Wall clock time and date at job start Tue Mar 31 2020 15:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99773 * 2 1 4 4 H 1.48497 * 109.46698 * 266.87775 * 3 2 1 5 5 H 1.48495 * 109.47490 * 26.87994 * 3 2 1 6 6 H 1.48503 * 109.47020 * 146.88547 * 3 2 1 7 7 C 1.37874 * 119.99743 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99835 * 359.68229 * 7 2 1 9 9 C 1.50697 * 119.99834 * 179.69159 * 7 2 1 10 10 H 1.09004 * 109.47284 * 30.20595 * 9 7 2 11 11 O 1.42903 * 109.47345 * 150.20799 * 9 7 2 12 12 C 1.35980 * 116.99785 * 273.35585 * 11 9 7 13 13 C 1.39403 * 119.81573 * 185.76596 * 12 11 9 14 14 C 1.36517 * 120.76805 * 179.97438 * 13 12 11 15 15 C 1.39274 * 120.06873 * 0.04085 * 14 13 12 16 16 N 1.37222 * 133.68573 * 180.02562 * 15 14 13 17 17 H 0.97000 * 125.46184 * 359.97394 * 16 15 14 18 18 N 1.39861 * 109.07473 * 179.97438 * 16 15 14 19 19 C 1.30310 * 110.08319 * 359.97438 * 18 16 15 20 20 Cl 1.73595 * 126.10661 * 180.02562 * 19 18 16 21 21 C 1.40763 * 119.60022 * 359.97438 * 15 14 13 22 22 C 1.37877 * 119.81899 * 5.49815 * 12 11 9 23 23 C 1.50701 * 109.46918 * 270.20645 * 9 7 2 24 24 C 1.38242 * 119.99973 * 98.57309 * 23 9 7 25 25 C 1.38230 * 119.99754 * 179.97438 * 24 23 9 26 26 C 1.38233 * 120.00397 * 359.97438 * 25 24 23 27 27 C 1.38237 * 119.99931 * 359.97438 * 26 25 24 28 28 C 1.38233 * 119.99850 * 0.07022 * 27 26 25 29 29 H 0.97004 * 119.99890 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.61636 * 359.97438 * 13 12 11 31 31 H 1.08004 * 119.96740 * 180.02562 * 14 13 12 32 32 H 1.07995 * 120.25914 * 359.97387 * 22 12 11 33 33 H 1.07999 * 119.99732 * 359.97438 * 24 23 9 34 34 H 1.08005 * 119.99780 * 180.02562 * 25 24 23 35 35 H 1.07999 * 120.00271 * 179.72197 * 26 25 24 36 36 H 1.08000 * 120.00204 * 179.97438 * 27 26 25 37 37 H 1.08002 * 119.99797 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5626 2.0082 -1.3980 5 1 1.4152 2.6708 0.6330 6 1 3.5122 1.4601 0.7649 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0061 9 6 3.5115 -1.1941 -0.0065 10 1 3.8773 -0.3043 0.5061 11 8 3.9910 -2.3612 0.6643 12 6 4.1362 -2.2816 2.0140 13 6 4.7122 -3.3414 2.7129 14 6 4.8679 -3.2819 4.0679 15 6 4.4489 -2.1541 4.7696 16 7 4.4677 -1.8017 6.0956 17 1 4.8141 -2.3482 6.8183 18 7 3.9072 -0.5283 6.2381 19 6 3.5411 -0.0679 5.0754 20 17 2.7999 1.4723 4.7722 21 6 3.8657 -1.0788 4.0731 22 6 3.7180 -1.1509 2.6831 23 6 4.0071 -1.1934 -1.4297 24 6 4.4030 -0.0093 -2.0232 25 6 4.8582 -0.0089 -3.3284 26 6 4.9180 -1.1924 -4.0400 27 6 4.5231 -2.3767 -3.4462 28 6 4.0671 -2.3770 -2.1413 29 1 -0.4850 0.8401 0.0004 30 1 5.0391 -4.2197 2.1762 31 1 5.3162 -4.1103 4.5963 32 1 3.2763 -0.3289 2.1394 33 1 4.3567 0.9153 -1.4670 34 1 5.1679 0.9162 -3.7919 35 1 5.2693 -1.1914 -5.0613 36 1 4.5694 -3.3013 -4.0023 37 1 3.7581 -3.3022 -1.6775 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231127944.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:05 Heat of formation + Delta-G solvation = 59.905136 kcal Electronic energy + Delta-G solvation = -24792.734473 eV Core-core repulsion = 21141.114838 eV Total energy + Delta-G solvation = -3651.619636 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.38576 -40.72232 -39.49003 -38.01544 -37.05559 -35.02118 -33.22514 -32.92021 -31.70338 -31.09910 -29.56808 -29.09986 -25.29209 -24.11031 -23.55311 -23.10834 -22.61333 -21.74121 -19.51524 -19.15938 -18.64770 -17.79605 -17.39797 -16.71654 -16.51834 -16.27793 -16.07798 -15.53380 -15.45242 -15.17917 -14.91315 -14.88938 -14.46076 -14.18930 -13.81339 -13.68359 -13.40616 -13.32233 -13.02421 -12.91350 -12.58214 -12.38127 -12.30900 -11.95876 -11.89449 -11.70990 -11.44896 -11.28063 -10.93064 -10.87250 -9.72278 -9.70639 -9.46612 -8.56721 -8.44958 -6.51351 -0.26794 0.30751 0.49157 0.56161 0.61793 1.11610 1.19076 1.20651 1.27731 1.90234 2.15622 2.50565 2.71773 2.88294 3.08828 3.35363 3.63594 3.93533 4.05211 4.12457 4.19093 4.24116 4.30939 4.34195 4.46348 4.62714 4.80080 4.81263 4.85900 5.08462 5.12774 5.15382 5.25838 5.28899 5.36188 5.61177 5.66470 5.71236 5.85329 6.02223 6.13150 6.23124 6.41672 6.48230 6.71880 7.15692 8.70937 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.013082 B = 0.004918 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.772720 B = 5692.055612 C = 6993.279758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.043 3.957 3 Si 0.893 3.107 4 H -0.245 1.245 5 H -0.281 1.281 6 H -0.241 1.241 7 C -0.525 4.525 8 H 0.042 0.958 9 C 0.218 3.782 10 H 0.043 0.957 11 O -0.317 6.317 12 C 0.102 3.898 13 C -0.090 4.090 14 C -0.083 4.083 15 C 0.097 3.903 16 N -0.473 5.473 17 H 0.463 0.537 18 N -0.236 5.236 19 C 0.116 3.884 20 Cl 0.014 6.986 21 C -0.152 4.152 22 C -0.158 4.158 23 C -0.073 4.073 24 C -0.154 4.154 25 C -0.121 4.121 26 C -0.131 4.131 27 C -0.119 4.119 28 C -0.115 4.115 29 H 0.271 0.729 30 H 0.168 0.832 31 H 0.188 0.812 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.145 0.855 35 H 0.155 0.845 36 H 0.149 0.851 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.824 -4.183 4.226 15.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.158 4.158 3 Si 0.717 3.283 4 H -0.169 1.169 5 H -0.207 1.207 6 H -0.165 1.165 7 C -0.563 4.563 8 H 0.061 0.939 9 C 0.163 3.837 10 H 0.061 0.939 11 O -0.231 6.231 12 C 0.055 3.945 13 C -0.111 4.111 14 C -0.104 4.104 15 C -0.018 4.018 16 N -0.197 5.197 17 H 0.313 0.687 18 N -0.057 5.057 19 C -0.085 4.085 20 Cl 0.041 6.959 21 C -0.160 4.160 22 C -0.180 4.180 23 C -0.073 4.073 24 C -0.172 4.172 25 C -0.139 4.139 26 C -0.149 4.149 27 C -0.137 4.137 28 C -0.133 4.133 29 H 0.080 0.920 30 H 0.186 0.814 31 H 0.205 0.795 32 H 0.132 0.868 33 H 0.121 0.879 34 H 0.163 0.837 35 H 0.173 0.827 36 H 0.166 0.834 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 13.681 -3.852 5.306 15.171 hybrid contribution -0.840 1.196 -0.296 1.491 sum 12.842 -2.656 5.010 14.038 Atomic orbital electron populations 1.69980 1.07736 1.28309 1.50263 1.25504 0.95271 1.01714 0.93308 0.86656 0.80195 0.80666 0.80790 1.16891 1.20687 1.16519 1.21246 0.89830 0.93712 1.51465 0.93939 1.19292 0.92513 0.84419 0.87515 0.93917 1.85925 1.80678 1.40101 1.16405 1.19124 0.97002 0.94605 0.83747 1.20472 0.99197 0.97834 0.93584 1.20013 1.02092 0.96155 0.92171 1.18832 1.01574 0.96315 0.85093 1.45509 1.55278 1.12770 1.06098 0.68686 1.76345 1.13298 0.95932 1.20077 1.23762 1.02332 0.90832 0.91618 1.98397 1.79537 1.22983 1.94959 1.19377 1.08095 0.94965 0.93589 1.20714 1.04524 1.00024 0.92701 1.20154 0.96112 0.94724 0.96344 1.21059 1.01992 0.96699 0.97462 1.21329 0.99485 0.99829 0.93233 1.21434 1.00616 0.91876 1.00941 1.21466 0.98432 0.99665 0.94115 1.21008 0.99660 0.97372 0.95255 0.91983 0.81415 0.79505 0.86811 0.87912 0.83717 0.82702 0.83355 0.86682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.63 13.96 21.45 0.30 -56.33 16 2 C 0.04 2.46 5.47 84.65 0.46 2.92 16 3 Si 0.89 42.55 23.68 68.60 1.62 44.17 16 4 H -0.24 -10.90 6.70 99.48 0.67 -10.23 16 5 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.24 -10.77 5.82 99.48 0.58 -10.19 16 7 C -0.53 -29.69 8.44 25.60 0.22 -29.47 16 8 H 0.04 2.72 8.06 -2.91 -0.02 2.69 16 9 C 0.22 10.40 1.54 29.10 0.04 10.45 16 10 H 0.04 2.08 3.32 -2.38 -0.01 2.08 16 11 O -0.32 -13.99 9.05 -93.33 -0.84 -14.84 16 12 C 0.10 4.02 6.61 22.46 0.15 4.17 16 13 C -0.09 -2.54 9.90 22.15 0.22 -2.32 16 14 C -0.08 -1.87 10.01 22.12 0.22 -1.65 16 15 C 0.10 2.73 7.33 39.17 0.29 3.01 16 16 N -0.47 -11.39 7.38 -51.47 -0.38 -11.77 16 17 H 0.46 6.70 8.96 -213.47 -1.91 4.78 16 18 N -0.24 -7.30 12.55 -45.94 -0.58 -7.88 16 19 C 0.12 4.12 8.09 86.93 0.70 4.82 16 20 Cl 0.01 0.47 29.33 -2.72 -0.08 0.39 16 21 C -0.15 -5.62 6.36 -20.23 -0.13 -5.75 16 22 C -0.16 -6.69 8.80 22.61 0.20 -6.49 16 23 C -0.07 -3.15 4.90 -19.86 -0.10 -3.25 16 24 C -0.15 -6.06 8.68 22.27 0.19 -5.87 16 25 C -0.12 -3.79 10.05 22.27 0.22 -3.56 16 26 C -0.13 -3.61 10.05 22.27 0.22 -3.38 16 27 C -0.12 -3.60 10.05 22.27 0.22 -3.38 16 28 C -0.11 -4.42 9.36 22.27 0.21 -4.21 16 29 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 30 H 0.17 3.67 8.06 -2.91 -0.02 3.64 16 31 H 0.19 2.18 8.06 -2.91 -0.02 2.16 16 32 H 0.11 5.47 4.58 -2.91 -0.01 5.46 16 33 H 0.10 4.07 5.26 -2.91 -0.02 4.06 16 34 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 35 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 36 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 37 H 0.12 4.47 7.73 -2.91 -0.02 4.45 16 Total: -1.00 -71.70 327.70 2.46 -69.24 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -0.93 Total: 20.97 kcal Atomic # 6 Polarization: -47.30 SS G_CDS: 3.35 Total: -43.95 kcal Atomic # 7 Polarization: -75.32 SS G_CDS: -0.66 Total: -75.98 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.84 Total: -14.84 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 1.62 Total: 44.17 kcal Atomic # 17 Polarization: 0.47 SS G_CDS: -0.08 Total: 0.39 kcal Total: -71.70 2.46 -69.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231127944.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.141 kcal (2) G-P(sol) polarization free energy of solvation -71.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds