Wall clock time and date at job start Tue Mar 31 2020 15:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99812 * 2 1 4 4 H 1.48499 * 109.46971 * 90.00069 * 3 2 1 5 5 H 1.48504 * 109.46859 * 209.99438 * 3 2 1 6 6 H 1.48491 * 109.47564 * 329.99652 * 3 2 1 7 7 C 1.37874 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00000 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00074 * 180.02562 * 7 2 1 10 10 H 1.08998 * 109.46915 * 299.99640 * 9 7 2 11 11 C 1.53000 * 109.47278 * 59.99829 * 9 7 2 12 12 Cl 1.80301 * 109.47037 * 185.00264 * 11 9 7 13 13 O 1.42903 * 109.47335 * 179.97438 * 9 7 2 14 14 C 1.35767 * 117.00224 * 141.96279 * 13 9 7 15 15 C 1.36313 * 120.27105 * 5.69637 * 14 13 9 16 16 C 1.39352 * 121.64026 * 179.97438 * 15 14 13 17 17 C 1.35865 * 121.81645 * 359.97438 * 16 15 14 18 18 C 1.41022 * 119.72316 * 0.02562 * 17 16 15 19 19 N 1.32943 * 121.09029 * 179.97438 * 18 17 16 20 20 C 1.32882 * 119.52283 * 180.02562 * 19 18 17 21 21 C 1.41153 * 121.09967 * 180.02562 * 20 19 18 22 22 C 1.35727 * 119.59144 * 179.97438 * 21 20 19 23 23 C 1.39588 * 121.72620 * 0.04261 * 22 21 20 24 24 C 1.35733 * 121.71584 * 359.95713 * 23 22 21 25 25 C 1.41164 * 119.58272 * 0.02562 * 24 23 22 26 26 N 1.32861 * 121.06905 * 179.97438 * 25 24 23 27 27 C 1.32704 * 119.56800 * 179.68719 * 26 25 24 28 28 H 0.97000 * 120.00260 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46760 * 305.00116 * 11 9 7 30 30 H 1.09002 * 109.47065 * 65.00410 * 11 9 7 31 31 H 1.07992 * 119.18000 * 359.97438 * 15 14 13 32 32 H 1.07998 * 119.08661 * 180.02562 * 16 15 14 33 33 H 1.08003 * 120.13195 * 180.02562 * 17 16 15 34 34 H 1.08002 * 120.20176 * 359.97438 * 21 20 19 35 35 H 1.08003 * 119.13998 * 180.02562 * 22 21 20 36 36 H 1.08003 * 119.14772 * 179.97438 * 23 22 21 37 37 H 1.07993 * 120.21322 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4401 -0.6999 6 1 1.4467 2.6526 -0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8751 -0.6805 -0.8889 11 6 4.0211 -0.4725 1.2504 12 17 5.8180 -0.3432 1.1787 13 8 3.9878 -2.5414 0.0022 14 6 5.0918 -2.8055 -0.7426 15 6 5.7656 -1.7916 -1.3559 16 6 6.9020 -2.0300 -2.1264 17 6 7.3963 -3.2829 -2.3051 18 6 6.7514 -4.3818 -1.7007 19 7 7.2113 -5.6191 -1.8579 20 6 6.5789 -6.6318 -1.2745 21 6 7.0385 -7.9586 -1.4188 22 6 6.3693 -8.9698 -0.8090 23 6 5.2298 -8.7356 -0.0375 24 6 4.7344 -7.4848 0.1423 25 6 5.3810 -6.3855 -0.4630 26 7 4.9212 -5.1488 -0.3072 27 6 5.5561 -4.1365 -0.8846 28 1 -0.4850 0.8400 -0.0004 29 1 3.5864 0.5260 1.2958 30 1 3.7324 -1.0353 2.1381 31 1 5.4099 -0.7783 -1.2419 32 1 7.4041 -1.1958 -2.5936 33 1 8.2794 -3.4365 -2.9076 34 1 7.9173 -8.1679 -2.0107 35 1 6.7275 -9.9822 -0.9239 36 1 4.7293 -9.5714 0.4288 37 1 3.8513 -7.3314 0.7445 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228519823.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:38 Heat of formation + Delta-G solvation = 36.662767 kcal Electronic energy + Delta-G solvation = -24665.981568 eV Core-core repulsion = 21013.354067 eV Total energy + Delta-G solvation = -3652.627501 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.37409 -40.76607 -38.85405 -36.99878 -36.79668 -36.15933 -35.27543 -32.77328 -31.85591 -31.20317 -30.10520 -27.22837 -26.90760 -25.40453 -23.99300 -23.06253 -22.38756 -20.79900 -19.97276 -19.15651 -18.34045 -17.82659 -17.34113 -17.00229 -16.68588 -16.24511 -15.97979 -15.74840 -15.42685 -15.12818 -15.03259 -14.96459 -14.68420 -14.03202 -13.65147 -13.34828 -13.29192 -13.18663 -13.10486 -12.85346 -12.70367 -12.55806 -12.54533 -12.40690 -12.07078 -11.86355 -11.61244 -11.25600 -11.18812 -10.87690 -10.21893 -9.89804 -9.64800 -8.59734 -8.52370 -6.65734 -1.36202 -0.76206 0.32245 1.14174 1.20415 1.23183 1.27481 1.33798 1.37769 2.05859 2.11282 2.39272 2.78252 2.87916 2.95870 2.98949 3.06052 3.53003 3.75936 3.82012 3.89973 4.00583 4.02135 4.02485 4.20348 4.28947 4.30503 4.46682 4.70071 4.76885 4.85771 4.94943 5.04584 5.12733 5.17438 5.24050 5.35981 5.36971 5.53776 5.74967 5.89117 6.18589 6.38532 6.49741 6.68397 6.98412 8.63550 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016903 B = 0.003939 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.131228 B = 7106.902619 C = 7996.552951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.035 3.965 3 Si 0.921 3.079 4 H -0.247 1.247 5 H -0.231 1.231 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.041 0.959 9 C 0.187 3.813 10 H 0.060 0.940 11 C -0.049 4.049 12 Cl -0.193 7.193 13 O -0.299 6.299 14 C 0.156 3.844 15 C -0.214 4.214 16 C -0.031 4.031 17 C -0.142 4.142 18 C 0.122 3.878 19 N -0.433 5.433 20 C 0.098 3.902 21 C -0.106 4.106 22 C -0.067 4.067 23 C -0.081 4.081 24 C -0.105 4.105 25 C 0.062 3.938 26 N -0.422 5.422 27 C 0.058 3.942 28 H 0.279 0.721 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.144 0.856 32 H 0.176 0.824 33 H 0.169 0.831 34 H 0.162 0.838 35 H 0.184 0.816 36 H 0.176 0.824 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.713 -11.381 -2.764 20.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.167 4.167 3 Si 0.743 3.257 4 H -0.172 1.172 5 H -0.154 1.154 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.059 0.941 9 C 0.131 3.869 10 H 0.077 0.923 11 C -0.112 4.112 12 Cl -0.166 7.166 13 O -0.211 6.211 14 C 0.107 3.893 15 C -0.236 4.236 16 C -0.051 4.051 17 C -0.161 4.161 18 C -0.014 4.014 19 N -0.148 5.148 20 C -0.041 4.041 21 C -0.125 4.125 22 C -0.088 4.088 23 C -0.102 4.102 24 C -0.125 4.125 25 C -0.077 4.077 26 N -0.136 5.136 27 C -0.080 4.080 28 H 0.089 0.911 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.162 0.838 32 H 0.193 0.807 33 H 0.187 0.813 34 H 0.180 0.820 35 H 0.201 0.799 36 H 0.193 0.807 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 16.518 -11.350 -2.638 20.214 hybrid contribution -0.695 1.226 0.340 1.449 sum 15.823 -10.124 -2.299 18.925 Atomic orbital electron populations 1.69953 1.08117 1.29294 1.48532 1.25689 0.95661 1.02438 0.92863 0.86250 0.80352 0.78611 0.80492 1.17222 1.15432 1.20100 1.20862 0.88580 0.94536 1.54180 0.94117 1.20724 0.93502 0.78346 0.94296 0.92268 1.25827 0.78667 1.03186 1.03497 1.98664 1.20183 1.98863 1.98927 1.86184 1.39875 1.32148 1.62855 1.18843 0.87525 0.91495 0.91403 1.21294 0.99621 0.99318 1.03349 1.21010 0.92676 0.98060 0.93391 1.20900 1.02490 0.89497 1.03253 1.20843 0.91927 0.93417 0.95235 1.68908 1.28496 0.98164 1.19281 1.21438 0.92448 0.95772 0.94452 1.21174 1.01905 0.87881 1.01559 1.21517 0.93215 1.01115 0.92957 1.21438 0.95708 0.96483 0.96550 1.21132 1.00481 0.91132 0.99724 1.21427 0.95370 0.92119 0.98811 1.68691 1.28224 0.99612 1.17105 1.20479 0.95920 0.91645 0.99936 0.91136 0.88749 0.88194 0.83839 0.80671 0.81339 0.82005 0.79898 0.80665 0.84394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.39 13.96 21.45 0.30 -54.10 16 2 C 0.04 1.91 5.45 84.65 0.46 2.37 16 3 Si 0.92 38.93 24.41 68.60 1.67 40.60 16 4 H -0.25 -9.66 6.83 99.48 0.68 -8.98 16 5 H -0.23 -8.80 6.53 99.48 0.65 -8.15 16 6 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.54 -30.83 9.47 25.60 0.24 -30.58 16 8 H 0.04 2.67 8.06 -2.91 -0.02 2.64 16 9 C 0.19 8.82 1.74 29.85 0.05 8.87 16 10 H 0.06 2.67 4.57 -2.39 -0.01 2.66 16 11 C -0.05 -2.03 5.83 71.98 0.42 -1.61 16 12 Cl -0.19 -6.83 25.64 -2.72 -0.07 -6.90 16 13 O -0.30 -14.57 9.49 -90.94 -0.86 -15.43 16 14 C 0.16 6.61 6.26 22.67 0.14 6.75 16 15 C -0.21 -7.48 7.12 22.09 0.16 -7.33 16 16 C -0.03 -0.82 9.89 21.99 0.22 -0.60 16 17 C -0.14 -3.91 9.99 22.40 0.22 -3.69 16 18 C 0.12 4.27 6.73 41.90 0.28 4.55 16 19 N -0.43 -14.17 10.42 -173.72 -1.81 -15.98 16 20 C 0.10 2.98 6.73 41.93 0.28 3.26 16 21 C -0.11 -2.09 10.00 22.40 0.22 -1.86 16 22 C -0.07 -0.89 9.90 22.01 0.22 -0.67 16 23 C -0.08 -1.27 9.90 22.01 0.22 -1.05 16 24 C -0.11 -2.72 10.00 22.41 0.22 -2.50 16 25 C 0.06 2.13 6.73 41.94 0.28 2.41 16 26 N -0.42 -17.92 10.21 -173.35 -1.77 -19.69 16 27 C 0.06 2.42 6.75 42.10 0.28 2.71 16 28 H 0.28 15.08 8.31 -92.71 -0.77 14.31 16 29 H 0.09 3.79 3.21 -2.39 -0.01 3.78 16 30 H 0.10 4.13 8.14 -2.39 -0.02 4.11 16 31 H 0.14 4.99 4.67 -2.91 -0.01 4.97 16 32 H 0.18 3.07 8.06 -2.91 -0.02 3.05 16 33 H 0.17 3.49 8.06 -2.91 -0.02 3.47 16 34 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 35 H 0.18 0.68 8.06 -2.91 -0.02 0.66 16 36 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 37 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -73.95 322.40 2.44 -71.51 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 1.05 Total: 18.96 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: 3.93 Total: -18.97 kcal Atomic # 7 Polarization: -86.49 SS G_CDS: -3.28 Total: -89.77 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.86 Total: -15.43 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 1.67 Total: 40.60 kcal Atomic # 17 Polarization: -6.83 SS G_CDS: -0.07 Total: -6.90 kcal Total: -73.95 2.44 -71.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228519823.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.170 kcal (2) G-P(sol) polarization free energy of solvation -73.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds