Wall clock time and date at job start Tue Mar 31 2020 15:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00058 * 2 1 4 4 H 1.48506 * 109.47144 * 270.00034 * 3 2 1 5 5 H 1.48500 * 109.47223 * 29.99891 * 3 2 1 6 6 H 1.48500 * 109.47308 * 150.00453 * 3 2 1 7 7 C 1.37877 * 120.00256 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00666 * 176.39274 * 7 2 1 9 9 C 1.50702 * 119.99560 * 356.38640 * 7 2 1 10 10 H 1.08997 * 109.47007 * 33.76167 * 9 7 2 11 11 C 1.53004 * 109.46933 * 153.75192 * 9 7 2 12 12 Cl 1.80293 * 109.47371 * 185.61976 * 11 9 7 13 13 O 1.42898 * 109.47389 * 273.75288 * 9 7 2 14 14 C 1.35795 * 116.99923 * 141.94105 * 13 9 7 15 15 C 1.40168 * 119.20905 * 5.79951 * 14 13 9 16 16 C 1.35577 * 121.64639 * 180.02562 * 15 14 13 17 17 C 1.41261 * 119.66237 * 0.02562 * 16 15 14 18 18 N 1.32800 * 121.02259 * 180.02562 * 17 16 15 19 19 C 1.32885 * 119.58551 * 179.97438 * 18 17 16 20 20 C 1.41151 * 121.08533 * 180.02562 * 19 18 17 21 21 C 1.35744 * 119.59209 * 179.97438 * 20 19 18 22 22 C 1.39580 * 121.71882 * 0.04197 * 21 20 19 23 23 C 1.35744 * 121.70970 * 359.95711 * 22 21 20 24 24 C 1.41130 * 119.58907 * 0.02562 * 23 22 21 25 25 N 1.32898 * 121.06432 * 180.02562 * 24 23 22 26 26 C 1.32952 * 119.52853 * 179.97438 * 25 24 23 27 27 C 1.36260 * 119.21247 * 185.53790 * 14 13 9 28 28 H 0.96995 * 119.99948 * 185.90249 * 1 2 3 29 29 H 1.08997 * 109.47476 * 305.62718 * 11 9 7 30 30 H 1.09002 * 109.46564 * 65.62320 * 11 9 7 31 31 H 1.08003 * 119.17751 * 0.02562 * 15 14 13 32 32 H 1.08005 * 120.16899 * 180.02562 * 16 15 14 33 33 H 1.07995 * 120.20585 * 359.95500 * 20 19 18 34 34 H 1.07996 * 119.13979 * 180.02562 * 21 20 19 35 35 H 1.08003 * 119.13923 * 179.97438 * 22 21 20 36 36 H 1.07999 * 120.20029 * 180.02562 * 23 22 21 37 37 H 1.07998 * 120.20719 * 359.96918 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0830 -1.1950 -0.0594 9 6 1.2532 -2.4978 0.0811 10 1 0.3018 -2.4023 -0.4420 11 6 2.0835 -3.6064 -0.5690 12 17 1.1189 -5.1287 -0.6197 13 8 1.0128 -2.8241 1.4515 14 6 -0.1846 -3.3912 1.7492 15 6 -1.0561 -3.7361 0.7071 16 6 -2.2634 -4.3041 0.9479 17 6 -2.6632 -4.5586 2.2787 18 7 -3.8395 -5.1142 2.5455 19 6 -4.1865 -5.3414 3.8080 20 6 -5.4286 -5.9307 4.1276 21 6 -5.7520 -6.1495 5.4277 22 6 -4.8863 -5.8056 6.4672 23 6 -3.6772 -5.2358 6.2298 24 6 -3.2762 -4.9801 4.9010 25 7 -2.0989 -4.4240 4.6350 26 6 -1.7518 -4.1971 3.3718 27 6 -0.5078 -3.6162 3.0537 28 1 -0.4850 -0.8356 0.0864 29 1 2.3516 -3.3122 -1.5837 30 1 2.9903 -3.7702 0.0133 31 1 -0.7585 -3.5446 -0.3133 32 1 -2.9161 -4.5607 0.1266 33 1 -6.1176 -6.2056 3.3428 34 1 -6.7041 -6.6013 5.6640 35 1 -5.1861 -5.9980 7.4868 36 1 -3.0263 -4.9799 7.0527 37 1 0.1826 -3.3460 3.8390 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228739607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:41 Heat of formation + Delta-G solvation = 37.326361 kcal Electronic energy + Delta-G solvation = -24385.246425 eV Core-core repulsion = 20732.647700 eV Total energy + Delta-G solvation = -3652.598725 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.01686 -39.35393 -37.61087 -35.56453 -35.08123 -34.93430 -33.45395 -31.41888 -30.33346 -29.81049 -28.76872 -25.50494 -24.94504 -24.00242 -22.26702 -21.98804 -21.46178 -19.52995 -18.53758 -17.70068 -16.95798 -16.50855 -15.85550 -15.29636 -15.12587 -14.65415 -14.39937 -14.21129 -13.97553 -13.88112 -13.67825 -13.56514 -12.80409 -12.60431 -12.52310 -12.19823 -11.94364 -11.84829 -11.77096 -11.61593 -11.52831 -11.08774 -11.06006 -10.70130 -10.44480 -10.33847 -9.92406 -9.53253 -9.23496 -8.99881 -8.87265 -8.77996 -8.11618 -7.35788 -6.90525 -4.76329 -0.18827 0.55673 1.45557 2.49004 2.53002 2.73758 3.19259 3.27394 3.42369 3.54894 3.78855 4.12210 4.13360 4.18755 4.35892 4.41891 4.65028 4.78381 5.00159 5.04263 5.09413 5.14482 5.28726 5.45766 5.57931 5.64944 5.65654 5.85344 5.86185 5.96329 6.03546 6.21707 6.26479 6.28514 6.38842 6.42461 6.54479 6.68337 6.92168 7.36015 7.49641 7.86694 7.93330 8.19747 8.28504 9.02941 10.45719 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016528 B = 0.003433 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.696092 B = 8153.101087 C = 9048.532808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.037 3.963 3 Si 1.079 2.921 4 H -0.281 1.281 5 H -0.279 1.279 6 H -0.282 1.282 7 C -0.597 4.597 8 H 0.068 0.932 9 C 0.167 3.833 10 H 0.060 0.940 11 C -0.030 4.030 12 Cl -0.217 7.217 13 O -0.303 6.303 14 C 0.195 3.805 15 C -0.136 4.136 16 C -0.064 4.064 17 C 0.083 3.917 18 N -0.405 5.405 19 C 0.071 3.929 20 C -0.074 4.074 21 C -0.116 4.116 22 C -0.098 4.098 23 C -0.091 4.091 24 C 0.112 3.888 25 N -0.434 5.434 26 C 0.159 3.841 27 C -0.186 4.186 28 H 0.273 0.727 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.149 0.851 32 H 0.142 0.858 33 H 0.136 0.864 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.138 0.862 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.521 -9.565 5.467 12.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.173 4.173 3 Si 0.905 3.095 4 H -0.207 1.207 5 H -0.204 1.204 6 H -0.207 1.207 7 C -0.633 4.633 8 H 0.087 0.913 9 C 0.114 3.886 10 H 0.077 0.923 11 C -0.093 4.093 12 Cl -0.191 7.191 13 O -0.214 6.214 14 C 0.143 3.857 15 C -0.157 4.157 16 C -0.084 4.084 17 C -0.057 4.057 18 N -0.119 5.119 19 C -0.066 4.066 20 C -0.094 4.094 21 C -0.137 4.137 22 C -0.119 4.119 23 C -0.111 4.111 24 C -0.026 4.026 25 N -0.151 5.151 26 C 0.023 3.977 27 C -0.207 4.207 28 H 0.085 0.915 29 H 0.121 0.879 30 H 0.110 0.890 31 H 0.166 0.834 32 H 0.159 0.841 33 H 0.154 0.846 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.155 0.845 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.597 -7.999 5.475 11.725 hybrid contribution 0.104 -1.814 -0.082 1.819 sum -6.492 -9.813 5.393 12.943 Atomic orbital electron populations 1.70812 1.07053 1.31558 1.41025 1.26237 0.96241 1.03472 0.91364 0.83395 0.74868 0.73948 0.77336 1.20745 1.20408 1.20736 1.21907 0.95473 0.89434 1.56444 0.91341 1.20938 0.97029 0.92234 0.78363 0.92277 1.25292 0.96892 0.82844 1.04267 1.98681 1.76920 1.44295 1.99231 1.86740 1.29514 1.70875 1.34288 1.18977 0.86735 0.87575 0.92459 1.21611 0.94163 0.98937 1.01007 1.20615 0.95901 0.97958 0.93898 1.20764 0.91039 0.98989 0.94923 1.68612 1.14810 1.08878 1.19610 1.20669 0.96166 1.00758 0.88985 1.20805 0.94029 0.97456 0.97108 1.20805 1.00096 1.00503 0.92275 1.20854 0.93654 0.97750 0.99661 1.20823 0.96905 0.99196 0.94152 1.20793 0.90748 0.96346 0.94673 1.68809 1.14940 1.11832 1.19477 1.20357 0.94203 0.94806 0.88379 1.19688 0.96475 1.09411 0.95163 0.91527 0.87893 0.89011 0.83379 0.84073 0.84597 0.85240 0.85196 0.84453 0.83945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.57 13.61 55.43 0.75 -22.81 16 2 C 0.04 0.93 5.46 -17.82 -0.10 0.84 16 3 Si 1.08 22.42 29.90 -169.99 -5.08 17.33 16 4 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 6 H -0.28 -5.60 7.11 56.52 0.40 -5.19 16 7 C -0.60 -14.58 8.69 -34.44 -0.30 -14.88 16 8 H 0.07 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.17 3.66 1.88 -27.88 -0.05 3.61 16 10 H 0.06 1.34 3.94 -51.93 -0.20 1.14 16 11 C -0.03 -0.55 6.31 37.16 0.23 -0.32 16 12 Cl -0.22 -3.73 25.57 -51.86 -1.33 -5.06 16 13 O -0.30 -6.84 9.65 -19.10 -0.18 -7.03 16 14 C 0.19 4.03 6.18 -39.57 -0.24 3.78 16 15 C -0.14 -2.56 7.00 -39.81 -0.28 -2.84 16 16 C -0.06 -1.13 9.99 -39.38 -0.39 -1.52 16 17 C 0.08 1.57 6.74 -82.82 -0.56 1.01 16 18 N -0.41 -7.24 10.41 -6.22 -0.06 -7.31 16 19 C 0.07 1.16 6.73 -82.86 -0.56 0.60 16 20 C -0.07 -0.92 10.00 -39.37 -0.39 -1.31 16 21 C -0.12 -1.12 9.90 -39.97 -0.40 -1.51 16 22 C -0.10 -0.96 9.90 -39.97 -0.40 -1.35 16 23 C -0.09 -1.15 10.00 -39.38 -0.39 -1.55 16 24 C 0.11 1.87 6.73 -82.87 -0.56 1.31 16 25 N -0.43 -8.20 10.42 -6.27 -0.07 -8.26 16 26 C 0.16 3.15 6.73 -82.88 -0.56 2.59 16 27 C -0.19 -3.76 9.89 -39.27 -0.39 -4.15 16 28 H 0.27 7.33 6.66 -40.82 -0.27 7.06 16 29 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 30 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 31 H 0.15 2.74 4.62 -52.48 -0.24 2.50 16 32 H 0.14 2.11 8.06 -52.48 -0.42 1.69 16 33 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 36 H 0.14 1.52 8.06 -52.49 -0.42 1.09 16 37 H 0.14 2.80 8.06 -52.49 -0.42 2.37 16 LS Contribution 330.68 15.07 4.98 4.98 Total: -1.00 -28.69 330.68 -9.62 -38.31 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -3.31 Total: 5.52 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -5.33 Total: -15.68 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.62 Total: -38.38 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -0.18 Total: -7.03 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.08 Total: 17.33 kcal Atomic # 17 Polarization: -3.73 SS G_CDS: -1.33 Total: -5.06 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.69 -9.62 -38.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228739607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.636 kcal (2) G-P(sol) polarization free energy of solvation -28.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds