Wall clock time and date at job start Tue Mar 31 2020 15:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00461 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99611 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47482 * 180.02562 * 11 10 9 13 13 O 1.42895 * 109.47606 * 180.02562 * 12 11 10 14 14 C 1.42904 * 114.00490 * 180.02562 * 13 12 11 15 15 H 1.08998 * 110.27002 * 30.61261 * 14 13 12 16 16 C 1.54340 * 110.30805 * 152.80083 * 14 13 12 17 17 C 1.54342 * 102.39550 * 145.27876 * 16 14 13 18 18 C 1.51371 * 105.17033 * 333.63933 * 17 16 14 19 19 C 1.38495 * 130.36263 * 197.17197 * 18 17 16 20 20 C 1.38193 * 120.22188 * 180.02562 * 19 18 17 21 21 Cl 1.73606 * 120.05117 * 180.02562 * 20 19 18 22 22 C 1.38484 * 119.89698 * 0.02562 * 20 19 18 23 23 Cl 1.73595 * 120.05410 * 180.02562 * 22 20 19 24 24 C 1.38190 * 119.89155 * 359.97438 * 22 20 19 25 25 C 1.38239 * 109.75741 * 17.19645 * 18 17 16 26 26 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 28 28 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 29 29 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 30 30 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 31 31 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 32 32 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 33 33 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 34 34 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 35 35 H 1.09004 * 110.81933 * 263.50644 * 16 14 13 36 36 H 1.09007 * 110.82178 * 27.04903 * 16 14 13 37 37 H 1.09000 * 110.29809 * 214.71978 * 17 16 14 38 38 H 1.08997 * 110.30239 * 92.56486 * 17 16 14 39 39 H 1.07996 * 119.89073 * 0.02562 * 19 18 17 40 40 H 1.07999 * 119.88307 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5514 -2.6367 -0.0009 12 6 6.0614 -4.0791 -0.0015 13 8 7.4904 -4.0792 -0.0008 14 6 8.0717 -5.3846 -0.0018 15 1 7.4216 -6.0870 -0.5235 16 6 9.4659 -5.3497 -0.6628 17 6 10.2466 -6.4006 0.1548 18 6 9.5674 -6.4349 1.5071 19 6 10.0084 -6.9377 2.7199 20 6 9.2033 -6.8577 3.8402 21 17 9.7609 -7.4888 5.3583 22 6 7.9510 -6.2734 3.7500 23 17 6.9366 -6.1702 5.1549 24 6 7.5107 -5.7716 2.5400 25 6 8.3175 -5.8511 1.4172 26 1 -0.4850 0.8401 0.0004 27 1 3.8751 -0.6805 0.8889 28 1 3.8745 -0.6801 -0.8910 29 1 3.6584 -3.1503 0.8892 30 1 3.6578 -3.1506 -0.8908 31 1 5.9148 -2.1229 -0.8909 32 1 5.9148 -2.1228 0.8890 33 1 5.6980 -4.5933 0.8883 34 1 5.6982 -4.5926 -0.8917 35 1 9.4051 -5.6415 -1.7113 36 1 9.9191 -4.3636 -0.5595 37 1 11.2883 -6.0984 0.2624 38 1 10.1828 -7.3770 -0.3254 39 1 10.9848 -7.3938 2.7903 40 1 6.5339 -5.3163 2.4697 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224691271.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:26 Heat of formation + Delta-G solvation = -73.405957 kcal Electronic energy + Delta-G solvation = -22291.254332 eV Core-core repulsion = 18734.961388 eV Total energy + Delta-G solvation = -3556.292945 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.074 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.53438 -39.08183 -37.88889 -37.61501 -36.53834 -35.60659 -34.28797 -32.32134 -30.98900 -29.88547 -27.78573 -26.31972 -24.15363 -23.20922 -22.23890 -22.11569 -21.53210 -18.87024 -18.26002 -17.94121 -17.18522 -17.02931 -16.48091 -16.35498 -15.66759 -15.46861 -15.24473 -14.93172 -14.75893 -14.63629 -14.08665 -13.84463 -13.59076 -13.13256 -13.01081 -12.95311 -12.91530 -12.77773 -12.60587 -12.49118 -12.34830 -12.23887 -11.98254 -11.91759 -11.77003 -11.50394 -11.44327 -11.37510 -11.27340 -10.76551 -10.57322 -10.00125 -9.56102 -8.29926 -6.33930 -0.21121 -0.02303 0.73639 1.08867 1.35579 1.37736 1.50047 2.21734 2.36196 2.73742 3.05561 3.28825 3.36778 3.69373 3.90213 3.92975 4.07010 4.10954 4.23584 4.28049 4.34690 4.42073 4.53371 4.58448 4.61107 4.69457 4.79032 4.83566 4.91333 4.97719 5.09980 5.11831 5.15779 5.18411 5.24134 5.32099 5.48680 5.54282 5.62175 5.67332 6.23585 6.29057 6.74303 7.30938 8.86940 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014538 B = 0.002537 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.496093 B =11036.121695 C =12479.696378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.952 3.048 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.248 1.248 7 C -0.534 4.534 8 H 0.032 0.968 9 C -0.013 4.013 10 C -0.093 4.093 11 C -0.110 4.110 12 C 0.064 3.936 13 O -0.386 6.386 14 C 0.118 3.882 15 H 0.095 0.905 16 C -0.110 4.110 17 C -0.073 4.073 18 C -0.071 4.071 19 C -0.087 4.087 20 C -0.036 4.036 21 Cl -0.048 7.048 22 C -0.048 4.048 23 Cl -0.056 7.056 24 C -0.089 4.089 25 C -0.117 4.117 26 H 0.266 0.734 27 H 0.017 0.983 28 H 0.020 0.980 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.109 0.891 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.113 0.887 39 H 0.168 0.832 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.164 -18.170 2.995 33.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.195 4.195 3 Si 0.775 3.225 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.171 1.171 7 C -0.572 4.572 8 H 0.050 0.950 9 C -0.050 4.050 10 C -0.131 4.131 11 C -0.148 4.148 12 C -0.012 4.012 13 O -0.305 6.305 14 C 0.061 3.939 15 H 0.112 0.888 16 C -0.148 4.148 17 C -0.110 4.110 18 C -0.071 4.071 19 C -0.106 4.106 20 C -0.064 4.064 21 Cl -0.019 7.019 22 C -0.076 4.076 23 Cl -0.027 7.027 24 C -0.108 4.108 25 C -0.118 4.118 26 H 0.075 0.925 27 H 0.035 0.965 28 H 0.038 0.962 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.128 0.872 36 H 0.100 0.900 37 H 0.123 0.877 38 H 0.131 0.869 39 H 0.185 0.815 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 28.084 -17.945 3.264 33.487 hybrid contribution -1.046 0.592 0.770 1.427 sum 27.038 -17.353 4.034 32.380 Atomic orbital electron populations 1.70073 1.08314 1.28160 1.52790 1.26055 0.95648 1.03641 0.94149 0.85635 0.79441 0.78141 0.79314 1.18924 1.21004 1.17125 1.21548 0.92287 0.93111 1.50245 0.94955 1.19538 0.93719 0.95286 0.96497 1.21244 0.93585 0.97241 1.01003 1.21472 0.94747 0.95787 1.02755 1.22628 0.80253 0.97566 1.00756 1.87979 1.20093 1.27697 1.94768 1.21970 0.97224 0.84938 0.89796 0.88776 1.22488 0.91071 1.00605 1.00595 1.21179 1.00294 1.00986 0.88495 1.20891 0.94562 0.95634 0.96028 1.20694 1.00688 1.00101 0.89070 1.20751 0.93737 1.02253 0.89613 1.98389 1.88912 1.85055 1.29511 1.20712 0.92513 1.04453 0.89873 1.98394 1.67730 1.96956 1.39642 1.20596 1.00982 0.99033 0.90149 1.21385 0.95280 0.98722 0.96386 0.92508 0.96474 0.96187 0.93228 0.92659 0.91178 0.92095 0.93268 0.91837 0.87218 0.90048 0.87669 0.86913 0.81485 0.84948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.75 13.96 21.45 0.30 -60.45 16 2 C 0.00 0.09 5.47 84.66 0.46 0.55 16 3 Si 0.95 45.05 27.47 68.60 1.88 46.93 16 4 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 6 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 7 C -0.53 -31.39 9.66 25.60 0.25 -31.15 16 8 H 0.03 2.08 7.99 -2.91 -0.02 2.05 16 9 C -0.01 -0.62 4.04 29.85 0.12 -0.50 16 10 C -0.09 -3.56 5.15 30.59 0.16 -3.41 16 11 C -0.11 -3.37 5.58 30.59 0.17 -3.20 16 12 C 0.06 1.60 5.74 71.98 0.41 2.01 16 13 O -0.39 -9.20 10.03 -148.98 -1.49 -10.69 16 14 C 0.12 2.03 3.33 30.52 0.10 2.13 16 15 H 0.09 1.38 7.84 -2.39 -0.02 1.36 16 16 C -0.11 -1.21 6.80 31.50 0.21 -0.99 16 17 C -0.07 -0.56 6.77 30.52 0.21 -0.36 16 18 C -0.07 -1.01 6.14 -19.59 -0.12 -1.13 16 19 C -0.09 -1.25 9.82 22.32 0.22 -1.03 16 20 C -0.04 -0.68 6.32 22.32 0.14 -0.54 16 21 Cl -0.05 -0.85 27.97 -2.72 -0.08 -0.92 16 22 C -0.05 -1.06 6.32 22.32 0.14 -0.91 16 23 Cl -0.06 -1.29 27.97 -2.72 -0.08 -1.37 16 24 C -0.09 -1.97 9.63 22.32 0.21 -1.75 16 25 C -0.12 -2.21 5.81 -19.59 -0.11 -2.33 16 26 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 27 H 0.02 0.80 7.20 -2.39 -0.02 0.78 16 28 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 29 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.05 1.20 6.29 -2.39 -0.02 1.19 16 34 H 0.06 1.42 8.10 -2.39 -0.02 1.40 16 35 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.08 1.06 8.11 -2.38 -0.02 1.04 16 37 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 40 H 0.13 3.09 6.36 -2.91 -0.02 3.07 16 Total: -1.00 -69.41 357.56 4.10 -65.31 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: 0.99 Total: 3.78 kcal Atomic # 6 Polarization: -45.17 SS G_CDS: 2.58 Total: -42.59 kcal Atomic # 7 Polarization: -60.75 SS G_CDS: 0.30 Total: -60.45 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -1.49 Total: -10.69 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.88 Total: 46.93 kcal Atomic # 17 Polarization: -2.14 SS G_CDS: -0.15 Total: -2.29 kcal Total: -69.41 4.10 -65.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224691271.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.098 kcal (2) G-P(sol) polarization free energy of solvation -69.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds