Wall clock time and date at job start Tue Mar 31 2020 14:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.32513 * 120.40247 * 2 1 4 4 C 1.31890 * 120.95070 * 179.97438 * 3 2 1 5 5 Cl 1.73605 * 119.11012 * 179.97438 * 4 3 2 6 6 N 1.31919 * 121.77930 * 359.73784 * 4 3 2 7 7 C 1.32784 * 120.70124 * 0.52156 * 6 4 3 8 8 O 1.35509 * 120.50245 * 179.76376 * 7 6 4 9 9 C 1.42901 * 117.00347 * 359.72674 * 8 7 6 10 10 H 1.09002 * 110.64076 * 29.29503 * 9 8 7 11 11 C 1.55157 * 110.87223 * 152.54523 * 9 8 7 12 12 C 1.54909 * 101.57958 * 153.93568 * 11 9 8 13 13 N 1.47426 * 104.83381 * 322.98989 * 12 11 9 14 14 C 1.36937 * 125.65098 * 204.09440 * 13 12 11 15 15 H 1.08000 * 120.00262 * 180.02562 * 14 13 12 16 16 C 1.38813 * 119.99548 * 0.03593 * 14 13 12 17 17 N 1.31615 * 120.00732 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99599 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47056 * 60.00557 * 18 16 14 20 20 H 1.48508 * 109.47207 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47333 * 300.00490 * 18 16 14 22 22 C 1.47018 * 108.70104 * 24.12870 * 13 12 11 23 23 C 1.38184 * 120.40133 * 179.97438 * 2 1 3 24 24 N 1.48010 * 120.81479 * 0.02562 * 23 2 1 25 25 O 1.21796 * 120.00251 * 270.02302 * 24 23 2 26 26 O 1.21807 * 120.00002 * 90.01471 * 24 23 2 27 27 H 1.08999 * 109.47722 * 270.02498 * 1 2 3 28 28 H 1.09001 * 109.47575 * 30.02758 * 1 2 3 29 29 H 1.09000 * 109.47355 * 150.02406 * 1 2 3 30 30 H 1.09000 * 111.00495 * 272.00951 * 11 9 8 31 31 H 1.08997 * 111.00429 * 35.86529 * 11 9 8 32 32 H 1.08998 * 110.36917 * 204.14700 * 12 11 9 33 33 H 1.09009 * 110.46209 * 81.87337 * 12 11 9 34 34 H 0.96996 * 120.00556 * 179.97438 * 17 16 14 35 35 H 1.08998 * 109.88222 * 239.52595 * 22 13 12 36 36 H 1.09004 * 109.88300 * 118.35961 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1775 1.1429 0.0000 4 6 3.4964 1.1555 0.0005 5 17 4.3264 2.6803 -0.0002 6 7 4.2018 0.0408 0.0062 7 6 3.5996 -1.1426 0.0012 8 8 4.3283 -2.2851 0.0022 9 6 5.7506 -2.1476 0.0027 10 1 6.0472 -1.2248 0.5014 11 6 6.4244 -3.3744 0.6722 12 6 7.8158 -3.3752 -0.0089 13 7 7.5551 -2.9635 -1.4003 14 6 8.3474 -3.2511 -2.4795 15 1 8.0685 -2.9019 -3.4626 16 6 9.5091 -3.9918 -2.3097 17 7 9.8488 -4.4181 -1.1118 18 14 10.5896 -4.3848 -3.7820 19 1 11.0581 -3.1202 -4.4038 20 1 11.7611 -5.1821 -3.3376 21 1 9.8085 -5.1650 -4.7751 22 6 6.3040 -2.1923 -1.4372 23 6 2.2062 -1.1918 0.0005 24 7 1.4935 -2.4891 0.0005 25 8 1.1995 -3.0224 1.0553 26 8 1.2009 -3.0232 -1.0543 27 1 -0.3634 0.0004 1.0276 28 1 -0.3634 0.8897 -0.5143 29 1 -0.3634 -0.8902 -0.5134 30 1 6.5165 -3.2305 1.7487 31 1 5.8789 -4.2908 0.4473 32 1 8.2498 -4.3747 0.0161 33 1 8.4796 -2.6618 0.4797 34 1 10.6604 -4.9360 -0.9932 35 1 5.5860 -2.6818 -2.0951 36 1 6.5027 -1.1801 -1.7895 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227340921.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:23 Heat of formation + Delta-G solvation = 45.784272 kcal Electronic energy + Delta-G solvation = -25752.195289 eV Core-core repulsion = 21689.114064 eV Total energy + Delta-G solvation = -4063.081226 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.077 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -42.77472 -41.60912 -39.58992 -37.59812 -36.77558 -36.68475 -35.02812 -33.22640 -32.28841 -30.00994 -29.43096 -27.64870 -26.99593 -24.90106 -24.01025 -23.54144 -21.02783 -20.48713 -19.76449 -19.16978 -19.02637 -18.90019 -17.28458 -16.92728 -16.72811 -16.37859 -15.27456 -14.95099 -14.60126 -14.29904 -14.13872 -13.86666 -13.47625 -13.19166 -12.91066 -12.68928 -12.24629 -12.08038 -12.01471 -11.83231 -11.76099 -11.29453 -11.27440 -11.24341 -11.11956 -10.87507 -10.77263 -10.60425 -10.31448 -10.22248 -10.00599 -9.82333 -9.73601 -8.77827 -7.01595 -5.78185 -3.21380 -0.39526 0.18745 0.27610 0.55174 1.06977 2.11570 2.59479 2.94536 3.35562 3.39626 3.40942 3.53297 3.71586 3.93948 4.39081 4.59000 4.76074 4.81017 4.94584 5.08155 5.27542 5.33652 5.40856 5.53875 5.76905 5.89043 6.02948 6.17919 6.19232 6.28654 6.40734 6.79692 6.93775 7.27893 7.36460 7.47245 7.67686 8.18895 9.07310 9.67205 10.28636 11.26469 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.014356 B = 0.003570 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.896547 B = 7841.521886 C = 8988.555180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.280 3.720 3 N -0.519 5.519 4 C 0.436 3.564 5 Cl 0.062 6.938 6 N -0.544 5.544 7 C 0.448 3.552 8 O -0.270 6.270 9 C 0.066 3.934 10 H 0.104 0.896 11 C -0.138 4.138 12 C 0.155 3.845 13 N -0.599 5.599 14 C -0.228 4.228 15 H 0.079 0.921 16 C -0.007 4.007 17 N -0.923 5.923 18 Si 0.919 3.081 19 H -0.284 1.284 20 H -0.288 1.288 21 H -0.283 1.283 22 C 0.126 3.874 23 C -0.177 4.177 24 N 0.038 4.962 25 O -0.124 6.124 26 O -0.124 6.124 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.118 0.882 33 H 0.021 0.979 34 H 0.256 0.744 35 H 0.033 0.967 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.333 11.625 5.498 21.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.135 3.865 3 N -0.243 5.243 4 C 0.144 3.856 5 Cl 0.090 6.910 6 N -0.279 5.279 7 C 0.260 3.740 8 O -0.171 6.171 9 C 0.011 3.989 10 H 0.122 0.878 11 C -0.177 4.177 12 C 0.030 3.970 13 N -0.326 5.326 14 C -0.356 4.356 15 H 0.097 0.903 16 C -0.202 4.202 17 N -0.571 5.571 18 Si 0.749 3.251 19 H -0.211 1.211 20 H -0.214 1.214 21 H -0.210 1.210 22 C -0.001 4.001 23 C -0.265 4.265 24 N 0.570 4.430 25 O -0.348 6.348 26 O -0.347 6.347 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.136 0.864 33 H 0.039 0.961 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -16.195 12.794 5.450 21.346 hybrid contribution 0.427 -0.823 -0.743 1.188 sum -15.768 11.971 4.707 20.349 Atomic orbital electron populations 1.21119 0.84972 1.06125 1.05726 1.21343 0.98322 0.83671 0.83196 1.68177 1.07492 1.27524 1.21130 1.23104 0.85937 0.89023 0.87542 1.98501 1.75785 1.21543 1.95151 1.67955 1.39849 0.96584 1.23529 1.19393 0.86146 0.86434 0.82026 1.86469 1.24179 1.23838 1.82576 1.24199 0.71892 1.02421 1.00350 0.87800 1.23363 0.99459 0.95559 0.99275 1.22036 0.88810 1.03712 0.82457 1.44334 1.22216 1.61192 1.04865 1.19028 1.01347 1.28434 0.86786 0.90303 1.24801 0.98059 1.00199 0.97185 1.69708 1.25859 1.41540 1.19968 0.86086 0.79733 0.78029 0.81249 1.21067 1.21393 1.20967 1.21556 0.90443 0.96135 0.91946 1.21658 0.91218 0.87364 1.26230 1.42770 0.98819 1.00735 1.00692 1.94578 1.55360 1.64155 1.20745 1.94607 1.55422 1.64059 1.20659 0.87234 0.87209 0.89308 0.90985 0.90479 0.86442 0.96109 0.93374 0.94926 0.94740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 10.00 36.00 0.36 -0.47 16 2 C 0.28 3.03 6.82 -82.32 -0.56 2.47 16 3 N -0.52 -5.90 10.34 -7.96 -0.08 -5.98 16 4 C 0.44 5.44 8.18 -91.96 -0.75 4.69 16 5 Cl 0.06 0.64 29.27 -51.86 -1.52 -0.87 16 6 N -0.54 -7.91 8.80 -11.69 -0.10 -8.02 16 7 C 0.45 6.87 7.53 -16.70 -0.13 6.75 16 8 O -0.27 -4.70 9.69 -18.22 -0.18 -4.87 16 9 C 0.07 1.21 3.21 -24.90 -0.08 1.13 16 10 H 0.10 1.81 7.07 -51.93 -0.37 1.44 16 11 C -0.14 -2.61 6.82 -24.58 -0.17 -2.78 16 12 C 0.15 3.65 5.89 -2.53 -0.01 3.63 16 13 N -0.60 -15.28 3.39 -170.07 -0.58 -15.86 16 14 C -0.23 -6.31 10.27 -15.06 -0.15 -6.47 16 15 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 16 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 17 N -0.92 -26.22 10.09 55.49 0.56 -25.66 16 18 Si 0.92 21.76 29.55 -169.99 -5.02 16.73 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C 0.13 2.70 7.02 -3.07 -0.02 2.68 16 23 C -0.18 -2.39 6.20 -79.53 -0.49 -2.89 16 24 N 0.04 0.54 3.24 34.17 0.11 0.65 16 25 O -0.12 -1.80 19.25 -29.46 -0.57 -2.37 16 26 O -0.12 -1.87 19.22 -29.46 -0.57 -2.43 16 27 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.09 0.62 7.47 -51.93 -0.39 0.23 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.12 3.10 5.87 -51.93 -0.30 2.80 16 33 H 0.02 0.51 8.14 -51.92 -0.42 0.09 16 34 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.03 0.73 8.06 -51.93 -0.42 0.31 16 36 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 335.02 15.07 5.05 5.05 Total: -1.00 -29.84 335.02 -8.56 -38.40 By element: Atomic # 1 Polarization: 0.32 SS G_CDS: -3.56 Total: -3.24 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: -2.11 Total: 8.47 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -0.09 Total: -54.86 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -1.31 Total: -9.68 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 17 Polarization: 0.64 SS G_CDS: -1.52 Total: -0.87 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.84 -8.56 -38.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227340921.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.181 kcal (2) G-P(sol) polarization free energy of solvation -29.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds