -12.46535 -12.30285 -12.15681 -11.98200 -11.95120 -11.71504 -11.59183 -11.41980 -11.23342 -11.17181 -10.91720 -10.72946 -10.67572 -9.91887 -9.72781 -9.64947 -9.58024 -9.27492 -9.16719 -8.84526 -8.52391 -6.03113 -4.01048 0.52038 0.69734 1.50146 1.84921 2.94691 3.32298 3.39690 3.44247 3.59975 3.93100 4.00511 4.38465 4.46913 4.53225 4.59791 4.76742 4.89821 4.99248 5.09483 5.21990 5.28825 5.31508 5.31652 5.38804 5.48582 5.56223 5.63893 5.67898 5.69202 5.93827 5.96653 6.03353 6.15805 6.30744 6.59734 6.69748 6.87644 7.15654 7.31550 7.44705 7.81066 8.55171 9.01718 9.59700 11.10409 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014538 B = 0.002537 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.496093 B =11036.121695 C =12479.696378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.100 4.100 11 C -0.119 4.119 12 C 0.057 3.943 13 O -0.371 6.371 14 C 0.127 3.873 15 H 0.083 0.917 16 C -0.114 4.114 17 C -0.080 4.080 18 C -0.076 4.076 19 C -0.091 4.091 20 C -0.028 4.028 21 Cl -0.050 7.050 22 C -0.032 4.032 23 Cl -0.044 7.044 24 C -0.073 4.073 25 C -0.101 4.101 26 H 0.263 0.737 27 H 0.016 0.984 28 H 0.012 0.988 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.051 0.949 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.141 0.859 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.878 -17.935 4.023 30.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.138 4.138 11 C -0.157 4.157 12 C -0.018 4.018 13 O -0.290 6.290 14 C 0.069 3.931 15 H 0.101 0.899 16 C -0.152 4.152 17 C -0.117 4.117 18 C -0.077 4.077 19 C -0.109 4.109 20 C -0.055 4.055 21 Cl -0.021 7.021 22 C -0.060 4.060 23 Cl -0.015 7.015 24 C -0.092 4.092 25 C -0.102 4.102 26 H 0.072 0.928 27 H 0.034 0.966 28 H 0.030 0.970 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.159 0.841 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 24.779 -17.690 4.294 30.747 hybrid contribution 0.008 0.617 0.453 0.766 sum 24.787 -17.073 4.747 30.470 Atomic orbital electron populations 1.69919 1.06317 1.26864 1.51294 1.25045 0.94741 0.99224 0.94582 0.86768 0.80407 0.83565 0.78505 1.20303 1.21421 1.18938 1.21165 0.89582 0.94435 1.50694 0.91086 1.19563 0.97027 0.92170 0.96329 1.21402 0.90952 1.00239 1.01180 1.21674 0.97558 0.93624 1.02819 1.22835 0.79442 0.99578 0.99995 1.88023 1.20828 1.25539 1.94617 1.21626 0.95729 0.86118 0.89674 0.89915 1.22429 0.92876 1.00484 0.99367 1.21079 0.99867 1.00206 0.90514 1.20523 0.95210 0.97105 0.94831 1.20387 0.99986 1.00806 0.89761 1.20580 0.93853 1.02197 0.88915 1.98391 1.89059 1.85129 1.29472 1.20614 0.91931 1.03246 0.90177 1.98408 1.67243 1.96816 1.39020 1.20583 1.00937 0.98216 0.89433 1.21194 0.94527 0.98079 0.96396 0.92770 0.96574 0.97007 0.92695 0.92694 0.91565 0.91626 0.93458 0.93074 0.89346 0.89170 0.89622 0.89231 0.84119 0.83887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.18 13.96 55.43 0.77 -27.41 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.52 -14.98 9.66 -34.44 -0.33 -15.32 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.44 16 10 C -0.10 -1.93 5.15 -26.73 -0.14 -2.07 16 11 C -0.12 -1.90 5.58 -26.74 -0.15 -2.05 16 12 C 0.06 0.75 5.74 37.15 0.21 0.97 16 13 O -0.37 -4.72 10.03 -35.23 -0.35 -5.08 16 14 C 0.13 1.22 3.33 -26.85 -0.09 1.13 16 15 H 0.08 0.70 7.84 -51.93 -0.41 0.30 16 16 C -0.11 -0.81 6.80 -25.33 -0.17 -0.99 16 17 C -0.08 -0.47 6.77 -26.85 -0.18 -0.65 16 18 C -0.08 -0.65 6.14 -104.20 -0.64 -1.29 16 19 C -0.09 -0.76 9.82 -39.50 -0.39 -1.15 16 20 C -0.03 -0.28 6.32 -39.51 -0.25 -0.53 16 21 Cl -0.05 -0.46 27.97 -51.86 -1.45 -1.91 16 22 C -0.03 -0.35 6.32 -39.51 -0.25 -0.60 16 23 Cl -0.04 -0.49 27.97 -51.86 -1.45 -1.94 16 24 C -0.07 -0.81 9.63 -39.51 -0.38 -1.19 16 25 C -0.10 -1.03 5.81 -104.19 -0.61 -1.64 16 26 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 27 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 28 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.05 0.59 6.29 -51.93 -0.33 0.26 16 34 H 0.05 0.62 8.10 -51.93 -0.42 0.20 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.71 8.11 -51.93 -0.42 0.29 16 37 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 40 H 0.14 1.60 6.36 -52.49 -0.33 1.27 16 LS Contribution 357.56 15.07 5.39 5.39 Total: -1.00 -31.51 357.56 -10.98 -42.49 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: -5.64 Total: -4.88 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: -3.57 Total: -23.98 kcal Atomic # 7 Polarization: -28.18 SS G_CDS: 0.77 Total: -27.41 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.35 Total: -5.08 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -2.90 Total: -3.86 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.51 -10.98 -42.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224691271.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.181 kcal (2) G-P(sol) polarization free energy of solvation -31.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds