Wall clock time and date at job start Tue Mar 31 2020 14:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32512 * 120.41013 * 2 1 4 4 C 1.31882 * 120.95597 * 180.02562 * 3 2 1 5 5 Cl 1.73604 * 119.11159 * 179.97438 * 4 3 2 6 6 N 1.31923 * 121.77804 * 359.97438 * 4 3 2 7 7 C 1.32781 * 120.70072 * 0.02562 * 6 4 3 8 8 O 1.35516 * 120.50345 * 180.02562 * 7 6 4 9 9 C 1.42906 * 116.99847 * 359.97438 * 8 7 6 10 10 H 1.08996 * 110.77894 * 333.24478 * 9 8 7 11 11 C 1.55157 * 110.72044 * 209.99784 * 9 8 7 12 12 C 1.54901 * 101.58260 * 206.13612 * 11 9 8 13 13 N 1.47426 * 104.83400 * 37.01041 * 12 11 9 14 14 C 1.36942 * 125.64854 * 155.90420 * 13 12 11 15 15 H 1.07998 * 119.99702 * 179.97438 * 14 13 12 16 16 C 1.38807 * 119.99830 * 359.97438 * 14 13 12 17 17 N 1.31616 * 120.00323 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99670 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46927 * 60.00024 * 18 16 14 20 20 H 1.48500 * 109.47008 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47153 * 299.99999 * 18 16 14 22 22 C 1.47019 * 108.70376 * 335.87327 * 13 12 11 23 23 C 1.38190 * 120.40041 * 180.29751 * 2 1 3 24 24 N 1.48020 * 120.80857 * 359.97438 * 23 2 1 25 25 O 1.21797 * 120.00106 * 270.24082 * 24 23 2 26 26 O 1.21800 * 119.99952 * 90.25059 * 24 23 2 27 27 H 1.08999 * 109.46934 * 89.99562 * 1 2 3 28 28 H 1.08997 * 109.47365 * 210.00379 * 1 2 3 29 29 H 1.09006 * 109.46757 * 330.00097 * 1 2 3 30 30 H 1.09002 * 111.00633 * 324.21509 * 11 9 8 31 31 H 1.09002 * 110.99939 * 88.02288 * 11 9 8 32 32 H 1.09004 * 110.36831 * 155.84850 * 12 11 9 33 33 H 1.08999 * 110.37045 * 278.17261 * 12 11 9 34 34 H 0.97003 * 119.99947 * 180.02562 * 17 16 14 35 35 H 1.09000 * 109.88042 * 241.64152 * 22 13 12 36 36 H 1.08996 * 109.88551 * 120.47294 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1778 1.1428 0.0000 4 6 3.4965 1.1554 -0.0005 5 17 4.3266 2.6801 -0.0012 6 7 4.2019 0.0406 -0.0005 7 6 3.5996 -1.1428 -0.0005 8 8 4.3282 -2.2854 0.0000 9 6 5.7506 -2.1479 -0.0001 10 1 6.0479 -1.2051 -0.4592 11 6 6.4180 -3.3463 -0.7251 12 6 7.8120 -3.3808 -0.0506 13 7 7.5583 -3.0293 1.3585 14 6 8.3542 -3.3660 2.4208 15 1 8.0802 -3.0591 3.4193 16 6 9.5129 -4.1018 2.2140 17 7 9.8465 -4.4762 0.9972 18 14 10.5990 -4.5604 3.6631 19 1 9.8201 -5.3806 4.6253 20 1 11.7661 -5.3409 3.1794 21 1 11.0738 -3.3250 4.3365 22 6 6.3097 -2.2569 1.4343 23 6 2.2063 -1.1919 -0.0062 24 7 1.4934 -2.4891 -0.0124 25 8 1.1966 -3.0259 1.0399 26 8 1.2037 -3.0198 -1.0697 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8901 0.5139 30 1 5.8705 -4.2702 -0.5382 31 1 6.5054 -3.1562 -1.7949 32 1 8.2429 -4.3796 -0.1208 33 1 8.4744 -2.6478 -0.5110 34 1 10.6561 -4.9907 0.8528 35 1 6.5129 -1.2616 1.8295 36 1 5.5929 -2.7725 2.0733 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227340920.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:19 Heat of formation + Delta-G solvation = 45.865163 kcal Electronic energy + Delta-G solvation = -25741.251973 eV Core-core repulsion = 21678.174255 eV Total energy + Delta-G solvation = -4063.077718 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.077 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.77645 -41.61147 -39.58890 -37.60284 -36.77813 -36.68602 -35.03041 -33.22842 -32.28836 -30.01257 -29.42761 -27.65569 -26.99477 -24.89614 -24.01506 -23.54320 -21.02675 -20.48430 -19.76738 -19.16629 -19.02700 -18.91886 -17.28241 -16.92706 -16.72151 -16.38997 -15.25110 -14.94915 -14.60319 -14.30966 -14.13946 -13.87506 -13.48042 -13.19369 -12.91570 -12.68876 -12.24351 -12.08684 -12.01897 -11.83311 -11.76145 -11.29685 -11.27787 -11.24574 -11.11895 -10.87601 -10.76942 -10.60882 -10.31585 -10.22244 -10.00446 -9.81362 -9.73959 -8.77851 -7.01553 -5.78152 -3.21391 -0.39844 0.18433 0.27563 0.54773 1.06776 2.11555 2.59099 2.94148 3.35618 3.39665 3.41002 3.52961 3.71386 3.93660 4.39160 4.58788 4.75905 4.80826 4.94905 5.08085 5.27372 5.33811 5.41093 5.54044 5.76652 5.88698 6.02930 6.17865 6.19536 6.28770 6.40584 6.79725 6.93626 7.27975 7.36414 7.47321 7.67711 8.18927 9.07342 9.67227 10.28624 11.26479 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.014437 B = 0.003549 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.939419 B = 7887.110246 C = 9035.001264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.280 3.720 3 N -0.519 5.519 4 C 0.436 3.564 5 Cl 0.062 6.938 6 N -0.544 5.544 7 C 0.448 3.552 8 O -0.270 6.270 9 C 0.065 3.935 10 H 0.106 0.894 11 C -0.139 4.139 12 C 0.155 3.845 13 N -0.599 5.599 14 C -0.228 4.228 15 H 0.079 0.921 16 C -0.007 4.007 17 N -0.923 5.923 18 Si 0.919 3.081 19 H -0.283 1.283 20 H -0.288 1.288 21 H -0.284 1.284 22 C 0.126 3.874 23 C -0.177 4.177 24 N 0.038 4.962 25 O -0.124 6.124 26 O -0.124 6.124 27 H 0.109 0.891 28 H 0.088 0.912 29 H 0.109 0.891 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.118 0.882 33 H 0.021 0.979 34 H 0.256 0.744 35 H 0.034 0.966 36 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.347 11.892 -5.231 21.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.135 3.865 3 N -0.243 5.243 4 C 0.144 3.856 5 Cl 0.090 6.910 6 N -0.280 5.280 7 C 0.260 3.740 8 O -0.170 6.170 9 C 0.010 3.990 10 H 0.123 0.877 11 C -0.178 4.178 12 C 0.030 3.970 13 N -0.326 5.326 14 C -0.356 4.356 15 H 0.097 0.903 16 C -0.202 4.202 17 N -0.571 5.571 18 Si 0.749 3.251 19 H -0.210 1.210 20 H -0.214 1.214 21 H -0.211 1.211 22 C 0.000 4.000 23 C -0.265 4.265 24 N 0.570 4.430 25 O -0.347 6.347 26 O -0.348 6.348 27 H 0.128 0.872 28 H 0.107 0.893 29 H 0.128 0.872 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.136 0.864 33 H 0.039 0.961 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -16.209 13.059 -5.179 21.450 hybrid contribution 0.429 -0.858 0.732 1.207 sum -15.780 12.201 -4.447 20.436 Atomic orbital electron populations 1.21123 0.84965 1.06137 1.05726 1.21348 0.98325 0.83668 0.83179 1.68170 1.07488 1.27536 1.21135 1.23100 0.85940 0.89014 0.87544 1.98501 1.75780 1.21549 1.95153 1.67943 1.39860 0.96591 1.23575 1.19392 0.86160 0.86444 0.82015 1.86479 1.24182 1.23807 1.82554 1.24215 0.71891 1.02520 1.00329 0.87656 1.23374 0.99572 0.95918 0.98902 1.22032 0.88782 1.03942 0.82233 1.44337 1.22396 1.61829 1.04049 1.19028 1.01405 1.28570 0.86595 0.90297 1.24802 0.98080 1.00304 0.97061 1.69714 1.26080 1.42622 1.18653 0.86084 0.79759 0.78167 0.81078 1.20964 1.21395 1.21067 1.21543 0.90437 0.96072 0.91976 1.21660 0.91219 0.87370 1.26222 1.42771 0.98821 1.00732 1.00692 1.94604 1.55258 1.63856 1.21028 1.94580 1.55532 1.64340 1.20377 0.87234 0.89287 0.87208 0.90492 0.91019 0.86439 0.96127 0.93378 0.94768 0.94866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 9.99 36.01 0.36 -0.47 16 2 C 0.28 3.02 6.82 -82.32 -0.56 2.46 16 3 N -0.52 -5.88 10.34 -7.95 -0.08 -5.96 16 4 C 0.44 5.42 8.18 -91.97 -0.75 4.67 16 5 Cl 0.06 0.64 29.27 -51.86 -1.52 -0.88 16 6 N -0.54 -7.90 8.76 -11.69 -0.10 -8.00 16 7 C 0.45 6.86 7.53 -16.70 -0.13 6.73 16 8 O -0.27 -4.69 9.68 -18.24 -0.18 -4.87 16 9 C 0.07 1.19 3.26 -24.89 -0.08 1.11 16 10 H 0.11 1.83 6.99 -51.93 -0.36 1.47 16 11 C -0.14 -2.63 6.81 -24.59 -0.17 -2.80 16 12 C 0.15 3.66 5.89 -2.53 -0.01 3.64 16 13 N -0.60 -15.28 3.39 -170.08 -0.58 -15.86 16 14 C -0.23 -6.31 10.27 -15.06 -0.15 -6.47 16 15 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 16 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 17 N -0.92 -26.23 10.09 55.49 0.56 -25.67 16 18 Si 0.92 21.76 29.55 -169.99 -5.02 16.73 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.13 2.71 7.02 -3.06 -0.02 2.69 16 23 C -0.18 -2.39 6.20 -79.52 -0.49 -2.88 16 24 N 0.04 0.54 3.24 34.17 0.11 0.65 16 25 O -0.12 -1.86 19.21 -29.46 -0.57 -2.43 16 26 O -0.12 -1.80 19.25 -29.46 -0.57 -2.37 16 27 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.09 0.62 7.48 -51.93 -0.39 0.23 16 29 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.12 3.10 5.87 -51.93 -0.30 2.80 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.03 0.74 8.06 -51.93 -0.42 0.32 16 LS Contribution 334.95 15.07 5.05 5.05 Total: -1.00 -29.84 334.95 -8.56 -38.40 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: -3.56 Total: -3.21 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: -2.11 Total: 8.41 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.09 Total: -54.83 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -1.31 Total: -9.67 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 17 Polarization: 0.64 SS G_CDS: -1.52 Total: -0.88 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.84 -8.56 -38.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227340920.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.260 kcal (2) G-P(sol) polarization free energy of solvation -29.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds