Wall clock time and date at job start Tue Mar 31 2020 15:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46904 * 109.47192 * 2 1 4 4 C 1.46902 * 109.47048 * 240.00088 * 2 1 3 5 5 C 1.46896 * 109.47250 * 119.99991 * 2 1 3 6 6 C 1.53003 * 109.47002 * 63.78900 * 5 2 1 7 7 H 1.08998 * 109.47007 * 54.88326 * 6 5 2 8 8 C 1.50700 * 109.47311 * 174.89102 * 6 5 2 9 9 H 1.08002 * 119.99430 * 240.00314 * 8 6 5 10 10 C 1.37871 * 120.00332 * 59.99495 * 8 6 5 11 11 N 1.31513 * 119.99863 * 0.02562 * 10 8 6 12 12 Si 1.86803 * 120.00148 * 180.02562 * 10 8 6 13 13 H 1.48493 * 109.47083 * 60.00286 * 12 10 8 14 14 H 1.48503 * 109.46913 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.46808 * 300.00099 * 12 10 8 16 16 O 1.42909 * 109.46894 * 294.88646 * 6 5 2 17 17 C 1.35918 * 116.99586 * 152.39779 * 16 6 5 18 18 C 1.38723 * 120.04710 * 5.62653 * 17 16 6 19 19 C 1.38145 * 119.95722 * 179.97438 * 18 17 16 20 20 C 1.38353 * 120.03874 * 0.25167 * 19 18 17 21 21 Br 1.89096 * 119.95068 * 179.74310 * 20 19 18 22 22 C 1.38339 * 120.09184 * 359.49616 * 20 19 18 23 23 C 1.38141 * 120.04784 * 0.50018 * 22 20 19 24 24 H 1.08999 * 109.47217 * 291.21023 * 1 2 3 25 25 H 1.09005 * 109.47106 * 51.20790 * 1 2 3 26 26 H 1.08999 * 109.47263 * 171.20604 * 1 2 3 27 27 H 1.08995 * 109.47044 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47002 * 300.00397 * 3 2 1 29 29 H 1.09002 * 109.46655 * 59.99766 * 3 2 1 30 30 H 1.08994 * 109.47303 * 300.00279 * 4 2 1 31 31 H 1.09006 * 109.47234 * 60.00365 * 4 2 1 32 32 H 1.08995 * 109.47276 * 179.97438 * 4 2 1 33 33 H 1.09002 * 109.47040 * 303.79391 * 5 2 1 34 34 H 1.08994 * 109.47113 * 183.78847 * 5 2 1 35 35 H 0.97005 * 119.99951 * 179.97438 * 11 10 8 36 36 H 1.08001 * 120.02401 * 359.95197 * 18 17 16 37 37 H 1.07992 * 119.98382 * 179.97438 * 19 18 17 38 38 H 1.08007 * 119.97431 * 180.23249 * 22 20 19 39 39 H 1.07996 * 120.02524 * 179.72777 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3850 0.0000 4 6 1.9587 -0.6925 -1.1995 5 6 1.9587 -0.6925 1.1994 6 6 1.5280 -2.1599 1.1526 7 1 1.8689 -2.6090 0.2198 8 6 2.1348 -2.8989 2.3174 9 1 2.7958 -3.7347 2.1413 10 6 1.8463 -2.5081 3.6077 11 7 1.0411 -1.4906 3.8220 12 14 2.5991 -3.4237 5.0514 13 1 4.0795 -3.3392 4.9736 14 1 2.1340 -2.8122 6.3222 15 1 2.1815 -4.8481 5.0061 16 8 0.1032 -2.2407 1.2274 17 6 -0.4850 -3.3190 0.6454 18 6 0.2968 -4.3366 0.1184 19 6 -0.3030 -5.4319 -0.4723 20 6 -1.6824 -5.5119 -0.5430 21 35 -2.5006 -7.0089 -1.3585 22 6 -2.4639 -4.5007 -0.0134 23 6 -1.8680 -3.4037 0.5781 24 1 -0.3633 0.3718 0.9580 25 1 -0.3633 0.6439 -0.8010 26 1 -0.3634 -1.0156 -0.1571 27 1 3.0487 1.3850 0.0005 28 1 1.5953 1.8988 -0.8899 29 1 1.5953 1.8988 0.8900 30 1 1.5953 -1.7201 -1.1995 31 1 1.5954 -0.1786 -2.0895 32 1 3.0486 -0.6921 -1.1997 33 1 1.5409 -0.2194 2.0881 34 1 3.0465 -0.6340 1.2340 35 1 0.8378 -1.2158 4.7298 36 1 1.3737 -4.2723 0.1695 37 1 0.3052 -6.2241 -0.8830 38 1 -3.5406 -4.5669 -0.0663 39 1 -2.4784 -2.6124 0.9875 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225249506.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:41 Heat of formation + Delta-G solvation = 96.722596 kcal Electronic energy + Delta-G solvation = -21408.748917 eV Core-core repulsion = 18288.759372 eV Total energy + Delta-G solvation = -3119.989545 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.065 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.80613 -40.69093 -38.28146 -35.20923 -32.76018 -32.15127 -31.48630 -29.59585 -29.47147 -29.12043 -27.90083 -25.04374 -23.96707 -23.02870 -22.00303 -19.60556 -18.75079 -17.90229 -17.70110 -17.50888 -16.72254 -16.59443 -16.39921 -15.68591 -15.51602 -14.55182 -14.48501 -14.31139 -14.11812 -13.91639 -13.55254 -13.29259 -13.24750 -13.18151 -13.15519 -12.97473 -12.89204 -12.73550 -12.57897 -12.44472 -12.16058 -11.72091 -11.32355 -11.14778 -10.91480 -10.84954 -10.01742 -8.93023 -8.42012 -6.59023 0.30166 0.34780 0.78375 1.01412 1.32255 1.41917 1.49419 2.25588 2.41294 2.71680 2.84361 3.06620 3.12669 3.26641 3.85445 3.89232 4.01079 4.11815 4.20661 4.30200 4.31409 4.34274 4.40449 4.48718 4.49589 4.59466 4.62749 4.74309 4.78006 4.81552 4.96190 5.00278 5.14970 5.16284 5.32299 5.44382 5.55810 5.74471 5.75105 6.38526 6.80090 7.24354 8.55700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.259 5.259 3 C -0.042 4.042 4 C -0.054 4.054 5 C 0.015 3.985 6 C 0.186 3.814 7 H 0.075 0.925 8 C -0.567 4.567 9 H 0.061 0.939 10 C 0.075 3.925 11 N -0.864 5.864 12 Si 0.913 3.087 13 H -0.269 1.269 14 H -0.295 1.295 15 H -0.293 1.293 16 O -0.299 6.299 17 C 0.161 3.839 18 C -0.205 4.205 19 C -0.058 4.058 20 C -0.152 4.152 21 Br -0.066 7.066 22 C -0.056 4.056 23 C -0.167 4.167 24 H 0.102 0.898 25 H 0.137 0.863 26 H 0.107 0.893 27 H 0.125 0.875 28 H 0.140 0.860 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.143 0.857 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.138 0.862 35 H 0.269 0.731 36 H 0.144 0.856 37 H 0.137 0.863 38 H 0.144 0.856 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.256 13.434 -14.467 19.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 N 0.083 4.917 3 C -0.183 4.183 4 C -0.195 4.195 5 C -0.105 4.105 6 C 0.132 3.868 7 H 0.093 0.907 8 C -0.604 4.604 9 H 0.080 0.920 10 C -0.132 4.132 11 N -0.500 5.500 12 Si 0.742 3.258 13 H -0.194 1.194 14 H -0.221 1.221 15 H -0.219 1.219 16 O -0.212 6.212 17 C 0.113 3.887 18 C -0.224 4.224 19 C -0.078 4.078 20 C -0.231 4.231 21 Br 0.019 6.981 22 C -0.076 4.076 23 C -0.186 4.186 24 H 0.121 0.879 25 H 0.156 0.844 26 H 0.126 0.874 27 H 0.144 0.856 28 H 0.158 0.842 29 H 0.128 0.872 30 H 0.115 0.885 31 H 0.161 0.839 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.156 0.844 35 H 0.079 0.921 36 H 0.162 0.838 37 H 0.154 0.846 38 H 0.162 0.838 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.806 13.193 -14.517 19.700 hybrid contribution 0.608 -0.940 1.848 2.161 sum 2.414 12.253 -12.669 17.789 Atomic orbital electron populations 1.24294 0.76805 1.08975 1.08371 1.46004 1.15188 1.15670 1.14809 1.24205 1.05767 0.78961 1.09343 1.24274 1.06118 1.01616 0.87454 1.24148 1.03845 0.94457 0.88082 1.20482 0.76775 0.92347 0.97234 0.90733 1.21445 1.30685 1.17295 0.91013 0.92036 1.25087 0.93631 0.94575 0.99954 1.69666 1.32678 1.25273 1.22369 0.86321 0.79723 0.79121 0.80624 1.19409 1.22079 1.21900 1.86367 1.25062 1.38508 1.71233 1.19195 0.92298 0.87882 0.89290 1.21415 1.01209 0.95255 1.04540 1.21067 0.92599 0.97746 0.96362 1.21685 0.95386 0.96374 1.09693 1.96693 1.81439 1.39582 1.80387 1.21049 1.00408 0.91461 0.94674 1.20594 0.92228 1.00599 1.05190 0.87888 0.84439 0.87446 0.85603 0.84186 0.87236 0.88458 0.83894 0.85024 0.84965 0.84445 0.92126 0.83820 0.84555 0.83825 0.83780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.84 7.14 127.69 0.91 1.75 16 2 N -0.26 5.78 0.05 ******* -0.07 5.72 16 3 C -0.04 1.20 8.00 127.69 1.02 2.22 16 4 C -0.05 1.38 7.55 127.69 0.96 2.34 16 5 C 0.02 -0.15 3.55 86.31 0.31 0.16 16 6 C 0.19 -0.01 1.35 29.85 0.04 0.03 16 7 H 0.08 -0.40 3.94 -2.39 -0.01 -0.41 16 8 C -0.57 -7.30 8.25 25.60 0.21 -7.09 16 9 H 0.06 0.96 7.81 -2.91 -0.02 0.93 16 10 C 0.08 1.35 5.24 84.65 0.44 1.79 16 11 N -0.86 -15.17 10.93 21.44 0.23 -14.93 16 12 Si 0.91 18.01 29.54 68.60 2.03 20.04 16 13 H -0.27 -5.19 7.11 99.48 0.71 -4.48 16 14 H -0.29 -6.53 7.11 99.48 0.71 -5.82 16 15 H -0.29 -6.84 7.11 99.48 0.71 -6.13 16 16 O -0.30 -0.83 6.15 -92.63 -0.57 -1.40 16 17 C 0.16 0.64 5.92 22.50 0.13 0.77 16 18 C -0.20 -0.81 8.77 22.36 0.20 -0.61 16 19 C -0.06 -0.26 9.78 22.27 0.22 -0.05 16 20 C -0.15 -0.82 6.22 22.32 0.14 -0.68 16 21 Br -0.07 -0.36 33.70 -20.37 -0.69 -1.05 16 22 C -0.06 -0.21 9.78 22.27 0.22 0.01 16 23 C -0.17 -0.53 9.99 22.36 0.22 -0.30 16 24 H 0.10 -1.56 7.96 -2.39 -0.02 -1.57 16 25 H 0.14 -3.72 8.02 -2.38 -0.02 -3.74 16 26 H 0.11 -1.50 4.93 -2.39 -0.01 -1.51 16 27 H 0.13 -3.77 8.12 -2.39 -0.02 -3.79 16 28 H 0.14 -4.67 8.08 -2.39 -0.02 -4.69 16 29 H 0.11 -2.82 8.14 -2.39 -0.02 -2.84 16 30 H 0.10 -2.03 5.91 -2.39 -0.01 -2.04 16 31 H 0.14 -4.49 8.14 -2.38 -0.02 -4.51 16 32 H 0.13 -3.72 8.14 -2.39 -0.02 -3.74 16 33 H 0.13 -0.37 6.08 -2.39 -0.01 -0.38 16 34 H 0.14 -1.71 8.11 -2.39 -0.02 -1.73 16 35 H 0.27 5.31 8.31 -92.70 -0.77 4.54 16 36 H 0.14 0.38 5.74 -2.91 -0.02 0.36 16 37 H 0.14 0.32 8.06 -2.91 -0.02 0.29 16 38 H 0.14 0.12 8.06 -2.91 -0.02 0.09 16 39 H 0.14 0.07 8.06 -2.91 -0.02 0.04 16 Total: 0.00 -39.41 324.85 7.00 -32.42 By element: Atomic # 1 Polarization: -42.16 SS G_CDS: 1.04 Total: -41.12 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: 5.03 Total: 0.34 kcal Atomic # 7 Polarization: -9.38 SS G_CDS: 0.17 Total: -9.22 kcal Atomic # 8 Polarization: -0.83 SS G_CDS: -0.57 Total: -1.40 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: 2.03 Total: 20.04 kcal Atomic # 35 Polarization: -0.36 SS G_CDS: -0.69 Total: -1.05 kcal Total: -39.41 7.00 -32.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225249506.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.138 kcal (2) G-P(sol) polarization free energy of solvation -39.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds