Wall clock time and date at job start Tue Mar 31 2020 15:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00471 * 2 1 4 4 H 1.48500 * 109.46940 * 270.00108 * 3 2 1 5 5 H 1.48504 * 109.46884 * 29.99888 * 3 2 1 6 6 H 1.48499 * 109.47466 * 149.99412 * 3 2 1 7 7 C 1.37885 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99954 * 185.16358 * 7 2 1 9 9 C 1.50700 * 119.99847 * 5.15942 * 7 2 1 10 10 H 1.09003 * 109.47049 * 24.88273 * 9 7 2 11 11 O 1.42898 * 109.46691 * 144.88079 * 9 7 2 12 12 C 1.35510 * 117.00133 * 270.00068 * 11 9 7 13 13 N 1.32155 * 118.84390 * 180.02562 * 12 11 9 14 14 C 1.32955 * 120.60946 * 179.97438 * 13 12 11 15 15 N 1.37194 * 134.83181 * 179.97438 * 14 13 12 16 16 H 0.96996 * 126.27869 * 359.97438 * 15 14 13 17 17 C 1.36422 * 107.43611 * 180.02562 * 15 14 13 18 18 N 1.30111 * 109.94908 * 0.22470 * 17 15 14 19 19 C 1.35538 * 109.44310 * 359.63473 * 18 17 15 20 20 C 1.40600 * 134.58922 * 180.09367 * 19 18 17 21 21 S 1.76204 * 120.73312 * 0.26633 * 20 19 18 22 22 N 1.32498 * 118.83824 * 0.02562 * 12 11 9 23 23 C 1.50696 * 109.47120 * 264.88011 * 9 7 2 24 24 C 1.38235 * 120.00367 * 277.67560 * 23 9 7 25 25 C 1.38224 * 120.00278 * 179.79035 * 24 23 9 26 26 C 1.38233 * 120.00074 * 0.44307 * 25 24 23 27 27 C 1.38239 * 120.00118 * 359.81100 * 26 25 24 28 28 C 1.38235 * 119.99869 * 97.95408 * 23 9 7 29 29 H 0.97000 * 119.99770 * 0.02562 * 1 2 3 30 30 H 1.07992 * 125.02487 * 179.97438 * 17 15 14 31 31 H 1.40995 * 100.00038 * 89.99855 * 21 20 19 32 32 H 1.08003 * 119.99259 * 0.02562 * 24 23 9 33 33 H 1.08002 * 120.00104 * 180.27871 * 25 24 23 34 34 H 1.08001 * 120.00561 * 179.82956 * 26 25 24 35 35 H 1.07996 * 120.00138 * 179.97438 * 27 26 25 36 36 H 1.08004 * 120.00148 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0812 -1.1960 0.0847 9 6 1.2555 -2.4966 -0.1162 10 1 0.3029 -2.3243 -0.6172 11 8 2.0316 -3.4258 -0.8753 12 6 1.8424 -3.4339 -2.2171 13 7 2.5409 -4.2794 -2.9544 14 6 2.3829 -4.3175 -4.2740 15 7 2.9342 -5.0517 -5.2934 16 1 3.6086 -5.7430 -5.2032 17 6 2.3607 -4.6302 -6.4572 18 7 1.5009 -3.6850 -6.2116 19 6 1.4619 -3.4460 -4.8781 20 6 0.7408 -2.5640 -4.0540 21 16 -0.4306 -1.4425 -4.7431 22 7 0.9634 -2.5938 -2.7436 23 6 1.0052 -3.0573 1.2600 24 6 1.9948 -3.7762 1.9039 25 6 1.7667 -4.2868 3.1680 26 6 0.5458 -4.0863 3.7845 27 6 -0.4457 -3.3718 3.1385 28 6 -0.2160 -2.8575 1.8760 29 1 -0.4850 0.8401 -0.0004 30 1 2.5897 -5.0202 -7.4379 31 1 -1.5922 -2.2401 -4.6925 32 1 2.9475 -3.9358 1.4208 33 1 2.5415 -4.8447 3.6730 34 1 0.3666 -4.4875 4.7711 35 1 -1.3997 -3.2155 3.6200 36 1 -0.9907 -2.2993 1.3713 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226786309.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:11 Heat of formation + Delta-G solvation = 89.621343 kcal Electronic energy + Delta-G solvation = -24748.201470 eV Core-core repulsion = 21132.206883 eV Total energy + Delta-G solvation = -3615.994587 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.63878 -41.11159 -39.91150 -38.31986 -35.38573 -34.93813 -33.32404 -32.56863 -31.60196 -30.63297 -28.70528 -26.15192 -25.64433 -24.26502 -23.22391 -22.81574 -22.04513 -20.53648 -19.92414 -18.95777 -18.51169 -17.96859 -17.56742 -17.37456 -16.99541 -16.47111 -15.96623 -15.79774 -15.52005 -15.36221 -15.25762 -14.79001 -14.28900 -14.09033 -13.74856 -13.41254 -13.25871 -13.02977 -12.98016 -12.80558 -12.48896 -12.17463 -12.00955 -11.91139 -11.71729 -11.40980 -11.17019 -10.76498 -10.65639 -10.16925 -9.64983 -9.46409 -9.35448 -9.20511 -8.22175 -6.36828 -0.81395 0.02492 0.23982 0.63240 0.67547 1.07845 1.35944 1.39004 1.42518 1.46382 1.72025 2.15034 2.37339 2.60331 2.94522 2.98854 3.16442 3.19061 3.47319 3.89617 4.11327 4.20517 4.27674 4.37869 4.49238 4.60726 4.81318 4.90114 5.02518 5.10001 5.29957 5.32429 5.43892 5.60719 5.73011 5.76226 5.92369 6.01523 6.18470 6.24932 6.32284 6.61528 6.70630 7.01815 7.32535 8.82372 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.011300 B = 0.004779 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.299369 B = 5857.158712 C = 7146.698929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.048 3.952 3 Si 0.947 3.053 4 H -0.278 1.278 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.547 4.547 8 H 0.044 0.956 9 C 0.246 3.754 10 H 0.066 0.934 11 O -0.308 6.308 12 C 0.518 3.482 13 N -0.535 5.535 14 C 0.298 3.702 15 N -0.565 5.565 16 H 0.451 0.549 17 C 0.312 3.688 18 N -0.491 5.491 19 C -0.061 4.061 20 C 0.230 3.770 21 S -0.084 6.084 22 N -0.519 5.519 23 C -0.065 4.065 24 C -0.128 4.128 25 C -0.125 4.125 26 C -0.134 4.134 27 C -0.126 4.126 28 C -0.121 4.121 29 H 0.270 0.730 30 H 0.299 0.701 31 H 0.130 0.870 32 H 0.106 0.894 33 H 0.145 0.855 34 H 0.153 0.847 35 H 0.142 0.858 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.999 -11.323 -8.968 14.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.156 4.156 3 Si 0.772 3.228 4 H -0.203 1.203 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.062 0.938 9 C 0.192 3.808 10 H 0.084 0.916 11 O -0.209 6.209 12 C 0.211 3.789 13 N -0.270 5.270 14 C 0.048 3.952 15 N -0.185 5.185 16 H 0.295 0.705 17 C 0.025 3.975 18 N -0.211 5.211 19 C -0.187 4.187 20 C -0.037 4.037 21 S 0.071 5.929 22 N -0.248 5.248 23 C -0.066 4.066 24 C -0.147 4.147 25 C -0.143 4.143 26 C -0.152 4.152 27 C -0.144 4.144 28 C -0.140 4.140 29 H 0.080 0.920 30 H 0.314 0.686 31 H 0.094 0.906 32 H 0.124 0.876 33 H 0.163 0.837 34 H 0.171 0.829 35 H 0.159 0.841 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.150 -10.093 -8.600 13.309 hybrid contribution 0.996 -0.504 0.367 1.175 sum 2.146 -10.597 -8.232 13.589 Atomic orbital electron populations 1.69944 1.06673 1.28127 1.46761 1.25454 0.95662 1.01544 0.92983 0.85736 0.79012 0.79740 0.78297 1.20335 1.19474 1.19729 1.21193 0.92940 0.90722 1.53564 0.93813 1.19146 0.92541 0.84204 0.84865 0.91619 1.85978 1.63698 1.60126 1.11114 1.20385 0.85989 0.85626 0.86907 1.66147 1.29273 1.27331 1.04297 1.18797 0.94695 0.94211 0.87484 1.42893 1.37583 1.34269 1.03725 0.70482 1.27112 0.88011 0.90189 0.92200 1.70403 1.22299 1.17645 1.10789 1.20219 1.03171 1.01609 0.93741 1.22256 0.97619 0.94889 0.88886 1.86724 1.06479 1.22075 1.77626 1.68933 1.20457 1.22452 1.12972 1.20178 0.94170 0.95371 0.96851 1.21008 0.98525 0.99000 0.96146 1.21362 0.98377 1.00314 0.94216 1.21377 0.93116 0.99851 1.00875 1.21336 1.00538 0.98384 0.94095 1.20972 0.96264 0.99920 0.96806 0.92046 0.68616 0.90583 0.87564 0.83701 0.82900 0.84068 0.87626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.66 12.84 21.45 0.28 -49.38 16 2 C 0.05 2.71 5.45 84.66 0.46 3.17 16 3 Si 0.95 44.93 29.54 68.60 2.03 46.95 16 4 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 5 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 7 C -0.55 -31.55 8.63 25.60 0.22 -31.33 16 8 H 0.04 2.61 7.82 -2.91 -0.02 2.59 16 9 C 0.25 13.34 2.14 29.10 0.06 13.41 16 10 H 0.07 3.87 6.06 -2.39 -0.01 3.85 16 11 O -0.31 -16.18 9.07 -88.12 -0.80 -16.98 16 12 C 0.52 25.27 8.43 180.56 1.52 26.80 16 13 N -0.54 -22.46 10.49 -311.38 -3.27 -25.73 16 14 C 0.30 9.93 8.50 133.83 1.14 11.06 16 15 N -0.57 -10.32 6.20 -195.80 -1.21 -11.53 16 16 H 0.45 4.54 8.96 -92.71 -0.83 3.71 16 17 C 0.31 4.41 12.99 179.93 2.34 6.75 16 18 N -0.49 -12.99 11.28 -191.28 -2.16 -15.15 16 19 C -0.06 -2.14 7.07 39.69 0.28 -1.86 16 20 C 0.23 9.57 7.14 85.10 0.61 10.17 16 21 S -0.08 -3.05 26.05 -56.49 -1.47 -4.52 16 22 N -0.52 -25.31 8.61 -308.73 -2.66 -27.97 16 23 C -0.07 -3.19 4.97 -19.87 -0.10 -3.28 16 24 C -0.13 -5.58 9.35 22.27 0.21 -5.37 16 25 C -0.12 -4.31 10.05 22.27 0.22 -4.08 16 26 C -0.13 -4.25 10.05 22.27 0.22 -4.02 16 27 C -0.13 -4.51 10.05 22.27 0.22 -4.28 16 28 C -0.12 -5.48 9.67 22.27 0.22 -5.27 16 29 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 30 H 0.30 -0.37 8.06 -2.91 -0.02 -0.39 16 31 H 0.13 3.96 9.55 73.80 0.70 4.66 16 32 H 0.11 4.70 7.71 -2.91 -0.02 4.68 16 33 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 34 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 35 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 36 H 0.11 5.13 8.05 -2.91 -0.02 5.11 16 Total: -1.00 -78.53 338.58 -0.59 -79.12 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 1.05 Total: 13.35 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 7.63 Total: 11.84 kcal Atomic # 7 Polarization: -120.74 SS G_CDS: -9.02 Total: -129.76 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -0.80 Total: -16.98 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Atomic # 16 Polarization: -3.05 SS G_CDS: -1.47 Total: -4.52 kcal Total: -78.53 -0.59 -79.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226786309.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.739 kcal (2) G-P(sol) polarization free energy of solvation -78.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds