Wall clock time and date at job start Tue Mar 31 2020 15:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99773 * 2 1 4 4 H 1.48497 * 109.46698 * 266.87775 * 3 2 1 5 5 H 1.48495 * 109.47490 * 26.87994 * 3 2 1 6 6 H 1.48503 * 109.47020 * 146.88547 * 3 2 1 7 7 C 1.37874 * 119.99743 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99835 * 359.68229 * 7 2 1 9 9 C 1.50697 * 119.99834 * 179.69159 * 7 2 1 10 10 H 1.09004 * 109.47284 * 30.20595 * 9 7 2 11 11 O 1.42903 * 109.47345 * 150.20799 * 9 7 2 12 12 C 1.35980 * 116.99785 * 273.35585 * 11 9 7 13 13 C 1.39403 * 119.81573 * 185.76596 * 12 11 9 14 14 C 1.36517 * 120.76805 * 179.97438 * 13 12 11 15 15 C 1.39274 * 120.06873 * 0.04085 * 14 13 12 16 16 N 1.37222 * 133.68573 * 180.02562 * 15 14 13 17 17 H 0.97000 * 125.46184 * 359.97394 * 16 15 14 18 18 N 1.39861 * 109.07473 * 179.97438 * 16 15 14 19 19 C 1.30310 * 110.08319 * 359.97438 * 18 16 15 20 20 Cl 1.73595 * 126.10661 * 180.02562 * 19 18 16 21 21 C 1.40763 * 119.60022 * 359.97438 * 15 14 13 22 22 C 1.37877 * 119.81899 * 5.49815 * 12 11 9 23 23 C 1.50701 * 109.46918 * 270.20645 * 9 7 2 24 24 C 1.38242 * 119.99973 * 98.57309 * 23 9 7 25 25 C 1.38230 * 119.99754 * 179.97438 * 24 23 9 26 26 C 1.38233 * 120.00397 * 359.97438 * 25 24 23 27 27 C 1.38237 * 119.99931 * 359.97438 * 26 25 24 28 28 C 1.38233 * 119.99850 * 0.07022 * 27 26 25 29 29 H 0.97004 * 119.99890 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.61636 * 359.97438 * 13 12 11 31 31 H 1.08004 * 119.96740 * 180.02562 * 14 13 12 32 32 H 1.07995 * 120.25914 * 359.97387 * 22 12 11 33 33 H 1.07999 * 119.99732 * 359.97438 * 24 23 9 34 34 H 1.08005 * 119.99780 * 180.02562 * 25 24 23 35 35 H 1.07999 * 120.00271 * 179.72197 * 26 25 24 36 36 H 1.08000 * 120.00204 * 179.97438 * 27 26 25 37 37 H 1.08002 * 119.99797 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5626 2.0082 -1.3980 5 1 1.4152 2.6708 0.6330 6 1 3.5122 1.4601 0.7649 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0061 9 6 3.5115 -1.1941 -0.0065 10 1 3.8773 -0.3043 0.5061 11 8 3.9910 -2.3612 0.6643 12 6 4.1362 -2.2816 2.0140 13 6 4.7122 -3.3414 2.7129 14 6 4.8679 -3.2819 4.0679 15 6 4.4489 -2.1541 4.7696 16 7 4.4677 -1.8017 6.0956 17 1 4.8141 -2.3482 6.8183 18 7 3.9072 -0.5283 6.2381 19 6 3.5411 -0.0679 5.0754 20 17 2.7999 1.4723 4.7722 21 6 3.8657 -1.0788 4.0731 22 6 3.7180 -1.1509 2.6831 23 6 4.0071 -1.1934 -1.4297 24 6 4.4030 -0.0093 -2.0232 25 6 4.8582 -0.0089 -3.3284 26 6 4.9180 -1.1924 -4.0400 27 6 4.5231 -2.3767 -3.4462 28 6 4.0671 -2.3770 -2.1413 29 1 -0.4850 0.8401 0.0004 30 1 5.0391 -4.2197 2.1762 31 1 5.3162 -4.1103 4.5963 32 1 3.2763 -0.3289 2.1394 33 1 4.3567 0.9153 -1.4670 34 1 5.1679 0.9162 -3.7919 35 1 5.2693 -1.1914 -5.0613 36 1 4.5694 -3.3013 -4.0023 37 1 3.7581 -3.3022 -1.6775 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231127944.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:06 Heat of formation + Delta-G solvation = 78.189597 kcal Electronic energy + Delta-G solvation = -24791.941600 eV Core-core repulsion = 21141.114838 eV Total energy + Delta-G solvation = -3650.826762 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.09953 -39.22312 -38.09994 -36.70414 -35.68645 -33.09399 -31.92828 -31.30258 -30.32441 -29.82264 -28.22531 -27.35871 -23.59808 -22.76383 -22.15496 -21.80863 -21.27861 -20.23097 -18.03310 -17.34173 -17.21797 -16.38616 -16.01046 -15.19909 -15.08998 -14.96265 -14.55419 -14.15921 -14.06359 -13.61384 -13.55571 -13.14655 -12.95778 -12.68845 -12.36848 -12.27430 -12.08712 -11.84223 -11.63585 -11.30987 -10.98877 -10.92303 -10.87456 -10.50018 -10.41322 -10.01598 -9.84417 -9.68849 -9.39797 -8.87991 -8.45834 -8.32702 -7.99186 -7.17359 -6.35888 -4.39450 1.01889 1.57252 1.83548 1.96216 2.01284 2.41637 3.06207 3.07687 3.10975 3.19258 3.99433 4.05101 4.12870 4.44631 4.63736 4.85037 4.96645 5.23221 5.40962 5.43224 5.44888 5.54531 5.62057 5.70751 5.81439 6.07247 6.14699 6.18869 6.28353 6.36846 6.46866 6.53880 6.64087 6.66196 6.97446 7.02395 7.11136 7.19081 7.28541 7.33996 7.50154 7.60473 8.02586 8.30703 8.75327 9.21770 10.75771 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.013082 B = 0.004918 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.772720 B = 5692.055612 C = 6993.279758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.089 3.911 3 Si 0.845 3.155 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.255 1.255 7 C -0.530 4.530 8 H 0.089 0.911 9 C 0.206 3.794 10 H 0.050 0.950 11 O -0.309 6.309 12 C 0.131 3.869 13 C -0.092 4.092 14 C -0.113 4.113 15 C 0.091 3.909 16 N -0.500 5.500 17 H 0.441 0.559 18 N -0.238 5.238 19 C 0.138 3.862 20 Cl 0.018 6.982 21 C -0.125 4.125 22 C -0.127 4.127 23 C -0.040 4.040 24 C -0.131 4.131 25 C -0.120 4.120 26 C -0.143 4.143 27 C -0.124 4.124 28 C -0.097 4.097 29 H 0.270 0.730 30 H 0.138 0.862 31 H 0.131 0.869 32 H 0.147 0.853 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.689 -2.867 4.545 11.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.116 4.116 3 Si 0.671 3.329 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.180 1.180 7 C -0.567 4.567 8 H 0.107 0.893 9 C 0.151 3.849 10 H 0.067 0.933 11 O -0.223 6.223 12 C 0.083 3.917 13 C -0.113 4.113 14 C -0.135 4.135 15 C -0.022 4.022 16 N -0.220 5.220 17 H 0.287 0.713 18 N -0.057 5.057 19 C -0.065 4.065 20 Cl 0.046 6.954 21 C -0.133 4.133 22 C -0.148 4.148 23 C -0.041 4.041 24 C -0.149 4.149 25 C -0.139 4.139 26 C -0.161 4.161 27 C -0.142 4.142 28 C -0.115 4.115 29 H 0.081 0.919 30 H 0.156 0.844 31 H 0.149 0.851 32 H 0.165 0.835 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.511 -2.518 5.594 12.170 hybrid contribution 0.040 0.981 -0.468 1.087 sum 10.551 -1.538 5.126 11.831 Atomic orbital electron populations 1.69844 1.06041 1.27536 1.47426 1.24856 0.94746 0.98473 0.93564 0.87440 0.80792 0.84796 0.79836 1.18590 1.20492 1.18048 1.21194 0.87458 0.95682 1.52366 0.89261 1.19602 0.95163 0.84035 0.86052 0.93260 1.85974 1.80401 1.40867 1.15018 1.18585 0.95478 0.93196 0.84440 1.20087 1.00165 0.98303 0.92730 1.19447 1.04963 0.96011 0.93086 1.18580 1.02413 0.96552 0.84690 1.45480 1.56962 1.13628 1.05975 0.71326 1.76391 1.13579 0.94948 1.20768 1.23713 1.00963 0.90522 0.91282 1.98412 1.79382 1.22740 1.94857 1.19208 1.06781 0.93321 0.93971 1.20921 1.02219 1.00032 0.91627 1.20184 0.93501 0.93120 0.97273 1.20911 1.00671 0.97508 0.95853 1.20914 1.00763 0.97717 0.94456 1.20917 1.02824 0.93002 0.99353 1.21069 1.00181 0.97602 0.95373 1.20911 0.98606 0.98272 0.93695 0.91917 0.84426 0.85101 0.83548 0.87244 0.86877 0.87003 0.86798 0.85861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.11 13.96 55.43 0.77 -24.34 16 2 C 0.09 2.41 5.47 -17.82 -0.10 2.31 16 3 Si 0.84 19.70 23.68 -169.99 -4.02 15.68 16 4 H -0.26 -5.89 6.70 56.52 0.38 -5.52 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.26 -5.56 5.82 56.52 0.33 -5.23 16 7 C -0.53 -13.97 8.44 -34.44 -0.29 -14.26 16 8 H 0.09 2.62 8.06 -52.49 -0.42 2.19 16 9 C 0.21 4.68 1.54 -29.04 -0.04 4.63 16 10 H 0.05 1.13 3.32 -51.93 -0.17 0.96 16 11 O -0.31 -6.53 9.05 -19.68 -0.18 -6.70 16 12 C 0.13 2.52 6.61 -39.28 -0.26 2.26 16 13 C -0.09 -1.39 9.90 -39.77 -0.39 -1.78 16 14 C -0.11 -1.50 10.01 -39.82 -0.40 -1.90 16 15 C 0.09 1.39 7.33 -84.11 -0.62 0.77 16 16 N -0.50 -6.74 7.38 32.38 0.24 -6.50 16 17 H 0.44 4.10 8.96 -182.78 -1.64 2.46 16 18 N -0.24 -3.83 12.55 34.13 0.43 -3.40 16 19 C 0.14 2.43 8.09 -15.09 -0.12 2.31 16 20 Cl 0.02 0.31 29.33 -51.86 -1.52 -1.21 16 21 C -0.12 -2.29 6.36 -105.18 -0.67 -2.96 16 22 C -0.13 -2.56 8.80 -39.06 -0.34 -2.91 16 23 C -0.04 -0.85 4.90 -104.62 -0.51 -1.36 16 24 C -0.13 -2.62 8.68 -39.58 -0.34 -2.96 16 25 C -0.12 -2.06 10.05 -39.59 -0.40 -2.45 16 26 C -0.14 -2.25 10.05 -39.58 -0.40 -2.65 16 27 C -0.12 -2.05 10.05 -39.58 -0.40 -2.44 16 28 C -0.10 -1.86 9.36 -39.58 -0.37 -2.23 16 29 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 32 H 0.15 3.26 4.58 -52.49 -0.24 3.02 16 33 H 0.11 2.17 5.26 -52.49 -0.28 1.89 16 34 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 35 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 37 H 0.12 2.32 7.73 -52.49 -0.41 1.91 16 LS Contribution 327.70 15.07 4.94 4.94 Total: -1.00 -29.72 327.70 -9.50 -39.22 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -4.50 Total: 7.95 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: -5.66 Total: -25.62 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 1.44 Total: -34.24 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -0.18 Total: -6.70 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.02 Total: 15.68 kcal Atomic # 17 Polarization: 0.31 SS G_CDS: -1.52 Total: -1.21 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.72 -9.50 -39.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231127944.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.410 kcal (2) G-P(sol) polarization free energy of solvation -29.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds