Wall clock time and date at job start Tue Mar 31 2020 15:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00035 * 2 1 4 4 H 1.48504 * 109.46706 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47290 * 299.99369 * 3 2 1 6 6 H 1.48501 * 109.47406 * 60.00030 * 3 2 1 7 7 C 1.37875 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00378 * 188.90556 * 7 2 1 9 9 C 1.50700 * 119.99950 * 8.91242 * 7 2 1 10 10 H 1.09008 * 109.46991 * 185.48680 * 9 7 2 11 11 O 1.42902 * 109.47264 * 305.48571 * 9 7 2 12 12 C 1.35988 * 116.99970 * 279.62413 * 11 9 7 13 13 C 1.36024 * 119.20231 * 5.67385 * 12 11 9 14 14 C 1.41201 * 119.51041 * 180.02562 * 13 12 11 15 15 C 1.38224 * 134.72981 * 179.97438 * 14 13 12 16 16 N 1.34106 * 107.89914 * 180.02562 * 15 14 13 17 17 H 0.96996 * 125.03353 * 179.97438 * 16 15 14 18 18 N 1.39956 * 109.92865 * 359.97438 * 16 15 14 19 19 C 1.32119 * 108.95217 * 359.97438 * 18 16 15 20 20 C 1.41172 * 134.57224 * 180.02562 * 19 18 16 21 21 C 1.35660 * 119.66094 * 180.08810 * 20 19 18 22 22 Cl 1.73609 * 119.12081 * 179.97438 * 21 20 19 23 23 C 1.50704 * 109.47551 * 65.48598 * 9 7 2 24 24 C 1.38232 * 120.00016 * 268.72141 * 23 9 7 25 25 C 1.38232 * 119.99515 * 179.80750 * 24 23 9 26 26 C 1.38240 * 120.00406 * 0.39564 * 25 24 23 27 27 C 1.38239 * 119.99629 * 359.85668 * 26 25 24 28 28 C 1.38233 * 119.99881 * 359.95758 * 27 26 25 29 29 H 0.96999 * 119.99786 * 0.02562 * 1 2 3 30 30 H 1.07994 * 120.24253 * 359.97438 * 13 12 11 31 31 H 1.08001 * 126.05057 * 0.05894 * 15 14 13 32 32 H 1.07996 * 120.17083 * 359.97100 * 20 19 18 33 33 H 1.07997 * 119.99980 * 359.97438 * 24 23 9 34 34 H 1.08002 * 120.00022 * 180.23357 * 25 24 23 35 35 H 1.07993 * 120.00036 * 179.83574 * 26 25 24 36 36 H 1.08001 * 119.99271 * 179.97438 * 27 26 25 37 37 H 1.08001 * 119.99376 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0747 -1.1998 0.1453 9 6 1.2646 -2.4913 -0.2011 10 1 1.9536 -3.3263 -0.0731 11 8 0.2103 -2.5925 0.7583 12 6 0.5517 -2.9990 2.0102 13 6 1.8656 -3.1718 2.3166 14 6 2.2274 -3.5943 3.6145 15 6 3.4242 -3.8628 4.2518 16 7 3.1468 -4.2353 5.5098 17 1 3.8073 -4.4812 6.1763 18 7 1.7630 -4.2166 5.7187 19 6 1.1659 -3.8352 4.6036 20 6 -0.1771 -3.6342 4.2177 21 6 -0.4590 -3.2279 2.9544 22 17 -2.1155 -2.9858 2.4946 23 6 0.6839 -2.5277 -1.5913 24 6 -0.5967 -2.0591 -1.8179 25 6 -1.1277 -2.0888 -3.0938 26 6 -0.3814 -2.5948 -4.1416 27 6 0.8973 -3.0683 -3.9140 28 6 1.4298 -3.0350 -2.6387 29 1 -0.4850 0.8401 -0.0004 30 1 2.6264 -2.9881 1.5725 31 1 4.4086 -3.7858 3.8142 32 1 -0.9762 -3.8049 4.9239 33 1 -1.1812 -1.6672 -0.9987 34 1 -2.1268 -1.7192 -3.2717 35 1 -0.7973 -2.6205 -5.1379 36 1 1.4802 -3.4640 -4.7325 37 1 2.4289 -3.4046 -2.4610 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227784559.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:55 Heat of formation + Delta-G solvation = 71.114502 kcal Electronic energy + Delta-G solvation = -25014.868037 eV Core-core repulsion = 21363.734476 eV Total energy + Delta-G solvation = -3651.133561 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.13538 -40.39363 -39.27085 -37.63812 -36.43068 -34.65008 -32.75395 -32.34556 -31.39057 -31.24953 -28.99100 -28.71890 -25.60268 -24.47782 -23.16894 -22.51464 -22.10981 -21.28905 -19.13270 -19.11102 -17.89963 -17.63727 -17.32183 -16.76058 -16.16944 -15.91551 -15.59733 -15.42413 -15.25198 -14.96238 -14.63630 -14.34015 -14.09320 -13.87548 -13.71670 -13.36165 -13.15693 -13.07583 -12.84642 -12.59897 -12.35204 -12.07327 -11.84285 -11.75881 -11.60459 -11.39703 -11.24628 -11.01322 -10.71006 -10.46841 -9.47217 -9.37238 -9.18098 -8.14771 -7.93526 -6.23787 -0.40478 0.79876 0.90650 0.92728 1.20612 1.39506 1.44396 1.48554 1.51068 1.98812 2.42905 2.80974 2.87750 3.27251 3.32371 3.45781 3.82196 4.15500 4.31757 4.34556 4.38187 4.52981 4.57133 4.62404 4.72186 4.82077 4.95362 5.03897 5.08689 5.15293 5.38835 5.46090 5.51283 5.59218 5.70476 5.81278 5.87896 6.02068 6.07255 6.27781 6.36041 6.50075 6.59622 6.68714 7.21199 7.51751 8.94390 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.011635 B = 0.004890 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.038814 B = 5724.195776 C = 6334.220517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.051 3.949 3 Si 0.933 3.067 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.289 1.289 7 C -0.560 4.560 8 H 0.063 0.937 9 C 0.242 3.758 10 H 0.035 0.965 11 O -0.292 6.292 12 C 0.103 3.897 13 C -0.149 4.149 14 C -0.194 4.194 15 C 0.091 3.909 16 N -0.406 5.406 17 H 0.461 0.539 18 N -0.327 5.327 19 C 0.065 3.935 20 C -0.084 4.084 21 C -0.004 4.004 22 Cl -0.059 7.059 23 C -0.059 4.059 24 C -0.088 4.088 25 C -0.151 4.151 26 C -0.142 4.142 27 C -0.134 4.134 28 C -0.136 4.136 29 H 0.257 0.743 30 H 0.139 0.861 31 H 0.232 0.768 32 H 0.154 0.846 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.140 0.860 36 H 0.144 0.856 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.130 -7.969 3.238 10.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.156 4.156 3 Si 0.760 3.240 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.215 1.215 7 C -0.597 4.597 8 H 0.081 0.919 9 C 0.188 3.812 10 H 0.052 0.948 11 O -0.204 6.204 12 C 0.054 3.946 13 C -0.171 4.171 14 C -0.203 4.203 15 C -0.066 4.066 16 N -0.111 5.111 17 H 0.310 0.690 18 N -0.158 5.158 19 C -0.087 4.087 20 C -0.106 4.106 21 C -0.035 4.035 22 Cl -0.030 7.030 23 C -0.060 4.060 24 C -0.107 4.107 25 C -0.169 4.169 26 C -0.160 4.160 27 C -0.152 4.152 28 C -0.154 4.154 29 H 0.067 0.933 30 H 0.157 0.843 31 H 0.248 0.752 32 H 0.172 0.828 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.157 0.843 36 H 0.161 0.839 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.421 -8.156 4.351 10.247 hybrid contribution 0.662 1.561 -0.456 1.756 sum 5.082 -6.595 3.895 9.192 Atomic orbital electron populations 1.70149 1.06483 1.26376 1.45305 1.25472 0.95302 1.01173 0.93644 0.85908 0.79847 0.81255 0.77014 1.18886 1.21165 1.21540 1.21458 0.94076 0.91355 1.52777 0.91896 1.18870 0.84415 0.95050 0.82859 0.94756 1.86257 1.38231 1.79837 1.16103 1.18210 0.91889 0.97050 0.87421 1.20250 0.94782 1.05974 0.96091 1.19716 0.93164 1.11889 0.95559 1.23161 0.99941 0.98209 0.85328 1.46211 1.06379 1.47493 1.10991 0.69030 1.77483 0.87795 1.30274 1.20241 1.20656 0.94548 1.01209 0.92290 1.19544 0.93986 1.03231 0.93840 1.19981 0.85218 1.04434 0.93893 1.98336 1.16472 1.95302 1.92911 1.20035 0.94132 0.96179 0.95607 1.21281 0.95908 0.96248 0.97215 1.21368 1.00449 1.01659 0.93416 1.21263 0.95141 1.00473 0.99079 1.21217 0.96148 1.01323 0.96469 1.21010 0.99880 1.01448 0.93084 0.93347 0.84314 0.75151 0.82803 0.86309 0.86180 0.84262 0.83869 0.85890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -45.56 9.62 21.45 0.21 -45.35 16 2 C 0.05 2.62 5.22 84.65 0.44 3.06 16 3 Si 0.93 41.95 29.55 68.60 2.03 43.97 16 4 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 7 C -0.56 -28.07 7.42 25.60 0.19 -27.88 16 8 H 0.06 3.09 7.82 -2.91 -0.02 3.07 16 9 C 0.24 11.42 2.10 29.10 0.06 11.48 16 10 H 0.03 1.54 6.53 -2.38 -0.02 1.52 16 11 O -0.29 -14.15 6.99 -93.42 -0.65 -14.80 16 12 C 0.10 4.55 6.52 22.23 0.14 4.69 16 13 C -0.15 -5.92 8.61 22.48 0.19 -5.72 16 14 C -0.19 -6.49 6.33 -20.23 -0.13 -6.61 16 15 C 0.09 2.03 12.08 84.34 1.02 3.05 16 16 N -0.41 -8.41 7.19 -56.29 -0.40 -8.82 16 17 H 0.46 5.04 8.96 -213.42 -1.91 3.12 16 18 N -0.33 -9.94 12.70 -48.70 -0.62 -10.56 16 19 C 0.06 2.26 7.49 42.14 0.32 2.57 16 20 C -0.08 -3.00 9.80 22.39 0.22 -2.78 16 21 C 0.00 -0.16 6.27 22.15 0.14 -0.02 16 22 Cl -0.06 -2.29 28.35 -2.72 -0.08 -2.36 16 23 C -0.06 -2.68 4.82 -19.87 -0.10 -2.78 16 24 C -0.09 -4.06 8.09 22.27 0.18 -3.88 16 25 C -0.15 -5.87 10.05 22.27 0.22 -5.64 16 26 C -0.14 -4.73 10.05 22.27 0.22 -4.50 16 27 C -0.13 -4.44 10.05 22.27 0.22 -4.22 16 28 C -0.14 -5.27 9.71 22.27 0.22 -5.06 16 29 H 0.26 13.50 8.31 -92.71 -0.77 12.73 16 30 H 0.14 5.53 5.40 -2.91 -0.02 5.51 16 31 H 0.23 2.82 8.06 -2.91 -0.02 2.80 16 32 H 0.15 4.72 8.06 -2.91 -0.02 4.69 16 33 H 0.12 6.17 6.04 -2.91 -0.02 6.15 16 34 H 0.12 4.15 8.06 -2.91 -0.02 4.13 16 35 H 0.14 3.61 8.06 -2.91 -0.02 3.58 16 36 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 37 H 0.12 4.27 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -65.63 331.72 3.27 -62.35 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -0.78 Total: 19.79 kcal Atomic # 6 Polarization: -47.80 SS G_CDS: 3.57 Total: -44.23 kcal Atomic # 7 Polarization: -63.91 SS G_CDS: -0.82 Total: -64.73 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.65 Total: -14.80 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Atomic # 17 Polarization: -2.29 SS G_CDS: -0.08 Total: -2.36 kcal Total: -65.63 3.27 -62.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227784559.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.468 kcal (2) G-P(sol) polarization free energy of solvation -65.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds