Wall clock time and date at job start Tue Mar 31 2020 15:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46904 * 109.47192 * 2 1 4 4 C 1.46902 * 109.47048 * 240.00088 * 2 1 3 5 5 C 1.46896 * 109.47250 * 119.99991 * 2 1 3 6 6 C 1.53003 * 109.47002 * 63.78900 * 5 2 1 7 7 H 1.08998 * 109.47007 * 54.88326 * 6 5 2 8 8 C 1.50700 * 109.47311 * 174.89102 * 6 5 2 9 9 H 1.08002 * 119.99430 * 240.00314 * 8 6 5 10 10 C 1.37871 * 120.00332 * 59.99495 * 8 6 5 11 11 N 1.31513 * 119.99863 * 0.02562 * 10 8 6 12 12 Si 1.86803 * 120.00148 * 180.02562 * 10 8 6 13 13 H 1.48493 * 109.47083 * 60.00286 * 12 10 8 14 14 H 1.48503 * 109.46913 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.46808 * 300.00099 * 12 10 8 16 16 O 1.42909 * 109.46894 * 294.88646 * 6 5 2 17 17 C 1.35918 * 116.99586 * 152.39779 * 16 6 5 18 18 C 1.38723 * 120.04710 * 5.62653 * 17 16 6 19 19 C 1.38145 * 119.95722 * 179.97438 * 18 17 16 20 20 C 1.38353 * 120.03874 * 0.25167 * 19 18 17 21 21 Br 1.89096 * 119.95068 * 179.74310 * 20 19 18 22 22 C 1.38339 * 120.09184 * 359.49616 * 20 19 18 23 23 C 1.38141 * 120.04784 * 0.50018 * 22 20 19 24 24 H 1.08999 * 109.47217 * 291.21023 * 1 2 3 25 25 H 1.09005 * 109.47106 * 51.20790 * 1 2 3 26 26 H 1.08999 * 109.47263 * 171.20604 * 1 2 3 27 27 H 1.08995 * 109.47044 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47002 * 300.00397 * 3 2 1 29 29 H 1.09002 * 109.46655 * 59.99766 * 3 2 1 30 30 H 1.08994 * 109.47303 * 300.00279 * 4 2 1 31 31 H 1.09006 * 109.47234 * 60.00365 * 4 2 1 32 32 H 1.08995 * 109.47276 * 179.97438 * 4 2 1 33 33 H 1.09002 * 109.47040 * 303.79391 * 5 2 1 34 34 H 1.08994 * 109.47113 * 183.78847 * 5 2 1 35 35 H 0.97005 * 119.99951 * 179.97438 * 11 10 8 36 36 H 1.08001 * 120.02401 * 359.95197 * 18 17 16 37 37 H 1.07992 * 119.98382 * 179.97438 * 19 18 17 38 38 H 1.08007 * 119.97431 * 180.23249 * 22 20 19 39 39 H 1.07996 * 120.02524 * 179.72777 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3850 0.0000 4 6 1.9587 -0.6925 -1.1995 5 6 1.9587 -0.6925 1.1994 6 6 1.5280 -2.1599 1.1526 7 1 1.8689 -2.6090 0.2198 8 6 2.1348 -2.8989 2.3174 9 1 2.7958 -3.7347 2.1413 10 6 1.8463 -2.5081 3.6077 11 7 1.0411 -1.4906 3.8220 12 14 2.5991 -3.4237 5.0514 13 1 4.0795 -3.3392 4.9736 14 1 2.1340 -2.8122 6.3222 15 1 2.1815 -4.8481 5.0061 16 8 0.1032 -2.2407 1.2274 17 6 -0.4850 -3.3190 0.6454 18 6 0.2968 -4.3366 0.1184 19 6 -0.3030 -5.4319 -0.4723 20 6 -1.6824 -5.5119 -0.5430 21 35 -2.5006 -7.0089 -1.3585 22 6 -2.4639 -4.5007 -0.0134 23 6 -1.8680 -3.4037 0.5781 24 1 -0.3633 0.3718 0.9580 25 1 -0.3633 0.6439 -0.8010 26 1 -0.3634 -1.0156 -0.1571 27 1 3.0487 1.3850 0.0005 28 1 1.5953 1.8988 -0.8899 29 1 1.5953 1.8988 0.8900 30 1 1.5953 -1.7201 -1.1995 31 1 1.5954 -0.1786 -2.0895 32 1 3.0486 -0.6921 -1.1997 33 1 1.5409 -0.2194 2.0881 34 1 3.0465 -0.6340 1.2340 35 1 0.8378 -1.2158 4.7298 36 1 1.3737 -4.2723 0.1695 37 1 0.3052 -6.2241 -0.8830 38 1 -3.5406 -4.5669 -0.0663 39 1 -2.4784 -2.6124 0.9875 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225249506.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:42 Heat of formation + Delta-G solvation = 97.679362 kcal Electronic energy + Delta-G solvation = -21408.707428 eV Core-core repulsion = 18288.759372 eV Total energy + Delta-G solvation = -3119.948056 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.065 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.44105 -40.67094 -38.20951 -34.84388 -32.59943 -32.03386 -31.51953 -30.46584 -30.29032 -29.06504 -27.91851 -25.17528 -24.14672 -23.02510 -22.01835 -19.45643 -19.06327 -18.61024 -18.25313 -17.59869 -16.61394 -16.50513 -16.15845 -15.63166 -15.43672 -14.96817 -14.81771 -14.43327 -14.30680 -14.20377 -14.13628 -14.01624 -13.81798 -13.74353 -13.50051 -12.91659 -12.76490 -12.42889 -12.21568 -12.06279 -11.86772 -11.35378 -11.22597 -10.98629 -10.69539 -10.23932 -9.88726 -8.77313 -7.86172 -6.08726 0.24724 0.44899 0.47607 0.95414 2.05938 2.17744 2.19368 2.22743 2.27210 2.31158 2.59918 2.84544 2.95417 3.08545 3.14504 3.34766 3.43903 3.57462 3.61063 3.67203 3.70317 3.75485 3.98254 4.02512 4.05532 4.16587 4.19418 4.35120 4.48601 4.58011 4.80193 4.97287 5.11705 5.25643 5.45739 5.55566 5.85323 5.99566 6.15848 6.72547 7.10926 7.77091 9.16309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.272 5.272 3 C -0.040 4.040 4 C -0.048 4.048 5 C -0.002 4.002 6 C 0.191 3.809 7 H 0.049 0.951 8 C -0.566 4.566 9 H 0.079 0.921 10 C 0.093 3.907 11 N -0.861 5.861 12 Si 0.903 3.097 13 H -0.268 1.268 14 H -0.278 1.278 15 H -0.267 1.267 16 O -0.301 6.301 17 C 0.167 3.833 18 C -0.201 4.201 19 C -0.051 4.051 20 C -0.140 4.140 21 Br -0.061 7.061 22 C -0.053 4.053 23 C -0.164 4.164 24 H 0.121 0.879 25 H 0.099 0.901 26 H 0.131 0.869 27 H 0.113 0.887 28 H 0.110 0.890 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.111 0.889 32 H 0.116 0.884 33 H 0.160 0.840 34 H 0.123 0.877 35 H 0.280 0.720 36 H 0.141 0.859 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.037 11.647 -12.085 16.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 N 0.069 4.931 3 C -0.182 4.182 4 C -0.189 4.189 5 C -0.121 4.121 6 C 0.137 3.863 7 H 0.067 0.933 8 C -0.603 4.603 9 H 0.097 0.903 10 C -0.117 4.117 11 N -0.494 5.494 12 Si 0.729 3.271 13 H -0.193 1.193 14 H -0.203 1.203 15 H -0.192 1.192 16 O -0.214 6.214 17 C 0.119 3.881 18 C -0.220 4.220 19 C -0.071 4.071 20 C -0.219 4.219 21 Br 0.024 6.976 22 C -0.072 4.072 23 C -0.184 4.184 24 H 0.140 0.860 25 H 0.118 0.882 26 H 0.149 0.851 27 H 0.132 0.868 28 H 0.128 0.872 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.129 0.871 32 H 0.134 0.866 33 H 0.177 0.823 34 H 0.141 0.859 35 H 0.091 0.909 36 H 0.158 0.842 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.574 11.398 -12.127 16.717 hybrid contribution 0.662 -0.340 1.170 1.387 sum 2.237 11.057 -10.957 15.727 Atomic orbital electron populations 1.24350 0.76336 1.09796 1.07911 1.46388 1.15689 1.14533 1.16488 1.24005 1.04913 0.81107 1.08191 1.24071 1.05027 1.02478 0.87358 1.24894 1.03363 0.97185 0.86626 1.20387 0.77875 0.89550 0.98514 0.93311 1.21172 1.31853 1.17659 0.89579 0.90312 1.25026 0.92710 0.94170 0.99831 1.69591 1.31411 1.24798 1.23646 0.86375 0.79842 0.80712 0.80175 1.19283 1.20278 1.19189 1.86332 1.24864 1.39054 1.71154 1.19042 0.91960 0.87737 0.89330 1.21355 1.00998 0.95204 1.04449 1.20929 0.92513 0.97419 0.96263 1.21573 0.95087 0.96185 1.09095 1.96708 1.81383 1.39271 1.80287 1.20873 0.99772 0.91631 0.94959 1.20446 0.92153 1.00386 1.05394 0.86027 0.88235 0.85075 0.86831 0.87189 0.86474 0.86437 0.87076 0.86565 0.82262 0.85884 0.90936 0.84172 0.85285 0.84931 0.84855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.39 7.14 60.07 0.43 0.82 16 2 N -0.27 2.80 0.05 -395.62 -0.02 2.78 16 3 C -0.04 0.52 8.00 60.07 0.48 1.00 16 4 C -0.05 0.55 7.55 60.07 0.45 1.00 16 5 C 0.00 0.01 3.55 -3.82 -0.01 0.00 16 6 C 0.19 -0.01 1.35 -27.88 -0.04 -0.05 16 7 H 0.05 -0.12 3.94 -51.93 -0.20 -0.32 16 8 C -0.57 -3.34 8.25 -34.44 -0.28 -3.63 16 9 H 0.08 0.55 7.81 -52.49 -0.41 0.14 16 10 C 0.09 0.75 5.24 -17.82 -0.09 0.66 16 11 N -0.86 -6.82 10.93 55.43 0.61 -6.22 16 12 Si 0.90 7.76 29.54 -169.99 -5.02 2.74 16 13 H -0.27 -2.33 7.11 56.52 0.40 -1.92 16 14 H -0.28 -2.67 7.11 56.52 0.40 -2.27 16 15 H -0.27 -2.69 7.11 56.52 0.40 -2.29 16 16 O -0.30 -0.36 6.15 -19.48 -0.12 -0.48 16 17 C 0.17 0.30 5.92 -39.22 -0.23 0.07 16 18 C -0.20 -0.36 8.77 -39.44 -0.35 -0.71 16 19 C -0.05 -0.11 9.78 -39.57 -0.39 -0.49 16 20 C -0.14 -0.36 6.22 -39.50 -0.25 -0.60 16 21 Br -0.06 -0.16 33.70 -68.01 -2.29 -2.45 16 22 C -0.05 -0.09 9.78 -39.58 -0.39 -0.48 16 23 C -0.16 -0.24 9.99 -39.44 -0.39 -0.64 16 24 H 0.12 -0.92 7.96 -51.93 -0.41 -1.33 16 25 H 0.10 -1.19 8.02 -51.93 -0.42 -1.61 16 26 H 0.13 -0.88 4.93 -51.93 -0.26 -1.14 16 27 H 0.11 -1.53 8.12 -51.93 -0.42 -1.95 16 28 H 0.11 -1.60 8.08 -51.93 -0.42 -2.02 16 29 H 0.12 -1.42 8.14 -51.93 -0.42 -1.85 16 30 H 0.12 -1.14 5.91 -51.93 -0.31 -1.44 16 31 H 0.11 -1.52 8.14 -51.93 -0.42 -1.95 16 32 H 0.12 -1.46 8.14 -51.93 -0.42 -1.89 16 33 H 0.16 -0.26 6.08 -51.93 -0.32 -0.57 16 34 H 0.12 -0.69 8.11 -51.93 -0.42 -1.11 16 35 H 0.28 2.47 8.31 -40.82 -0.34 2.13 16 36 H 0.14 0.16 5.74 -52.49 -0.30 -0.14 16 37 H 0.13 0.12 8.06 -52.49 -0.42 -0.30 16 38 H 0.13 0.06 8.06 -52.48 -0.42 -0.36 16 39 H 0.13 0.03 8.06 -52.49 -0.42 -0.39 16 LS Contribution 324.85 15.07 4.90 4.90 Total: 0.00 -15.82 324.85 -8.57 -24.39 By element: Atomic # 1 Polarization: -17.04 SS G_CDS: -5.56 Total: -22.60 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -1.06 Total: -3.05 kcal Atomic # 7 Polarization: -4.03 SS G_CDS: 0.59 Total: -3.44 kcal Atomic # 8 Polarization: -0.36 SS G_CDS: -0.12 Total: -0.48 kcal Atomic # 14 Polarization: 7.76 SS G_CDS: -5.02 Total: 2.74 kcal Atomic # 35 Polarization: -0.16 SS G_CDS: -2.29 Total: -2.45 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -15.82 -8.57 -24.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225249506.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.067 kcal (2) G-P(sol) polarization free energy of solvation -15.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds