Wall clock time and date at job start Tue Mar 31 2020 15:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00058 * 2 1 4 4 H 1.48506 * 109.47144 * 270.00034 * 3 2 1 5 5 H 1.48500 * 109.47223 * 29.99891 * 3 2 1 6 6 H 1.48500 * 109.47308 * 150.00453 * 3 2 1 7 7 C 1.37877 * 120.00256 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00666 * 176.39274 * 7 2 1 9 9 C 1.50702 * 119.99560 * 356.38640 * 7 2 1 10 10 H 1.08997 * 109.47007 * 33.76167 * 9 7 2 11 11 C 1.53004 * 109.46933 * 153.75192 * 9 7 2 12 12 Cl 1.80293 * 109.47371 * 185.61976 * 11 9 7 13 13 O 1.42898 * 109.47389 * 273.75288 * 9 7 2 14 14 C 1.35795 * 116.99923 * 141.94105 * 13 9 7 15 15 C 1.40168 * 119.20905 * 5.79951 * 14 13 9 16 16 C 1.35577 * 121.64639 * 180.02562 * 15 14 13 17 17 C 1.41261 * 119.66237 * 0.02562 * 16 15 14 18 18 N 1.32800 * 121.02259 * 180.02562 * 17 16 15 19 19 C 1.32885 * 119.58551 * 179.97438 * 18 17 16 20 20 C 1.41151 * 121.08533 * 180.02562 * 19 18 17 21 21 C 1.35744 * 119.59209 * 179.97438 * 20 19 18 22 22 C 1.39580 * 121.71882 * 0.04197 * 21 20 19 23 23 C 1.35744 * 121.70970 * 359.95711 * 22 21 20 24 24 C 1.41130 * 119.58907 * 0.02562 * 23 22 21 25 25 N 1.32898 * 121.06432 * 180.02562 * 24 23 22 26 26 C 1.32952 * 119.52853 * 179.97438 * 25 24 23 27 27 C 1.36260 * 119.21247 * 185.53790 * 14 13 9 28 28 H 0.96995 * 119.99948 * 185.90249 * 1 2 3 29 29 H 1.08997 * 109.47476 * 305.62718 * 11 9 7 30 30 H 1.09002 * 109.46564 * 65.62320 * 11 9 7 31 31 H 1.08003 * 119.17751 * 0.02562 * 15 14 13 32 32 H 1.08005 * 120.16899 * 180.02562 * 16 15 14 33 33 H 1.07995 * 120.20585 * 359.95500 * 20 19 18 34 34 H 1.07996 * 119.13979 * 180.02562 * 21 20 19 35 35 H 1.08003 * 119.13923 * 179.97438 * 22 21 20 36 36 H 1.07999 * 120.20029 * 180.02562 * 23 22 21 37 37 H 1.07998 * 120.20719 * 359.96918 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0830 -1.1950 -0.0594 9 6 1.2532 -2.4978 0.0811 10 1 0.3018 -2.4023 -0.4420 11 6 2.0835 -3.6064 -0.5690 12 17 1.1189 -5.1287 -0.6197 13 8 1.0128 -2.8241 1.4515 14 6 -0.1846 -3.3912 1.7492 15 6 -1.0561 -3.7361 0.7071 16 6 -2.2634 -4.3041 0.9479 17 6 -2.6632 -4.5586 2.2787 18 7 -3.8395 -5.1142 2.5455 19 6 -4.1865 -5.3414 3.8080 20 6 -5.4286 -5.9307 4.1276 21 6 -5.7520 -6.1495 5.4277 22 6 -4.8863 -5.8056 6.4672 23 6 -3.6772 -5.2358 6.2298 24 6 -3.2762 -4.9801 4.9010 25 7 -2.0989 -4.4240 4.6350 26 6 -1.7518 -4.1971 3.3718 27 6 -0.5078 -3.6162 3.0537 28 1 -0.4850 -0.8356 0.0864 29 1 2.3516 -3.3122 -1.5837 30 1 2.9903 -3.7702 0.0133 31 1 -0.7585 -3.5446 -0.3133 32 1 -2.9161 -4.5607 0.1266 33 1 -6.1176 -6.2056 3.3428 34 1 -6.7041 -6.6013 5.6640 35 1 -5.1861 -5.9980 7.4868 36 1 -3.0263 -4.9799 7.0527 37 1 0.1826 -3.3460 3.8390 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228739607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:40 Heat of formation + Delta-G solvation = 21.086890 kcal Electronic energy + Delta-G solvation = -24385.950621 eV Core-core repulsion = 20732.647700 eV Total energy + Delta-G solvation = -3653.302921 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.31763 -40.84211 -38.85169 -36.97959 -36.42670 -36.29651 -35.21795 -32.72808 -31.82380 -31.02501 -30.12087 -26.93897 -26.57749 -25.34899 -23.73735 -23.17698 -22.86753 -20.86431 -19.89448 -19.37733 -18.40600 -17.76468 -17.19864 -16.62540 -16.49872 -16.08775 -15.79304 -15.61124 -15.35025 -15.19469 -15.10184 -14.89450 -14.19968 -14.07475 -13.99014 -13.69348 -13.29945 -13.14579 -12.90460 -12.83116 -12.75250 -12.67965 -12.48872 -12.22295 -11.96191 -11.82650 -11.37504 -11.15417 -10.80848 -10.61716 -10.23555 -10.18618 -9.37120 -8.87113 -8.76625 -6.72375 -1.42481 -0.71451 0.24422 1.20400 1.27635 1.30162 1.53080 1.61351 1.79642 2.21839 2.35224 2.50635 2.84088 2.90940 3.02871 3.04940 3.30056 3.40013 3.63589 3.77383 3.95114 3.98949 4.08496 4.14440 4.20400 4.29365 4.42737 4.50590 4.68460 4.76250 4.79065 4.87802 5.00727 5.09867 5.15624 5.21812 5.35606 5.39717 5.56510 5.77924 5.93232 6.18205 6.28717 6.59393 6.61697 7.14954 8.50152 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016528 B = 0.003433 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.696092 B = 8153.101087 C = 9048.532808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.008 4.008 3 Si 1.120 2.880 4 H -0.262 1.262 5 H -0.288 1.288 6 H -0.268 1.268 7 C -0.610 4.610 8 H 0.071 0.929 9 C 0.166 3.834 10 H 0.048 0.952 11 C -0.023 4.023 12 Cl -0.205 7.205 13 O -0.324 6.324 14 C 0.176 3.824 15 C -0.148 4.148 16 C -0.052 4.052 17 C 0.057 3.943 18 N -0.413 5.413 19 C 0.061 3.939 20 C -0.094 4.094 21 C -0.085 4.085 22 C -0.066 4.066 23 C -0.116 4.116 24 C 0.096 3.904 25 N -0.455 5.455 26 C 0.133 3.867 27 C -0.194 4.194 28 H 0.262 0.738 29 H 0.118 0.882 30 H 0.097 0.903 31 H 0.148 0.852 32 H 0.165 0.835 33 H 0.155 0.845 34 H 0.180 0.820 35 H 0.180 0.820 36 H 0.149 0.851 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.979 -11.360 7.336 16.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.212 4.212 3 Si 0.940 3.060 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.646 4.646 8 H 0.089 0.911 9 C 0.113 3.887 10 H 0.066 0.934 11 C -0.086 4.086 12 Cl -0.179 7.179 13 O -0.237 6.237 14 C 0.126 3.874 15 C -0.169 4.169 16 C -0.071 4.071 17 C -0.080 4.080 18 N -0.128 5.128 19 C -0.078 4.078 20 C -0.113 4.113 21 C -0.106 4.106 22 C -0.087 4.087 23 C -0.135 4.135 24 C -0.042 4.042 25 N -0.172 5.172 26 C -0.002 4.002 27 C -0.215 4.215 28 H 0.073 0.927 29 H 0.137 0.863 30 H 0.116 0.884 31 H 0.165 0.835 32 H 0.183 0.817 33 H 0.173 0.827 34 H 0.198 0.802 35 H 0.197 0.803 36 H 0.167 0.833 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.021 -9.808 7.304 15.196 hybrid contribution 0.498 -1.541 -0.281 1.643 sum -8.523 -11.348 7.024 15.835 Atomic orbital electron populations 1.70906 1.08070 1.31001 1.44076 1.27508 0.96278 1.06800 0.90592 0.82894 0.74193 0.70521 0.78353 1.18732 1.21346 1.19229 1.22252 0.95830 0.90693 1.55822 0.91063 1.20862 0.96801 0.92897 0.78136 0.93434 1.25086 0.96257 0.82472 1.04789 1.98679 1.76790 1.43211 1.99225 1.86584 1.30758 1.72172 1.34199 1.19043 0.86495 0.88772 0.93132 1.21489 0.94705 1.00418 1.00321 1.20838 0.95476 0.96464 0.94346 1.20832 0.91713 1.00475 0.95027 1.68633 1.14212 1.09133 1.20778 1.21368 0.97630 1.00402 0.88415 1.21152 0.92773 0.98120 0.99294 1.21457 1.01349 0.97053 0.90740 1.21496 0.91489 0.93483 1.02202 1.21123 0.98894 1.00954 0.92572 1.21479 0.90139 0.95879 0.96752 1.68771 1.16528 1.12745 1.19154 1.20354 0.94376 0.96194 0.89307 1.19702 0.97025 1.09913 0.94899 0.92699 0.86339 0.88445 0.83488 0.81719 0.82721 0.80240 0.80317 0.83295 0.84744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.15 13.61 21.45 0.29 -50.85 16 2 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 3 Si 1.12 45.86 29.90 68.60 2.05 47.92 16 4 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 5 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 7 C -0.61 -30.71 8.69 25.60 0.22 -30.49 16 8 H 0.07 3.45 7.81 -2.91 -0.02 3.42 16 9 C 0.17 7.61 1.88 29.85 0.06 7.66 16 10 H 0.05 2.29 3.94 -2.39 -0.01 2.28 16 11 C -0.02 -0.87 6.31 71.98 0.45 -0.42 16 12 Cl -0.21 -7.16 25.57 -2.72 -0.07 -7.23 16 13 O -0.32 -15.58 9.65 -91.25 -0.88 -16.46 16 14 C 0.18 7.81 6.18 22.28 0.14 7.95 16 15 C -0.15 -5.92 7.00 22.12 0.15 -5.77 16 16 C -0.05 -1.90 9.99 22.40 0.22 -1.68 16 17 C 0.06 2.25 6.74 41.99 0.28 2.53 16 18 N -0.41 -14.78 10.41 -173.59 -1.81 -16.59 16 19 C 0.06 1.90 6.73 41.93 0.28 2.18 16 20 C -0.09 -1.95 10.00 22.41 0.22 -1.73 16 21 C -0.09 -1.11 9.90 22.02 0.22 -0.89 16 22 C -0.07 -0.89 9.90 22.02 0.22 -0.68 16 23 C -0.12 -2.59 10.00 22.40 0.22 -2.37 16 24 C 0.10 3.12 6.73 41.92 0.28 3.41 16 25 N -0.46 -17.76 10.42 -173.76 -1.81 -19.57 16 26 C 0.13 5.56 6.73 41.89 0.28 5.85 16 27 C -0.19 -8.47 9.89 22.47 0.22 -8.25 16 28 H 0.26 14.94 6.66 -92.71 -0.62 14.32 16 29 H 0.12 3.97 8.14 -2.39 -0.02 3.95 16 30 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 31 H 0.15 5.79 4.62 -2.91 -0.01 5.78 16 32 H 0.17 5.02 8.06 -2.91 -0.02 4.99 16 33 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 34 H 0.18 0.73 8.06 -2.91 -0.02 0.70 16 35 H 0.18 0.84 8.06 -2.91 -0.02 0.81 16 36 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 37 H 0.13 5.80 8.06 -2.91 -0.02 5.78 16 Total: -1.00 -67.46 330.68 3.00 -64.46 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 1.28 Total: 20.98 kcal Atomic # 6 Polarization: -26.61 SS G_CDS: 3.95 Total: -22.66 kcal Atomic # 7 Polarization: -83.69 SS G_CDS: -3.32 Total: -87.01 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.88 Total: -16.46 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.05 Total: 47.92 kcal Atomic # 17 Polarization: -7.16 SS G_CDS: -0.07 Total: -7.23 kcal Total: -67.46 3.00 -64.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228739607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.545 kcal (2) G-P(sol) polarization free energy of solvation -67.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds