Wall clock time and date at job start Tue Mar 31 2020 14:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.32513 * 120.40247 * 2 1 4 4 C 1.31890 * 120.95070 * 179.97438 * 3 2 1 5 5 Cl 1.73605 * 119.11012 * 179.97438 * 4 3 2 6 6 N 1.31919 * 121.77930 * 359.73784 * 4 3 2 7 7 C 1.32784 * 120.70124 * 0.52156 * 6 4 3 8 8 O 1.35509 * 120.50245 * 179.76376 * 7 6 4 9 9 C 1.42901 * 117.00347 * 359.72674 * 8 7 6 10 10 H 1.09002 * 110.64076 * 29.29503 * 9 8 7 11 11 C 1.55157 * 110.87223 * 152.54523 * 9 8 7 12 12 C 1.54909 * 101.57958 * 153.93568 * 11 9 8 13 13 N 1.47426 * 104.83381 * 322.98989 * 12 11 9 14 14 C 1.36937 * 125.65098 * 204.09440 * 13 12 11 15 15 H 1.08000 * 120.00262 * 180.02562 * 14 13 12 16 16 C 1.38813 * 119.99548 * 0.03593 * 14 13 12 17 17 N 1.31615 * 120.00732 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99599 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47056 * 60.00557 * 18 16 14 20 20 H 1.48508 * 109.47207 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47333 * 300.00490 * 18 16 14 22 22 C 1.47018 * 108.70104 * 24.12870 * 13 12 11 23 23 C 1.38184 * 120.40133 * 179.97438 * 2 1 3 24 24 N 1.48010 * 120.81479 * 0.02562 * 23 2 1 25 25 O 1.21796 * 120.00251 * 270.02302 * 24 23 2 26 26 O 1.21807 * 120.00002 * 90.01471 * 24 23 2 27 27 H 1.08999 * 109.47722 * 270.02498 * 1 2 3 28 28 H 1.09001 * 109.47575 * 30.02758 * 1 2 3 29 29 H 1.09000 * 109.47355 * 150.02406 * 1 2 3 30 30 H 1.09000 * 111.00495 * 272.00951 * 11 9 8 31 31 H 1.08997 * 111.00429 * 35.86529 * 11 9 8 32 32 H 1.08998 * 110.36917 * 204.14700 * 12 11 9 33 33 H 1.09009 * 110.46209 * 81.87337 * 12 11 9 34 34 H 0.96996 * 120.00556 * 179.97438 * 17 16 14 35 35 H 1.08998 * 109.88222 * 239.52595 * 22 13 12 36 36 H 1.09004 * 109.88300 * 118.35961 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1775 1.1429 0.0000 4 6 3.4964 1.1555 0.0005 5 17 4.3264 2.6803 -0.0002 6 7 4.2018 0.0408 0.0062 7 6 3.5996 -1.1426 0.0012 8 8 4.3283 -2.2851 0.0022 9 6 5.7506 -2.1476 0.0027 10 1 6.0472 -1.2248 0.5014 11 6 6.4244 -3.3744 0.6722 12 6 7.8158 -3.3752 -0.0089 13 7 7.5551 -2.9635 -1.4003 14 6 8.3474 -3.2511 -2.4795 15 1 8.0685 -2.9019 -3.4626 16 6 9.5091 -3.9918 -2.3097 17 7 9.8488 -4.4181 -1.1118 18 14 10.5896 -4.3848 -3.7820 19 1 11.0581 -3.1202 -4.4038 20 1 11.7611 -5.1821 -3.3376 21 1 9.8085 -5.1650 -4.7751 22 6 6.3040 -2.1923 -1.4372 23 6 2.2062 -1.1918 0.0005 24 7 1.4935 -2.4891 0.0005 25 8 1.1995 -3.0224 1.0553 26 8 1.2009 -3.0232 -1.0543 27 1 -0.3634 0.0004 1.0276 28 1 -0.3634 0.8897 -0.5143 29 1 -0.3634 -0.8902 -0.5134 30 1 6.5165 -3.2305 1.7487 31 1 5.8789 -4.2908 0.4473 32 1 8.2498 -4.3747 0.0161 33 1 8.4796 -2.6618 0.4797 34 1 10.6604 -4.9360 -0.9932 35 1 5.5860 -2.6818 -2.0951 36 1 6.5027 -1.1801 -1.7895 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227340921.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:22 Heat of formation + Delta-G solvation = 27.526940 kcal Electronic energy + Delta-G solvation = -25752.986986 eV Core-core repulsion = 21689.114064 eV Total energy + Delta-G solvation = -4063.872923 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.077 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -43.84533 -42.69277 -40.89650 -38.59449 -38.35864 -37.80994 -36.01310 -34.66312 -33.86593 -31.40037 -30.71665 -29.29667 -28.10094 -26.72168 -25.08453 -24.67991 -22.43759 -22.32917 -20.85661 -20.34286 -20.14103 -20.07068 -19.09006 -18.16635 -17.86936 -17.44618 -16.91616 -16.52650 -16.12464 -15.61870 -15.19600 -14.97204 -14.61878 -14.48054 -14.17210 -13.88668 -13.67957 -13.51025 -13.18558 -13.02848 -12.93997 -12.89941 -12.72273 -12.50278 -12.43953 -12.39083 -12.30325 -12.10931 -11.95761 -11.74099 -11.61632 -11.33138 -11.03679 -10.82795 -9.04610 -7.86628 -5.33168 -1.38805 -0.86753 -0.83406 -0.41241 0.02242 0.92361 1.45484 1.48476 1.55060 1.59077 1.97412 2.42803 2.51523 2.74105 2.94035 3.25087 3.39560 3.48295 3.71258 3.77596 3.89256 4.18968 4.32935 4.36981 4.49478 4.53795 4.64958 4.72611 4.77453 4.87827 4.93108 5.33407 5.39478 5.45879 5.66345 5.90901 6.18593 6.21499 6.99796 7.63389 8.25102 9.15687 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.014356 B = 0.003570 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.896547 B = 7841.521886 C = 8988.555180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.292 3.708 3 N -0.509 5.509 4 C 0.432 3.568 5 Cl 0.081 6.919 6 N -0.560 5.560 7 C 0.433 3.567 8 O -0.283 6.283 9 C 0.087 3.913 10 H 0.116 0.884 11 C -0.124 4.124 12 C 0.157 3.843 13 N -0.621 5.621 14 C -0.251 4.251 15 H 0.079 0.921 16 C -0.057 4.057 17 N -0.945 5.945 18 Si 0.984 3.016 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.278 1.278 22 C 0.126 3.874 23 C -0.185 4.185 24 N 0.041 4.959 25 O -0.118 6.118 26 O -0.146 6.146 27 H 0.134 0.866 28 H 0.133 0.867 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.007 0.993 34 H 0.252 0.748 35 H 0.023 0.977 36 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.908 13.031 5.759 23.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.147 3.853 3 N -0.233 5.233 4 C 0.141 3.859 5 Cl 0.109 6.891 6 N -0.296 5.296 7 C 0.245 3.755 8 O -0.185 6.185 9 C 0.032 3.968 10 H 0.134 0.866 11 C -0.162 4.162 12 C 0.032 3.968 13 N -0.348 5.348 14 C -0.379 4.379 15 H 0.097 0.903 16 C -0.250 4.250 17 N -0.593 5.593 18 Si 0.811 3.189 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.204 1.204 22 C 0.000 4.000 23 C -0.273 4.273 24 N 0.572 4.428 25 O -0.346 6.346 26 O -0.365 6.365 27 H 0.152 0.848 28 H 0.151 0.849 29 H 0.107 0.893 30 H 0.123 0.877 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.025 0.975 34 H 0.062 0.938 35 H 0.041 0.959 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -17.811 14.232 5.671 23.493 hybrid contribution 0.820 -1.138 -0.790 1.610 sum -16.991 13.095 4.880 21.999 Atomic orbital electron populations 1.21366 0.81776 1.07249 1.07459 1.22054 1.00000 0.82377 0.80884 1.68354 1.06830 1.27356 1.20715 1.23410 0.86463 0.89185 0.86871 1.98511 1.75592 1.20057 1.94904 1.67913 1.40459 0.96853 1.24355 1.19513 0.86605 0.86224 0.83108 1.86415 1.23264 1.25231 1.83562 1.23783 0.72845 1.02395 0.97826 0.86640 1.23156 0.96473 0.95861 1.00741 1.21804 0.91276 1.01395 0.82276 1.44603 1.23186 1.61924 1.05099 1.19367 1.02117 1.28739 0.87664 0.90293 1.25633 0.99320 1.00192 0.99853 1.69945 1.25928 1.41869 1.21608 0.85085 0.77772 0.77855 0.78170 1.20294 1.21445 1.20354 1.21595 0.88893 0.95286 0.94230 1.21809 0.90565 0.87648 1.27292 1.42862 0.98594 1.00930 1.00449 1.94563 1.55008 1.64275 1.20723 1.94612 1.56440 1.64633 1.20828 0.84829 0.84865 0.89310 0.87731 0.90900 0.89470 0.97544 0.93815 0.95948 0.94652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 10.00 71.23 0.71 -0.54 16 2 C 0.29 5.60 6.82 42.44 0.29 5.89 16 3 N -0.51 -10.29 10.34 -179.08 -1.85 -12.14 16 4 C 0.43 10.00 8.18 180.82 1.48 11.48 16 5 Cl 0.08 1.54 29.27 -2.72 -0.08 1.46 16 6 N -0.56 -15.60 8.80 -303.57 -2.67 -18.27 16 7 C 0.43 12.84 7.53 84.84 0.64 13.47 16 8 O -0.28 -9.67 9.69 -88.11 -0.85 -10.52 16 9 C 0.09 3.13 3.21 31.78 0.10 3.23 16 10 H 0.12 3.90 7.07 -2.39 -0.02 3.88 16 11 C -0.12 -4.63 6.82 31.99 0.22 -4.42 16 12 C 0.16 7.59 5.89 86.85 0.51 8.10 16 13 N -0.62 -32.35 3.39 -691.98 -2.35 -34.70 16 14 C -0.25 -14.13 10.27 84.03 0.86 -13.27 16 15 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 16 C -0.06 -3.18 5.49 84.86 0.47 -2.71 16 17 N -0.94 -54.92 10.09 21.65 0.22 -54.71 16 18 Si 0.98 45.09 29.55 68.60 2.03 47.12 16 19 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 21 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 22 C 0.13 5.48 7.02 86.73 0.61 6.08 16 23 C -0.19 -4.74 6.20 36.65 0.23 -4.51 16 24 N 0.04 1.12 3.24 -45.82 -0.15 0.97 16 25 O -0.12 -3.25 19.25 18.89 0.36 -2.89 16 26 O -0.15 -4.32 19.22 18.88 0.36 -3.96 16 27 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.09 0.99 7.47 -2.39 -0.02 0.97 16 30 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 31 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 32 H 0.09 4.76 5.87 -2.39 -0.01 4.75 16 33 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 34 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 35 H 0.02 1.02 8.06 -2.39 -0.02 1.00 16 36 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -65.08 335.02 2.28 -62.80 By element: Atomic # 1 Polarization: 0.87 SS G_CDS: 1.14 Total: 2.02 kcal Atomic # 6 Polarization: 16.70 SS G_CDS: 6.11 Total: 22.81 kcal Atomic # 7 Polarization: -112.04 SS G_CDS: -6.80 Total: -118.84 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.13 Total: -17.36 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Atomic # 17 Polarization: 1.54 SS G_CDS: -0.08 Total: 1.46 kcal Total: -65.08 2.28 -62.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227340921.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.326 kcal (2) G-P(sol) polarization free energy of solvation -65.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds