Wall clock time and date at job start Tue Mar 31 2020 15:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00368 * 2 1 4 4 H 1.48506 * 109.46837 * 269.99996 * 3 2 1 5 5 H 1.48503 * 109.46962 * 29.99701 * 3 2 1 6 6 H 1.48494 * 109.47192 * 149.99808 * 3 2 1 7 7 C 1.37878 * 119.99857 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00384 * 184.19653 * 7 2 1 9 9 C 1.50699 * 120.00145 * 4.18916 * 7 2 1 10 10 H 1.09003 * 109.47142 * 31.18024 * 9 7 2 11 11 O 1.42895 * 109.47541 * 151.18080 * 9 7 2 12 12 C 1.36019 * 117.00221 * 276.22607 * 11 9 7 13 13 C 1.40020 * 119.20073 * 5.69416 * 12 11 9 14 14 C 1.35601 * 121.79273 * 180.02562 * 13 12 11 15 15 C 1.41162 * 119.69101 * 359.97438 * 14 13 12 16 16 N 1.32121 * 134.59366 * 180.02562 * 15 14 13 17 17 N 1.39951 * 108.95220 * 180.02562 * 16 15 14 18 18 H 0.97001 * 125.03583 * 179.97438 * 17 16 15 19 19 C 1.34085 * 109.93164 * 359.97438 * 17 16 15 20 20 C 1.38206 * 107.90584 * 0.02562 * 19 17 16 21 21 C 1.36168 * 119.20566 * 185.42374 * 12 11 9 22 22 Cl 1.73598 * 120.25819 * 0.02562 * 21 12 11 23 23 C 1.50703 * 109.47221 * 271.18384 * 9 7 2 24 24 C 1.38240 * 119.99819 * 279.02462 * 23 9 7 25 25 C 1.38231 * 120.00040 * 179.80791 * 24 23 9 26 26 C 1.38237 * 119.99790 * 0.40218 * 25 24 23 27 27 C 1.38235 * 120.00371 * 359.85288 * 26 25 24 28 28 C 1.38237 * 120.00242 * 99.29873 * 23 9 7 29 29 H 0.97001 * 120.00025 * 0.02562 * 1 2 3 30 30 H 1.08009 * 119.10268 * 359.97438 * 13 12 11 31 31 H 1.08005 * 120.15688 * 180.02562 * 14 13 12 32 32 H 1.08000 * 126.04833 * 180.02562 * 19 17 16 33 33 H 1.07996 * 119.99888 * 359.97438 * 24 23 9 34 34 H 1.07995 * 120.00151 * 180.22970 * 25 24 23 35 35 H 1.08000 * 119.99956 * 179.83097 * 26 25 24 36 36 H 1.07990 * 120.00295 * 179.97438 * 27 26 25 37 37 H 1.07996 * 119.99558 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0823 -1.1955 0.0679 9 6 1.2540 -2.4974 -0.0965 10 1 0.3463 -2.3517 -0.6821 11 8 2.0786 -3.4764 -0.7316 12 6 2.0958 -3.4809 -2.0917 13 6 1.4175 -2.4724 -2.7868 14 6 1.3997 -2.4265 -4.1419 15 6 2.0799 -3.4161 -4.8840 16 7 2.2545 -3.6534 -6.1719 17 7 3.0373 -4.8040 -6.3201 18 1 3.3069 -5.1886 -7.1688 19 6 3.3594 -5.2960 -5.1151 20 6 2.7931 -4.4770 -4.1565 21 6 2.7768 -4.4631 -2.7443 22 17 3.6113 -5.6931 -1.8475 23 6 0.8886 -2.9697 1.2872 24 6 1.8249 -3.6276 2.0627 25 6 1.4910 -4.0573 3.3334 26 6 0.2182 -3.8365 3.8255 27 6 -0.7198 -3.1832 3.0480 28 6 -0.3846 -2.7500 1.7788 29 1 -0.4850 0.8401 -0.0004 30 1 0.8935 -1.7106 -2.2284 31 1 0.8682 -1.6360 -4.6511 32 1 3.9559 -6.1764 -4.9268 33 1 2.8181 -3.8035 1.6768 34 1 2.2236 -4.5680 3.9407 35 1 -0.0436 -4.1746 4.8172 36 1 -1.7142 -3.0111 3.4323 37 1 -1.1173 -2.2396 1.1714 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229177504.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:00 Heat of formation + Delta-G solvation = 61.270498 kcal Electronic energy + Delta-G solvation = -24719.058927 eV Core-core repulsion = 21067.498498 eV Total energy + Delta-G solvation = -3651.560429 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.24381 -40.59908 -39.40329 -37.41854 -36.69899 -35.03438 -32.90989 -32.22592 -31.54739 -31.44479 -29.43003 -28.41149 -25.24477 -25.14318 -23.26911 -22.74760 -21.90543 -21.47516 -19.27940 -18.84517 -18.54940 -17.77539 -17.40873 -16.64994 -16.27618 -16.07600 -15.61509 -15.50943 -15.40288 -15.33374 -14.81842 -14.28926 -14.01931 -13.99876 -13.73457 -13.53545 -13.23699 -13.08736 -12.81141 -12.67936 -12.51992 -12.14706 -12.11048 -11.84488 -11.76748 -11.45604 -11.27241 -11.24370 -10.65903 -10.59851 -9.64683 -9.56795 -9.33755 -8.34259 -8.11428 -6.36409 -0.45380 0.74389 0.75848 0.81951 1.31458 1.36059 1.38895 1.41686 1.49559 1.88445 2.34627 2.63720 2.73698 3.05892 3.23794 3.44623 3.74441 4.05189 4.22052 4.26889 4.32718 4.40941 4.43860 4.51029 4.62676 4.82432 4.89322 5.00296 5.01462 5.13057 5.24222 5.36398 5.41922 5.47016 5.63908 5.66608 5.80755 5.85679 5.95460 6.12745 6.28246 6.37878 6.46653 6.54786 6.95157 7.34141 8.80436 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.011383 B = 0.004928 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.313627 B = 5680.639332 C = 7282.238873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.041 3.959 3 Si 0.945 3.055 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.276 1.276 7 C -0.541 4.541 8 H 0.049 0.951 9 C 0.242 3.758 10 H 0.042 0.958 11 O -0.321 6.321 12 C 0.117 3.883 13 C -0.123 4.123 14 C -0.079 4.079 15 C 0.077 3.923 16 N -0.322 5.322 17 N -0.404 5.404 18 H 0.464 0.536 19 C 0.104 3.896 20 C -0.194 4.194 21 C -0.046 4.046 22 Cl -0.061 7.061 23 C -0.058 4.058 24 C -0.123 4.123 25 C -0.130 4.130 26 C -0.138 4.138 27 C -0.131 4.131 28 C -0.119 4.119 29 H 0.270 0.730 30 H 0.140 0.860 31 H 0.145 0.855 32 H 0.230 0.770 33 H 0.107 0.893 34 H 0.141 0.859 35 H 0.148 0.852 36 H 0.137 0.863 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.701 -10.883 -5.733 12.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.162 4.162 3 Si 0.771 3.229 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.201 1.201 7 C -0.578 4.578 8 H 0.068 0.932 9 C 0.188 3.812 10 H 0.060 0.940 11 O -0.234 6.234 12 C 0.069 3.931 13 C -0.146 4.146 14 C -0.100 4.100 15 C -0.076 4.076 16 N -0.152 5.152 17 N -0.109 5.109 18 H 0.313 0.687 19 C -0.053 4.053 20 C -0.204 4.204 21 C -0.076 4.076 22 Cl -0.032 7.032 23 C -0.059 4.059 24 C -0.141 4.141 25 C -0.148 4.148 26 C -0.155 4.155 27 C -0.149 4.149 28 C -0.137 4.137 29 H 0.079 0.921 30 H 0.158 0.842 31 H 0.163 0.837 32 H 0.247 0.753 33 H 0.125 0.875 34 H 0.159 0.841 35 H 0.166 0.834 36 H 0.155 0.845 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.429 -10.561 -6.736 12.988 hybrid contribution 0.575 1.015 0.490 1.266 sum 4.004 -9.546 -6.246 12.090 Atomic orbital electron populations 1.69957 1.06555 1.28178 1.48447 1.25436 0.95592 1.01488 0.93639 0.85744 0.78835 0.79810 0.78526 1.19707 1.20398 1.20073 1.21419 0.93251 0.90664 1.52515 0.93235 1.18957 0.90074 0.84574 0.87619 0.94023 1.86011 1.65961 1.56404 1.15065 1.18260 0.96795 0.93964 0.84130 1.21208 0.99991 0.98464 0.94938 1.19943 1.00176 0.97974 0.91873 1.20888 0.99247 0.96619 0.90867 1.77543 1.18368 1.03887 1.15400 1.46167 1.36523 1.19178 1.09001 0.68734 1.22996 0.99202 0.99584 0.83536 1.19113 1.09093 1.00804 0.91401 1.18874 1.05100 0.94415 0.89212 1.98289 1.76751 1.52701 1.75484 1.20129 0.93583 0.95147 0.97002 1.20982 0.98967 0.99158 0.94999 1.21337 0.97563 1.00759 0.95124 1.21324 0.93315 1.00299 1.00602 1.21309 1.00523 0.99228 0.93821 1.21000 0.95826 0.99701 0.97179 0.92057 0.84216 0.83719 0.75328 0.87451 0.84147 0.83419 0.84513 0.87425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.96 12.93 21.45 0.28 -46.68 16 2 C 0.04 2.14 5.37 84.66 0.45 2.60 16 3 Si 0.95 42.18 29.54 68.60 2.03 44.21 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.54 -28.69 7.55 25.60 0.19 -28.50 16 8 H 0.05 2.75 7.82 -2.91 -0.02 2.73 16 9 C 0.24 12.03 1.82 29.10 0.05 12.08 16 10 H 0.04 2.22 5.63 -2.39 -0.01 2.21 16 11 O -0.32 -15.09 8.42 -93.77 -0.79 -15.88 16 12 C 0.12 5.04 6.52 22.22 0.14 5.19 16 13 C -0.12 -5.22 8.52 22.09 0.19 -5.03 16 14 C -0.08 -2.91 10.08 22.38 0.23 -2.68 16 15 C 0.08 2.62 7.49 42.14 0.32 2.94 16 16 N -0.32 -9.52 12.70 -48.70 -0.62 -10.13 16 17 N -0.40 -7.77 7.19 -56.31 -0.40 -8.18 16 18 H 0.46 4.33 8.96 -213.41 -1.91 2.42 16 19 C 0.10 2.15 11.99 84.34 1.01 3.16 16 20 C -0.19 -6.13 6.19 -20.22 -0.13 -6.26 16 21 C -0.05 -1.70 6.35 22.53 0.14 -1.56 16 22 Cl -0.06 -1.98 28.37 -2.72 -0.08 -2.06 16 23 C -0.06 -2.71 4.96 -19.86 -0.10 -2.81 16 24 C -0.12 -5.18 9.36 22.27 0.21 -4.98 16 25 C -0.13 -4.47 10.05 22.27 0.22 -4.25 16 26 C -0.14 -4.38 10.05 22.27 0.22 -4.16 16 27 C -0.13 -4.67 10.05 22.27 0.22 -4.45 16 28 C -0.12 -5.20 9.67 22.27 0.22 -4.98 16 29 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 30 H 0.14 6.64 5.40 -2.91 -0.02 6.63 16 31 H 0.15 4.75 8.06 -2.91 -0.02 4.73 16 32 H 0.23 2.57 8.06 -2.91 -0.02 2.55 16 33 H 0.11 4.61 7.75 -2.91 -0.02 4.59 16 34 H 0.14 3.85 8.06 -2.91 -0.02 3.82 16 35 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 36 H 0.14 4.02 8.06 -2.92 -0.02 3.99 16 37 H 0.11 5.01 8.04 -2.91 -0.02 4.99 16 Total: -1.00 -65.02 338.69 3.24 -61.79 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -0.78 Total: 20.61 kcal Atomic # 6 Polarization: -47.28 SS G_CDS: 3.60 Total: -43.68 kcal Atomic # 7 Polarization: -64.24 SS G_CDS: -0.75 Total: -64.99 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.79 Total: -15.88 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 17 Polarization: -1.98 SS G_CDS: -0.08 Total: -2.06 kcal Total: -65.02 3.24 -61.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229177504.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.058 kcal (2) G-P(sol) polarization free energy of solvation -65.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds