Wall clock time and date at job start Tue Mar 31 2020 15:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00035 * 2 1 4 4 H 1.48504 * 109.46706 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47290 * 299.99369 * 3 2 1 6 6 H 1.48501 * 109.47406 * 60.00030 * 3 2 1 7 7 C 1.37875 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00378 * 188.90556 * 7 2 1 9 9 C 1.50700 * 119.99950 * 8.91242 * 7 2 1 10 10 H 1.09008 * 109.46991 * 185.48680 * 9 7 2 11 11 O 1.42902 * 109.47264 * 305.48571 * 9 7 2 12 12 C 1.35988 * 116.99970 * 279.62413 * 11 9 7 13 13 C 1.36024 * 119.20231 * 5.67385 * 12 11 9 14 14 C 1.41201 * 119.51041 * 180.02562 * 13 12 11 15 15 C 1.38224 * 134.72981 * 179.97438 * 14 13 12 16 16 N 1.34106 * 107.89914 * 180.02562 * 15 14 13 17 17 H 0.96996 * 125.03353 * 179.97438 * 16 15 14 18 18 N 1.39956 * 109.92865 * 359.97438 * 16 15 14 19 19 C 1.32119 * 108.95217 * 359.97438 * 18 16 15 20 20 C 1.41172 * 134.57224 * 180.02562 * 19 18 16 21 21 C 1.35660 * 119.66094 * 180.08810 * 20 19 18 22 22 Cl 1.73609 * 119.12081 * 179.97438 * 21 20 19 23 23 C 1.50704 * 109.47551 * 65.48598 * 9 7 2 24 24 C 1.38232 * 120.00016 * 268.72141 * 23 9 7 25 25 C 1.38232 * 119.99515 * 179.80750 * 24 23 9 26 26 C 1.38240 * 120.00406 * 0.39564 * 25 24 23 27 27 C 1.38239 * 119.99629 * 359.85668 * 26 25 24 28 28 C 1.38233 * 119.99881 * 359.95758 * 27 26 25 29 29 H 0.96999 * 119.99786 * 0.02562 * 1 2 3 30 30 H 1.07994 * 120.24253 * 359.97438 * 13 12 11 31 31 H 1.08001 * 126.05057 * 0.05894 * 15 14 13 32 32 H 1.07996 * 120.17083 * 359.97100 * 20 19 18 33 33 H 1.07997 * 119.99980 * 359.97438 * 24 23 9 34 34 H 1.08002 * 120.00022 * 180.23357 * 25 24 23 35 35 H 1.07993 * 120.00036 * 179.83574 * 26 25 24 36 36 H 1.08001 * 119.99271 * 179.97438 * 27 26 25 37 37 H 1.08001 * 119.99376 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0747 -1.1998 0.1453 9 6 1.2646 -2.4913 -0.2011 10 1 1.9536 -3.3263 -0.0731 11 8 0.2103 -2.5925 0.7583 12 6 0.5517 -2.9990 2.0102 13 6 1.8656 -3.1718 2.3166 14 6 2.2274 -3.5943 3.6145 15 6 3.4242 -3.8628 4.2518 16 7 3.1468 -4.2353 5.5098 17 1 3.8073 -4.4812 6.1763 18 7 1.7630 -4.2166 5.7187 19 6 1.1659 -3.8352 4.6036 20 6 -0.1771 -3.6342 4.2177 21 6 -0.4590 -3.2279 2.9544 22 17 -2.1155 -2.9858 2.4946 23 6 0.6839 -2.5277 -1.5913 24 6 -0.5967 -2.0591 -1.8179 25 6 -1.1277 -2.0888 -3.0938 26 6 -0.3814 -2.5948 -4.1416 27 6 0.8973 -3.0683 -3.9140 28 6 1.4298 -3.0350 -2.6387 29 1 -0.4850 0.8401 -0.0004 30 1 2.6264 -2.9881 1.5725 31 1 4.4086 -3.7858 3.8142 32 1 -0.9762 -3.8049 4.9239 33 1 -1.1812 -1.6672 -0.9987 34 1 -2.1268 -1.7192 -3.2717 35 1 -0.7973 -2.6205 -5.1379 36 1 1.4802 -3.4640 -4.7325 37 1 2.4289 -3.4046 -2.4610 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227784559.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:56 Heat of formation + Delta-G solvation = 85.827206 kcal Electronic energy + Delta-G solvation = -25014.230047 eV Core-core repulsion = 21363.734476 eV Total energy + Delta-G solvation = -3650.495570 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.88236 -38.86146 -37.80363 -36.17742 -35.01956 -32.89008 -31.40430 -30.76576 -29.98926 -29.82687 -27.63444 -27.02831 -24.07379 -22.93475 -21.67744 -21.10886 -20.72885 -19.84375 -17.94533 -17.46125 -16.51204 -16.05992 -15.83991 -14.98938 -14.74025 -14.61047 -14.09501 -13.94639 -13.64135 -13.57492 -13.20155 -12.96014 -12.55617 -12.37384 -12.26609 -11.79250 -11.66580 -11.48078 -11.05178 -11.01459 -10.65382 -10.53054 -10.41618 -10.32112 -10.09894 -9.99224 -9.78607 -9.40358 -9.11850 -8.66494 -8.03430 -7.93099 -7.60655 -6.68205 -6.13250 -4.34076 0.88897 2.27695 2.32900 2.43993 2.58513 2.78032 3.04109 3.21464 3.30789 3.31974 4.25708 4.29063 4.37980 4.70675 4.84415 4.97950 5.15858 5.44246 5.64095 5.68977 5.71127 5.82295 5.95048 6.08131 6.22256 6.31085 6.38300 6.43976 6.57390 6.68992 6.81230 6.90840 6.96053 7.10742 7.23947 7.31930 7.37973 7.55368 7.69144 7.80558 7.83823 7.88402 8.07483 8.49271 8.87684 9.38777 10.82729 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.011635 B = 0.004890 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.038814 B = 5724.195776 C = 6334.220517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.090 3.910 3 Si 0.886 3.114 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.556 4.556 8 H 0.067 0.933 9 C 0.241 3.759 10 H 0.033 0.967 11 O -0.274 6.274 12 C 0.145 3.855 13 C -0.160 4.160 14 C -0.153 4.153 15 C 0.049 3.951 16 N -0.433 5.433 17 H 0.438 0.562 18 N -0.307 5.307 19 C 0.082 3.918 20 C -0.090 4.090 21 C 0.015 3.985 22 Cl -0.055 7.055 23 C -0.033 4.033 24 C -0.066 4.066 25 C -0.141 4.141 26 C -0.147 4.147 27 C -0.139 4.139 28 C -0.126 4.126 29 H 0.263 0.737 30 H 0.146 0.854 31 H 0.183 0.817 32 H 0.137 0.863 33 H 0.150 0.850 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.864 -7.039 3.481 8.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.120 4.120 3 Si 0.714 3.286 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.209 1.209 7 C -0.592 4.592 8 H 0.085 0.915 9 C 0.187 3.813 10 H 0.051 0.949 11 O -0.186 6.186 12 C 0.095 3.905 13 C -0.181 4.181 14 C -0.162 4.162 15 C -0.106 4.106 16 N -0.136 5.136 17 H 0.281 0.719 18 N -0.137 5.137 19 C -0.071 4.071 20 C -0.112 4.112 21 C -0.017 4.017 22 Cl -0.026 7.026 23 C -0.033 4.033 24 C -0.084 4.084 25 C -0.160 4.160 26 C -0.165 4.165 27 C -0.157 4.157 28 C -0.144 4.144 29 H 0.074 0.926 30 H 0.163 0.837 31 H 0.200 0.800 32 H 0.155 0.845 33 H 0.167 0.833 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.141 -7.204 4.548 8.784 hybrid contribution 1.205 1.399 -0.633 1.951 sum 3.345 -5.805 3.915 7.760 Atomic orbital electron populations 1.69994 1.05748 1.26666 1.43999 1.24931 0.94734 0.99051 0.93251 0.86630 0.80428 0.83828 0.77759 1.19626 1.20738 1.20862 1.21277 0.94223 0.90377 1.53305 0.91538 1.18932 0.84238 0.95892 0.82212 0.94919 1.86300 1.38344 1.78678 1.15267 1.17867 0.90569 0.94572 0.87498 1.20244 0.95548 1.07105 0.95231 1.19474 0.91290 1.09443 0.96029 1.22470 0.99407 1.02654 0.86077 1.46116 1.07006 1.49917 1.10557 0.71850 1.77513 0.86071 1.29440 1.20725 1.20526 0.94304 1.00609 0.91623 1.19355 0.93037 1.04493 0.94327 1.19947 0.85535 1.02819 0.93399 1.98356 1.16385 1.95116 1.92747 1.19897 0.93550 0.94624 0.95237 1.21469 0.95566 0.94614 0.96753 1.21138 0.99411 1.01521 0.93887 1.20849 0.95353 1.02261 0.98063 1.20773 0.95933 1.02708 0.96324 1.20735 0.99316 1.01599 0.92739 0.92644 0.83671 0.79998 0.84519 0.83271 0.87687 0.87923 0.87632 0.87329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.37 9.62 55.43 0.53 -20.83 16 2 C 0.09 2.26 5.22 -17.82 -0.09 2.17 16 3 Si 0.89 20.12 29.55 -169.99 -5.02 15.10 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.56 -13.61 7.42 -34.44 -0.26 -13.87 16 8 H 0.07 1.61 7.82 -52.49 -0.41 1.20 16 9 C 0.24 5.49 2.10 -29.03 -0.06 5.43 16 10 H 0.03 0.70 6.53 -51.92 -0.34 0.37 16 11 O -0.27 -6.32 6.99 -19.70 -0.14 -6.46 16 12 C 0.14 3.07 6.52 -39.64 -0.26 2.81 16 13 C -0.16 -3.12 8.61 -39.25 -0.34 -3.46 16 14 C -0.15 -2.66 6.33 -105.19 -0.67 -3.32 16 15 C 0.05 0.63 12.08 -16.56 -0.20 0.43 16 16 N -0.43 -5.30 7.19 30.86 0.22 -5.08 16 17 H 0.44 3.38 8.96 -182.71 -1.64 1.75 16 18 N -0.31 -5.00 12.70 33.26 0.42 -4.57 16 19 C 0.08 1.47 7.49 -83.04 -0.62 0.85 16 20 C -0.09 -1.58 9.80 -39.39 -0.39 -1.97 16 21 C 0.01 0.28 6.27 -39.77 -0.25 0.03 16 22 Cl -0.06 -1.01 28.35 -51.86 -1.47 -2.48 16 23 C -0.03 -0.72 4.82 -104.62 -0.50 -1.23 16 24 C -0.07 -1.47 8.09 -39.59 -0.32 -1.79 16 25 C -0.14 -2.77 10.05 -39.58 -0.40 -3.17 16 26 C -0.15 -2.64 10.05 -39.58 -0.40 -3.04 16 27 C -0.14 -2.50 10.05 -39.58 -0.40 -2.90 16 28 C -0.13 -2.49 9.71 -39.58 -0.38 -2.87 16 29 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 30 H 0.15 2.85 5.40 -52.49 -0.28 2.56 16 31 H 0.18 1.64 8.06 -52.49 -0.42 1.21 16 32 H 0.14 2.08 8.06 -52.49 -0.42 1.65 16 33 H 0.15 3.63 6.04 -52.49 -0.32 3.31 16 34 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 35 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 37 H 0.11 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 331.72 15.07 5.00 5.00 Total: -1.00 -28.90 331.72 -10.64 -39.55 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -4.66 Total: 5.67 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: -5.53 Total: -25.88 kcal Atomic # 7 Polarization: -31.66 SS G_CDS: 1.18 Total: -30.49 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.14 Total: -6.46 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.47 Total: -2.48 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.90 -10.64 -39.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227784559.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.373 kcal (2) G-P(sol) polarization free energy of solvation -28.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds