Wall clock time and date at job start Tue Mar 31 2020 15:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00471 * 2 1 4 4 H 1.48500 * 109.46940 * 270.00108 * 3 2 1 5 5 H 1.48504 * 109.46884 * 29.99888 * 3 2 1 6 6 H 1.48499 * 109.47466 * 149.99412 * 3 2 1 7 7 C 1.37885 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99954 * 185.16358 * 7 2 1 9 9 C 1.50700 * 119.99847 * 5.15942 * 7 2 1 10 10 H 1.09003 * 109.47049 * 24.88273 * 9 7 2 11 11 O 1.42898 * 109.46691 * 144.88079 * 9 7 2 12 12 C 1.35510 * 117.00133 * 270.00068 * 11 9 7 13 13 N 1.32155 * 118.84390 * 180.02562 * 12 11 9 14 14 C 1.32955 * 120.60946 * 179.97438 * 13 12 11 15 15 N 1.37194 * 134.83181 * 179.97438 * 14 13 12 16 16 H 0.96996 * 126.27869 * 359.97438 * 15 14 13 17 17 C 1.36422 * 107.43611 * 180.02562 * 15 14 13 18 18 N 1.30111 * 109.94908 * 0.22470 * 17 15 14 19 19 C 1.35538 * 109.44310 * 359.63473 * 18 17 15 20 20 C 1.40600 * 134.58922 * 180.09367 * 19 18 17 21 21 S 1.76204 * 120.73312 * 0.26633 * 20 19 18 22 22 N 1.32498 * 118.83824 * 0.02562 * 12 11 9 23 23 C 1.50696 * 109.47120 * 264.88011 * 9 7 2 24 24 C 1.38235 * 120.00367 * 277.67560 * 23 9 7 25 25 C 1.38224 * 120.00278 * 179.79035 * 24 23 9 26 26 C 1.38233 * 120.00074 * 0.44307 * 25 24 23 27 27 C 1.38239 * 120.00118 * 359.81100 * 26 25 24 28 28 C 1.38235 * 119.99869 * 97.95408 * 23 9 7 29 29 H 0.97000 * 119.99770 * 0.02562 * 1 2 3 30 30 H 1.07992 * 125.02487 * 179.97438 * 17 15 14 31 31 H 1.40995 * 100.00038 * 89.99855 * 21 20 19 32 32 H 1.08003 * 119.99259 * 0.02562 * 24 23 9 33 33 H 1.08002 * 120.00104 * 180.27871 * 25 24 23 34 34 H 1.08001 * 120.00561 * 179.82956 * 26 25 24 35 35 H 1.07996 * 120.00138 * 179.97438 * 27 26 25 36 36 H 1.08004 * 120.00148 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0812 -1.1960 0.0847 9 6 1.2555 -2.4966 -0.1162 10 1 0.3029 -2.3243 -0.6172 11 8 2.0316 -3.4258 -0.8753 12 6 1.8424 -3.4339 -2.2171 13 7 2.5409 -4.2794 -2.9544 14 6 2.3829 -4.3175 -4.2740 15 7 2.9342 -5.0517 -5.2934 16 1 3.6086 -5.7430 -5.2032 17 6 2.3607 -4.6302 -6.4572 18 7 1.5009 -3.6850 -6.2116 19 6 1.4619 -3.4460 -4.8781 20 6 0.7408 -2.5640 -4.0540 21 16 -0.4306 -1.4425 -4.7431 22 7 0.9634 -2.5938 -2.7436 23 6 1.0052 -3.0573 1.2600 24 6 1.9948 -3.7762 1.9039 25 6 1.7667 -4.2868 3.1680 26 6 0.5458 -4.0863 3.7845 27 6 -0.4457 -3.3718 3.1385 28 6 -0.2160 -2.8575 1.8760 29 1 -0.4850 0.8401 -0.0004 30 1 2.5897 -5.0202 -7.4379 31 1 -1.5922 -2.2401 -4.6925 32 1 2.9475 -3.9358 1.4208 33 1 2.5415 -4.8447 3.6730 34 1 0.3666 -4.4875 4.7711 35 1 -1.3997 -3.2155 3.6200 36 1 -0.9907 -2.2993 1.3713 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226786309.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:12 Heat of formation + Delta-G solvation = 111.730173 kcal Electronic energy + Delta-G solvation = -24747.242759 eV Core-core repulsion = 21132.206883 eV Total energy + Delta-G solvation = -3615.035876 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.40046 -39.58917 -38.38452 -36.72230 -33.96183 -33.07134 -32.06799 -30.90486 -30.06678 -29.27305 -26.86543 -24.79111 -23.93024 -22.71171 -21.72150 -21.69177 -20.48466 -19.17281 -18.48033 -17.34612 -16.87024 -16.45105 -16.11682 -15.92778 -15.59793 -14.63715 -14.48523 -14.40789 -14.25172 -13.97317 -13.75707 -13.11483 -12.67539 -12.56647 -12.03113 -11.89759 -11.65204 -11.57592 -11.21233 -10.98469 -10.80882 -10.62364 -10.41851 -10.38566 -10.28138 -9.74601 -9.48237 -9.36809 -8.72825 -8.60120 -8.11141 -8.02474 -7.82729 -7.75191 -6.22960 -4.30716 0.55573 1.43911 1.63150 2.15615 2.22567 2.35323 2.64951 2.86974 3.26100 3.32839 3.34795 3.53302 4.09066 4.11485 4.30541 4.46610 4.67972 4.81021 4.94861 5.14470 5.37929 5.60093 5.62196 5.70398 5.80926 6.15184 6.32652 6.35885 6.49262 6.77482 6.80721 6.85818 7.09301 7.19505 7.25123 7.30742 7.53945 7.66363 7.70231 7.81815 7.93572 7.95747 8.46944 8.85439 9.36200 10.82673 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.011300 B = 0.004779 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.299369 B = 5857.158712 C = 7146.698929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.085 3.915 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.530 4.530 8 H 0.064 0.936 9 C 0.233 3.767 10 H 0.095 0.905 11 O -0.291 6.291 12 C 0.551 3.449 13 N -0.532 5.532 14 C 0.317 3.683 15 N -0.587 5.587 16 H 0.429 0.571 17 C 0.257 3.743 18 N -0.452 5.452 19 C -0.070 4.070 20 C 0.262 3.738 21 S -0.077 6.077 22 N -0.484 5.484 23 C -0.034 4.034 24 C -0.111 4.111 25 C -0.132 4.132 26 C -0.147 4.147 27 C -0.129 4.129 28 C -0.100 4.100 29 H 0.269 0.731 30 H 0.227 0.773 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.160 -9.366 -8.214 12.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.122 4.122 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.567 4.567 8 H 0.082 0.918 9 C 0.179 3.821 10 H 0.113 0.887 11 O -0.191 6.191 12 C 0.245 3.755 13 N -0.268 5.268 14 C 0.070 3.930 15 N -0.205 5.205 16 H 0.269 0.731 17 C -0.031 4.031 18 N -0.171 5.171 19 C -0.197 4.197 20 C -0.008 4.008 21 S 0.079 5.921 22 N -0.212 5.212 23 C -0.034 4.034 24 C -0.130 4.130 25 C -0.150 4.150 26 C -0.165 4.165 27 C -0.147 4.147 28 C -0.118 4.118 29 H 0.079 0.921 30 H 0.243 0.757 31 H 0.073 0.927 32 H 0.135 0.865 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.129 0.871 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.297 -8.105 -7.804 11.255 hybrid contribution 1.208 -0.865 0.393 1.537 sum 1.505 -8.970 -7.411 11.732 Atomic orbital electron populations 1.69853 1.05946 1.27708 1.46049 1.24869 0.94911 0.99252 0.93137 0.86489 0.79938 0.82549 0.78550 1.20071 1.20804 1.19727 1.21127 0.93831 0.88981 1.52783 0.91762 1.19497 0.94251 0.84331 0.83997 0.88741 1.86083 1.63172 1.60017 1.09824 1.20335 0.84083 0.83800 0.87243 1.66208 1.29828 1.28098 1.02705 1.18451 0.93827 0.92937 0.87811 1.42751 1.37780 1.34787 1.05203 0.73080 1.25548 0.92541 0.94168 0.90863 1.70320 1.19177 1.14595 1.12981 1.20120 1.04458 1.02898 0.92234 1.21934 0.96167 0.93433 0.89230 1.86913 1.05630 1.21197 1.78399 1.69037 1.19537 1.21392 1.11249 1.20163 0.92616 0.93244 0.97410 1.20966 0.99294 0.98143 0.94552 1.20963 0.96950 1.01423 0.95665 1.20875 0.94403 1.01749 0.99514 1.20981 0.98737 0.99459 0.95547 1.20999 0.97064 0.98658 0.95087 0.92097 0.75670 0.92702 0.86550 0.87322 0.87465 0.87133 0.85402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.02 12.84 55.43 0.71 -22.30 16 2 C 0.09 2.27 5.45 -17.82 -0.10 2.18 16 3 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.53 -14.30 8.63 -34.44 -0.30 -14.60 16 8 H 0.06 1.78 7.82 -52.49 -0.41 1.37 16 9 C 0.23 5.83 2.14 -29.04 -0.06 5.77 16 10 H 0.09 2.53 6.06 -51.93 -0.31 2.22 16 11 O -0.29 -7.06 9.07 -18.22 -0.17 -7.22 16 12 C 0.55 12.55 8.43 -91.24 -0.77 11.78 16 13 N -0.53 -10.78 10.49 -14.05 -0.15 -10.93 16 14 C 0.32 5.39 8.50 -155.78 -1.32 4.06 16 15 N -0.59 -6.40 6.20 -13.24 -0.08 -6.48 16 16 H 0.43 3.06 8.96 -40.82 -0.37 2.69 16 17 C 0.26 2.46 12.99 -89.42 -1.16 1.30 16 18 N -0.45 -6.55 11.28 -11.81 -0.13 -6.68 16 19 C -0.07 -1.24 7.07 -84.51 -0.60 -1.84 16 20 C 0.26 5.21 7.14 -16.18 -0.12 5.09 16 21 S -0.08 -1.34 26.05 -107.50 -2.80 -4.14 16 22 N -0.48 -10.99 8.61 -13.27 -0.11 -11.10 16 23 C -0.03 -0.78 4.97 -104.63 -0.52 -1.30 16 24 C -0.11 -2.35 9.35 -39.59 -0.37 -2.72 16 25 C -0.13 -2.40 10.05 -39.59 -0.40 -2.80 16 26 C -0.15 -2.56 10.05 -39.58 -0.40 -2.96 16 27 C -0.13 -2.40 10.05 -39.58 -0.40 -2.80 16 28 C -0.10 -2.17 9.67 -39.58 -0.38 -2.55 16 29 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.23 0.78 8.06 -52.49 -0.42 0.36 16 31 H 0.11 1.61 9.55 96.90 0.93 2.53 16 32 H 0.12 2.44 7.71 -52.48 -0.40 2.03 16 33 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 34 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 35 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.13 2.88 8.05 -52.48 -0.42 2.46 16 LS Contribution 338.58 15.07 5.10 5.10 Total: -1.00 -32.03 338.58 -11.36 -43.39 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -1.82 Total: 5.64 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -6.89 Total: -1.38 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: 0.23 Total: -57.49 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -0.17 Total: -7.22 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -1.34 SS G_CDS: -2.80 Total: -4.14 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.03 -11.36 -43.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226786309.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.122 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds