Wall clock time and date at job start Tue Mar 31 2020 15:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99812 * 2 1 4 4 H 1.48499 * 109.46971 * 90.00069 * 3 2 1 5 5 H 1.48504 * 109.46859 * 209.99438 * 3 2 1 6 6 H 1.48491 * 109.47564 * 329.99652 * 3 2 1 7 7 C 1.37874 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00000 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00074 * 180.02562 * 7 2 1 10 10 H 1.08998 * 109.46915 * 299.99640 * 9 7 2 11 11 C 1.53000 * 109.47278 * 59.99829 * 9 7 2 12 12 Cl 1.80301 * 109.47037 * 185.00264 * 11 9 7 13 13 O 1.42903 * 109.47335 * 179.97438 * 9 7 2 14 14 C 1.35767 * 117.00224 * 141.96279 * 13 9 7 15 15 C 1.36313 * 120.27105 * 5.69637 * 14 13 9 16 16 C 1.39352 * 121.64026 * 179.97438 * 15 14 13 17 17 C 1.35865 * 121.81645 * 359.97438 * 16 15 14 18 18 C 1.41022 * 119.72316 * 0.02562 * 17 16 15 19 19 N 1.32943 * 121.09029 * 179.97438 * 18 17 16 20 20 C 1.32882 * 119.52283 * 180.02562 * 19 18 17 21 21 C 1.41153 * 121.09967 * 180.02562 * 20 19 18 22 22 C 1.35727 * 119.59144 * 179.97438 * 21 20 19 23 23 C 1.39588 * 121.72620 * 0.04261 * 22 21 20 24 24 C 1.35733 * 121.71584 * 359.95713 * 23 22 21 25 25 C 1.41164 * 119.58272 * 0.02562 * 24 23 22 26 26 N 1.32861 * 121.06905 * 179.97438 * 25 24 23 27 27 C 1.32704 * 119.56800 * 179.68719 * 26 25 24 28 28 H 0.97000 * 120.00260 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46760 * 305.00116 * 11 9 7 30 30 H 1.09002 * 109.47065 * 65.00410 * 11 9 7 31 31 H 1.07992 * 119.18000 * 359.97438 * 15 14 13 32 32 H 1.07998 * 119.08661 * 180.02562 * 16 15 14 33 33 H 1.08003 * 120.13195 * 180.02562 * 17 16 15 34 34 H 1.08002 * 120.20176 * 359.97438 * 21 20 19 35 35 H 1.08003 * 119.13998 * 180.02562 * 22 21 20 36 36 H 1.08003 * 119.14772 * 179.97438 * 23 22 21 37 37 H 1.07993 * 120.21322 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4401 -0.6999 6 1 1.4467 2.6526 -0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8751 -0.6805 -0.8889 11 6 4.0211 -0.4725 1.2504 12 17 5.8180 -0.3432 1.1787 13 8 3.9878 -2.5414 0.0022 14 6 5.0918 -2.8055 -0.7426 15 6 5.7656 -1.7916 -1.3559 16 6 6.9020 -2.0300 -2.1264 17 6 7.3963 -3.2829 -2.3051 18 6 6.7514 -4.3818 -1.7007 19 7 7.2113 -5.6191 -1.8579 20 6 6.5789 -6.6318 -1.2745 21 6 7.0385 -7.9586 -1.4188 22 6 6.3693 -8.9698 -0.8090 23 6 5.2298 -8.7356 -0.0375 24 6 4.7344 -7.4848 0.1423 25 6 5.3810 -6.3855 -0.4630 26 7 4.9212 -5.1488 -0.3072 27 6 5.5561 -4.1365 -0.8846 28 1 -0.4850 0.8400 -0.0004 29 1 3.5864 0.5260 1.2958 30 1 3.7324 -1.0353 2.1381 31 1 5.4099 -0.7783 -1.2419 32 1 7.4041 -1.1958 -2.5936 33 1 8.2794 -3.4365 -2.9076 34 1 7.9173 -8.1679 -2.0107 35 1 6.7275 -9.9822 -0.9239 36 1 4.7293 -9.5714 0.4288 37 1 3.8513 -7.3314 0.7445 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228519823.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:38 Heat of formation + Delta-G solvation = 56.151353 kcal Electronic energy + Delta-G solvation = -24665.136479 eV Core-core repulsion = 21013.354067 eV Total energy + Delta-G solvation = -3651.782412 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.17006 -39.38304 -37.65229 -35.67122 -35.44492 -34.86994 -33.41282 -31.27383 -30.55526 -30.02284 -28.86642 -25.75470 -25.31948 -24.22839 -22.45582 -22.01151 -21.05212 -19.57333 -18.65359 -17.52167 -16.87510 -16.42353 -16.07671 -15.51174 -15.34639 -15.13768 -14.72208 -14.39170 -14.21086 -14.01707 -13.52981 -13.35914 -13.03254 -12.59369 -12.42085 -12.16551 -12.06683 -11.96748 -11.68306 -11.53235 -11.47010 -11.26288 -11.09212 -10.87602 -10.76975 -10.18863 -9.95141 -9.70313 -9.44349 -9.00826 -8.98041 -8.75923 -8.50802 -7.31407 -6.49904 -4.55552 -0.22299 0.39753 1.43171 2.39900 2.44870 2.77616 2.93088 3.03984 3.10439 3.46139 3.50303 3.96771 3.99355 4.11514 4.15050 4.25468 4.69200 4.74789 4.78128 4.99455 5.04168 5.09604 5.26537 5.35754 5.48806 5.55307 5.70476 5.73433 5.78733 5.88313 5.97000 6.05237 6.23515 6.25827 6.28363 6.49801 6.56465 6.57588 6.81418 7.03848 7.38326 7.67005 7.87022 8.19753 8.63280 9.02647 10.61356 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016903 B = 0.003939 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.131228 B = 7106.902619 C = 7996.552951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.084 3.916 3 Si 0.860 3.140 4 H -0.267 1.267 5 H -0.256 1.256 6 H -0.279 1.279 7 C -0.527 4.527 8 H 0.096 0.904 9 C 0.179 3.821 10 H 0.053 0.947 11 C -0.054 4.054 12 Cl -0.220 7.220 13 O -0.267 6.267 14 C 0.200 3.800 15 C -0.226 4.226 16 C -0.027 4.027 17 C -0.161 4.161 18 C 0.147 3.853 19 N -0.432 5.432 20 C 0.115 3.885 21 C -0.097 4.097 22 C -0.090 4.090 23 C -0.116 4.116 24 C -0.067 4.067 25 C 0.076 3.924 26 N -0.371 5.371 27 C 0.088 3.912 28 H 0.274 0.726 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.147 0.853 32 H 0.132 0.868 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.051 -10.079 -1.984 16.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.122 4.122 3 Si 0.688 3.312 4 H -0.194 1.194 5 H -0.180 1.180 6 H -0.205 1.205 7 C -0.565 4.565 8 H 0.114 0.886 9 C 0.123 3.877 10 H 0.071 0.929 11 C -0.116 4.116 12 Cl -0.194 7.194 13 O -0.177 6.177 14 C 0.149 3.851 15 C -0.247 4.247 16 C -0.048 4.048 17 C -0.181 4.181 18 C 0.010 3.990 19 N -0.147 5.147 20 C -0.023 4.023 21 C -0.116 4.116 22 C -0.111 4.111 23 C -0.137 4.137 24 C -0.086 4.086 25 C -0.062 4.062 26 N -0.085 5.085 27 C -0.052 4.052 28 H 0.085 0.915 29 H 0.109 0.891 30 H 0.121 0.879 31 H 0.165 0.835 32 H 0.150 0.850 33 H 0.155 0.845 34 H 0.156 0.844 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 12.820 -10.055 -1.849 16.397 hybrid contribution 0.365 1.289 0.125 1.346 sum 13.185 -8.766 -1.723 15.926 Atomic orbital electron populations 1.69804 1.05999 1.27876 1.46958 1.24818 0.94938 0.98489 0.93956 0.87239 0.80792 0.84145 0.79069 1.19359 1.18050 1.20498 1.20770 0.85976 0.96252 1.53474 0.88573 1.21041 0.96055 0.77397 0.93175 0.92947 1.26259 0.76915 1.03544 1.04873 1.98670 1.22793 1.98941 1.98960 1.86253 1.37809 1.32537 1.61096 1.18555 0.87093 0.90221 0.89247 1.21131 0.99204 1.00331 1.04064 1.20645 0.93660 0.96693 0.93834 1.20481 1.02527 0.90285 1.04785 1.20511 0.91883 0.92158 0.94415 1.68871 1.28489 0.98154 1.19218 1.20844 0.92651 0.94177 0.94621 1.20790 1.00710 0.89458 1.00685 1.20905 0.94913 0.99394 0.95893 1.20857 0.96653 0.96996 0.99188 1.20939 0.99401 0.90416 0.97849 1.20813 0.94641 0.92207 0.98589 1.68750 1.26491 0.98167 1.15092 1.20245 0.94620 0.91742 0.98586 0.91527 0.89136 0.87852 0.83525 0.84999 0.84504 0.84403 0.85043 0.84953 0.84021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.40 13.96 55.43 0.77 -23.63 16 2 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 3 Si 0.86 18.92 24.41 -169.99 -4.15 14.77 16 4 H -0.27 -5.64 6.83 56.52 0.39 -5.26 16 5 H -0.26 -5.28 6.53 56.52 0.37 -4.91 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 7 C -0.53 -13.90 9.47 -34.44 -0.33 -14.23 16 8 H 0.10 2.83 8.06 -52.48 -0.42 2.41 16 9 C 0.18 4.03 1.74 -27.88 -0.05 3.98 16 10 H 0.05 1.16 4.57 -51.93 -0.24 0.92 16 11 C -0.05 -1.09 5.83 37.16 0.22 -0.88 16 12 Cl -0.22 -4.01 25.64 -51.86 -1.33 -5.34 16 13 O -0.27 -6.03 9.49 -19.01 -0.18 -6.22 16 14 C 0.20 4.00 6.26 -38.96 -0.24 3.76 16 15 C -0.23 -3.94 7.12 -39.86 -0.28 -4.22 16 16 C -0.03 -0.39 9.89 -40.02 -0.40 -0.78 16 17 C -0.16 -2.35 9.99 -39.38 -0.39 -2.75 16 18 C 0.15 2.56 6.73 -82.87 -0.56 2.00 16 19 N -0.43 -7.18 10.42 -6.26 -0.07 -7.24 16 20 C 0.12 1.79 6.73 -82.86 -0.56 1.23 16 21 C -0.10 -1.11 10.00 -39.37 -0.39 -1.51 16 22 C -0.09 -0.82 9.90 -39.98 -0.40 -1.21 16 23 C -0.12 -1.12 9.90 -39.97 -0.40 -1.52 16 24 C -0.07 -0.87 10.00 -39.37 -0.39 -1.26 16 25 C 0.08 1.26 6.73 -82.86 -0.56 0.70 16 26 N -0.37 -7.30 10.21 -6.14 -0.06 -7.36 16 27 C 0.09 1.73 6.75 -82.71 -0.56 1.17 16 28 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.09 1.86 3.21 -51.93 -0.17 1.70 16 30 H 0.10 2.06 8.14 -51.93 -0.42 1.64 16 31 H 0.15 2.60 4.67 -52.49 -0.25 2.35 16 32 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.14 1.65 8.06 -52.48 -0.42 1.23 16 34 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 36 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 37 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 322.40 15.07 4.86 4.86 Total: -1.00 -29.79 322.40 -8.75 -38.55 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -3.22 Total: 5.03 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -5.38 Total: -13.42 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.65 Total: -38.23 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -0.18 Total: -6.22 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -4.15 Total: 14.77 kcal Atomic # 17 Polarization: -4.01 SS G_CDS: -1.33 Total: -5.34 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.79 -8.75 -38.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228519823.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.698 kcal (2) G-P(sol) polarization free energy of solvation -29.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds