Wall clock time and date at job start Tue Mar 31 2020 14:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32512 * 120.41013 * 2 1 4 4 C 1.31882 * 120.95597 * 180.02562 * 3 2 1 5 5 Cl 1.73604 * 119.11159 * 179.97438 * 4 3 2 6 6 N 1.31923 * 121.77804 * 359.97438 * 4 3 2 7 7 C 1.32781 * 120.70072 * 0.02562 * 6 4 3 8 8 O 1.35516 * 120.50345 * 180.02562 * 7 6 4 9 9 C 1.42906 * 116.99847 * 359.97438 * 8 7 6 10 10 H 1.08996 * 110.77894 * 333.24478 * 9 8 7 11 11 C 1.55157 * 110.72044 * 209.99784 * 9 8 7 12 12 C 1.54901 * 101.58260 * 206.13612 * 11 9 8 13 13 N 1.47426 * 104.83400 * 37.01041 * 12 11 9 14 14 C 1.36942 * 125.64854 * 155.90420 * 13 12 11 15 15 H 1.07998 * 119.99702 * 179.97438 * 14 13 12 16 16 C 1.38807 * 119.99830 * 359.97438 * 14 13 12 17 17 N 1.31616 * 120.00323 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99670 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46927 * 60.00024 * 18 16 14 20 20 H 1.48500 * 109.47008 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47153 * 299.99999 * 18 16 14 22 22 C 1.47019 * 108.70376 * 335.87327 * 13 12 11 23 23 C 1.38190 * 120.40041 * 180.29751 * 2 1 3 24 24 N 1.48020 * 120.80857 * 359.97438 * 23 2 1 25 25 O 1.21797 * 120.00106 * 270.24082 * 24 23 2 26 26 O 1.21800 * 119.99952 * 90.25059 * 24 23 2 27 27 H 1.08999 * 109.46934 * 89.99562 * 1 2 3 28 28 H 1.08997 * 109.47365 * 210.00379 * 1 2 3 29 29 H 1.09006 * 109.46757 * 330.00097 * 1 2 3 30 30 H 1.09002 * 111.00633 * 324.21509 * 11 9 8 31 31 H 1.09002 * 110.99939 * 88.02288 * 11 9 8 32 32 H 1.09004 * 110.36831 * 155.84850 * 12 11 9 33 33 H 1.08999 * 110.37045 * 278.17261 * 12 11 9 34 34 H 0.97003 * 119.99947 * 180.02562 * 17 16 14 35 35 H 1.09000 * 109.88042 * 241.64152 * 22 13 12 36 36 H 1.08996 * 109.88551 * 120.47294 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1778 1.1428 0.0000 4 6 3.4965 1.1554 -0.0005 5 17 4.3266 2.6801 -0.0012 6 7 4.2019 0.0406 -0.0005 7 6 3.5996 -1.1428 -0.0005 8 8 4.3282 -2.2854 0.0000 9 6 5.7506 -2.1479 -0.0001 10 1 6.0479 -1.2051 -0.4592 11 6 6.4180 -3.3463 -0.7251 12 6 7.8120 -3.3808 -0.0506 13 7 7.5583 -3.0293 1.3585 14 6 8.3542 -3.3660 2.4208 15 1 8.0802 -3.0591 3.4193 16 6 9.5129 -4.1018 2.2140 17 7 9.8465 -4.4762 0.9972 18 14 10.5990 -4.5604 3.6631 19 1 9.8201 -5.3806 4.6253 20 1 11.7661 -5.3409 3.1794 21 1 11.0738 -3.3250 4.3365 22 6 6.3097 -2.2569 1.4343 23 6 2.2063 -1.1919 -0.0062 24 7 1.4934 -2.4891 -0.0124 25 8 1.1966 -3.0259 1.0399 26 8 1.2037 -3.0198 -1.0697 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8901 0.5139 30 1 5.8705 -4.2702 -0.5382 31 1 6.5054 -3.1562 -1.7949 32 1 8.2429 -4.3796 -0.1208 33 1 8.4744 -2.6478 -0.5110 34 1 10.6561 -4.9907 0.8528 35 1 6.5129 -1.2616 1.8295 36 1 5.5929 -2.7725 2.0733 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227340920.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:18 Heat of formation + Delta-G solvation = 27.616303 kcal Electronic energy + Delta-G solvation = -25742.043303 eV Core-core repulsion = 21678.174255 eV Total energy + Delta-G solvation = -4063.869048 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.077 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -43.84538 -42.69330 -40.89483 -38.59588 -38.35992 -37.81063 -36.01319 -34.66349 -33.86547 -31.39954 -30.71533 -29.30263 -28.09826 -26.71899 -25.08591 -24.67889 -22.43608 -22.32925 -20.85815 -20.34010 -20.14137 -20.08348 -19.08987 -18.16059 -17.85816 -17.45601 -16.91410 -16.50556 -16.12374 -15.63203 -15.19980 -14.97289 -14.62008 -14.48094 -14.17538 -13.88693 -13.67985 -13.50479 -13.19170 -13.02988 -12.94107 -12.89978 -12.72308 -12.50056 -12.43967 -12.39004 -12.30368 -12.10903 -11.95976 -11.73870 -11.61648 -11.32758 -11.03545 -10.82822 -9.04549 -7.86589 -5.33171 -1.38839 -0.86797 -0.83476 -0.41299 0.02217 0.92499 1.45558 1.48560 1.55151 1.58976 1.97209 2.42842 2.51515 2.74028 2.93917 3.25151 3.39798 3.48221 3.71416 3.77524 3.89731 4.19063 4.32903 4.37008 4.49684 4.53526 4.64992 4.72591 4.77382 4.87759 4.93045 5.33402 5.39691 5.45981 5.66301 5.90821 6.18578 6.21469 6.99820 7.63415 8.25103 9.15712 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.014437 B = 0.003549 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.939419 B = 7887.110246 C = 9035.001264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.292 3.708 3 N -0.509 5.509 4 C 0.433 3.567 5 Cl 0.081 6.919 6 N -0.561 5.561 7 C 0.433 3.567 8 O -0.283 6.283 9 C 0.086 3.914 10 H 0.117 0.883 11 C -0.125 4.125 12 C 0.157 3.843 13 N -0.621 5.621 14 C -0.251 4.251 15 H 0.079 0.921 16 C -0.057 4.057 17 N -0.945 5.945 18 Si 0.984 3.016 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.277 1.277 22 C 0.126 3.874 23 C -0.186 4.186 24 N 0.041 4.959 25 O -0.146 6.146 26 O -0.119 6.119 27 H 0.134 0.866 28 H 0.088 0.912 29 H 0.133 0.867 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.006 0.994 34 H 0.252 0.748 35 H 0.036 0.964 36 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.918 13.317 -5.457 23.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.147 3.853 3 N -0.233 5.233 4 C 0.141 3.859 5 Cl 0.110 6.890 6 N -0.296 5.296 7 C 0.245 3.755 8 O -0.185 6.185 9 C 0.031 3.969 10 H 0.135 0.865 11 C -0.163 4.163 12 C 0.033 3.967 13 N -0.348 5.348 14 C -0.379 4.379 15 H 0.097 0.903 16 C -0.250 4.250 17 N -0.594 5.594 18 Si 0.811 3.189 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.203 1.203 22 C 0.000 4.000 23 C -0.273 4.273 24 N 0.572 4.428 25 O -0.365 6.365 26 O -0.346 6.346 27 H 0.152 0.848 28 H 0.107 0.893 29 H 0.151 0.849 30 H 0.091 0.909 31 H 0.122 0.878 32 H 0.105 0.895 33 H 0.024 0.976 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -17.822 14.517 -5.366 23.604 hybrid contribution 0.821 -1.177 0.772 1.629 sum -17.001 13.340 -4.595 22.093 Atomic orbital electron populations 1.21369 0.81774 1.07269 1.07448 1.22058 1.00000 0.82373 0.80866 1.68348 1.06832 1.27361 1.20717 1.23408 0.86462 0.89181 0.86861 1.98511 1.75581 1.20048 1.94903 1.67901 1.40462 0.96853 1.24395 1.19510 0.86613 0.86232 0.83099 1.86425 1.23268 1.25217 1.83547 1.23796 0.72845 1.02515 0.97772 0.86504 1.23167 0.96575 0.96241 1.00359 1.21798 0.91257 1.01618 0.82054 1.44605 1.23361 1.62527 1.04322 1.19369 1.02175 1.28892 0.87450 0.90272 1.25635 0.99359 1.00373 0.99639 1.69951 1.26154 1.42960 1.20288 0.85082 0.77781 0.77907 0.78103 1.20351 1.21450 1.20292 1.21586 0.88909 0.95232 0.94262 1.21811 0.90566 0.87645 1.27294 1.42865 0.98595 1.00934 1.00448 1.94609 1.56241 1.64425 1.21190 1.94565 1.55221 1.64480 1.20362 0.84848 0.89286 0.84857 0.90924 0.87791 0.89472 0.97558 0.93822 0.94646 0.95861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 9.99 71.24 0.71 -0.53 16 2 C 0.29 5.58 6.82 42.44 0.29 5.87 16 3 N -0.51 -10.24 10.34 -179.07 -1.85 -12.09 16 4 C 0.43 9.95 8.18 180.82 1.48 11.43 16 5 Cl 0.08 1.53 29.27 -2.72 -0.08 1.45 16 6 N -0.56 -15.54 8.76 -303.58 -2.66 -18.20 16 7 C 0.43 12.81 7.53 84.83 0.64 13.44 16 8 O -0.28 -9.66 9.68 -88.18 -0.85 -10.52 16 9 C 0.09 3.11 3.26 31.78 0.10 3.21 16 10 H 0.12 3.95 6.99 -2.39 -0.02 3.93 16 11 C -0.13 -4.68 6.81 31.98 0.22 -4.47 16 12 C 0.16 7.60 5.89 86.85 0.51 8.12 16 13 N -0.62 -32.36 3.39 -692.00 -2.35 -34.70 16 14 C -0.25 -14.13 10.27 84.03 0.86 -13.27 16 15 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 16 C -0.06 -3.18 5.49 84.86 0.47 -2.72 16 17 N -0.95 -54.95 10.09 21.65 0.22 -54.73 16 18 Si 0.98 45.09 29.55 68.60 2.03 47.12 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 20 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 21 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 22 C 0.13 5.48 7.02 86.73 0.61 6.09 16 23 C -0.19 -4.73 6.20 36.65 0.23 -4.50 16 24 N 0.04 1.12 3.24 -45.81 -0.15 0.97 16 25 O -0.15 -4.29 19.21 18.89 0.36 -3.93 16 26 O -0.12 -3.28 19.25 18.89 0.36 -2.92 16 27 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.09 0.99 7.48 -2.39 -0.02 0.97 16 29 H 0.13 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.07 2.78 8.14 -2.39 -0.02 2.77 16 31 H 0.10 3.21 8.14 -2.39 -0.02 3.20 16 32 H 0.09 4.77 5.87 -2.38 -0.01 4.75 16 33 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 35 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.02 1.06 8.06 -2.39 -0.02 1.04 16 Total: -1.00 -65.07 334.95 2.29 -62.79 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: 1.14 Total: 2.09 kcal Atomic # 6 Polarization: 16.56 SS G_CDS: 6.12 Total: 22.67 kcal Atomic # 7 Polarization: -111.96 SS G_CDS: -6.79 Total: -118.75 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.13 Total: -17.36 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Atomic # 17 Polarization: 1.53 SS G_CDS: -0.08 Total: 1.45 kcal Total: -65.07 2.29 -62.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227340920.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.403 kcal (2) G-P(sol) polarization free energy of solvation -65.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds