Wall clock time and date at job start Tue Mar 31 2020 15:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99757 * 2 1 4 4 H 1.48504 * 109.47275 * 274.99675 * 3 2 1 5 5 H 1.48504 * 109.47121 * 34.99402 * 3 2 1 6 6 H 1.48504 * 109.47207 * 154.99341 * 3 2 1 7 7 C 1.37879 * 120.00581 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00088 * 185.71095 * 7 2 1 9 9 C 1.50699 * 119.99563 * 5.71376 * 7 2 1 10 10 H 1.09004 * 109.46923 * 304.92829 * 9 7 2 11 11 C 1.52995 * 109.47306 * 64.92727 * 9 7 2 12 12 Cl 1.80305 * 109.47215 * 185.22648 * 11 9 7 13 13 O 1.42902 * 109.46973 * 184.92907 * 9 7 2 14 14 C 1.35610 * 117.00113 * 147.07869 * 13 9 7 15 15 C 1.38585 * 120.98909 * 355.95601 * 14 13 9 16 16 C 1.38651 * 119.65381 * 179.97438 * 15 14 13 17 17 N 1.31513 * 121.58481 * 0.13105 * 16 15 14 18 18 C 1.33011 * 121.67430 * 359.90795 * 17 16 15 19 19 C 1.41059 * 120.99027 * 175.98048 * 14 13 9 20 20 C 1.41161 * 120.99487 * 359.95664 * 19 14 13 21 21 C 1.34963 * 121.29760 * 180.02562 * 20 19 14 22 22 C 1.41263 * 121.24102 * 0.02562 * 21 20 19 23 23 C 1.40512 * 121.02702 * 179.97438 * 22 21 20 24 24 C 1.36821 * 118.24423 * 180.02562 * 23 22 21 25 25 C 1.39026 * 119.87367 * 359.97438 * 24 23 22 26 26 N 1.31381 * 121.52077 * 0.02562 * 25 24 23 27 27 C 1.32966 * 121.35727 * 359.93359 * 26 25 24 28 28 H 0.96996 * 120.00504 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47278 * 305.22261 * 11 9 7 30 30 H 1.09001 * 109.47255 * 65.22765 * 11 9 7 31 31 H 1.07998 * 120.17428 * 0.02562 * 15 14 13 32 32 H 1.07996 * 119.20622 * 180.02562 * 16 15 14 33 33 H 1.08001 * 119.34814 * 0.05062 * 20 19 14 34 34 H 1.07996 * 119.38231 * 179.97438 * 21 20 19 35 35 H 1.08005 * 120.88167 * 359.97438 * 23 22 21 36 36 H 1.08000 * 120.06896 * 180.02562 * 24 23 22 37 37 H 1.07999 * 119.23889 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.3909 2.1075 -1.3948 5 1 1.5032 2.6199 0.8029 6 1 3.5954 1.4121 0.5919 7 6 2.0046 -1.1940 0.0005 8 1 3.0805 -1.1962 0.0936 9 6 1.2568 -2.4959 -0.1288 10 1 0.4955 -2.5565 0.6490 11 6 0.5882 -2.5657 -1.5032 12 17 -0.4307 -4.0500 -1.6013 13 8 2.1700 -3.5859 0.0126 14 6 1.6954 -4.7154 0.5939 15 6 0.4072 -4.7692 1.1021 16 6 -0.0500 -5.9385 1.6903 17 7 0.7118 -7.0066 1.7826 18 6 1.9570 -7.0189 1.3151 19 6 2.4982 -5.8704 0.6997 20 6 3.8194 -5.8853 0.2029 21 6 4.5928 -6.9871 0.3004 22 6 4.1102 -8.1699 0.9034 23 6 4.9190 -9.3146 1.0021 24 6 4.3937 -10.4293 1.5966 25 6 3.0916 -10.4061 2.0832 26 7 2.3415 -9.3317 1.9872 27 6 2.7968 -8.2183 1.4207 28 1 -0.4851 0.8400 -0.0004 29 1 -0.0377 -1.6852 -1.6480 30 1 1.3538 -2.5988 -2.2784 31 1 -0.2375 -3.9050 1.0397 32 1 -1.0552 -5.9726 2.0837 33 1 4.2194 -4.9974 -0.2641 34 1 5.5992 -6.9643 -0.0907 35 1 5.9285 -9.3148 0.6180 36 1 4.9896 -11.3253 1.6884 37 1 2.6874 -11.2916 2.5510 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234086331.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:27 Heat of formation + Delta-G solvation = 28.031428 kcal Electronic energy + Delta-G solvation = -24586.742557 eV Core-core repulsion = 20933.740774 eV Total energy + Delta-G solvation = -3653.001783 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.98416 -39.63418 -37.79102 -35.87751 -35.06379 -33.65332 -32.93280 -31.58425 -29.96701 -29.64381 -28.98882 -25.46967 -24.65906 -24.05853 -23.14148 -22.26888 -20.75267 -19.16124 -18.01596 -17.45744 -16.67947 -16.38281 -16.07953 -15.38561 -15.11764 -14.80583 -14.36131 -14.20663 -13.83055 -13.75441 -13.44019 -13.29417 -13.07176 -12.95446 -12.74095 -12.31063 -12.05796 -11.63124 -11.44083 -11.26642 -11.19971 -11.11462 -10.87896 -10.37631 -10.15396 -9.96000 -9.63972 -9.52290 -9.38032 -9.13451 -8.90272 -8.78071 -8.25910 -7.45723 -6.57399 -4.65389 0.43792 0.62981 1.62251 2.04018 2.86796 3.02829 3.13026 3.16257 3.20088 3.63176 3.75881 4.06417 4.24711 4.46346 4.49548 4.69032 4.79149 4.89950 4.96988 5.01714 5.10515 5.23422 5.30732 5.40523 5.57920 5.84393 5.86554 5.92388 6.00233 6.03763 6.05968 6.23560 6.37756 6.48235 6.52115 6.66257 6.71110 6.88781 7.00316 7.38986 7.55675 7.96757 7.99811 8.38541 8.49113 9.02705 10.50638 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.019349 B = 0.003518 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.787469 B = 7956.120847 C = 8649.308419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.068 3.932 3 Si 0.915 3.085 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.528 4.528 8 H 0.078 0.922 9 C 0.203 3.797 10 H 0.061 0.939 11 C -0.033 4.033 12 Cl -0.234 7.234 13 O -0.296 6.296 14 C 0.217 3.783 15 C -0.253 4.253 16 C 0.152 3.848 17 N -0.488 5.488 18 C 0.192 3.808 19 C -0.135 4.135 20 C -0.047 4.047 21 C -0.143 4.143 22 C -0.073 4.073 23 C -0.072 4.072 24 C -0.169 4.169 25 C 0.099 3.901 26 N -0.439 5.439 27 C 0.153 3.847 28 H 0.273 0.727 29 H 0.122 0.878 30 H 0.079 0.921 31 H 0.153 0.847 32 H 0.157 0.843 33 H 0.137 0.863 34 H 0.129 0.871 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.421 -12.662 0.538 14.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.137 4.137 3 Si 0.741 3.259 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.566 4.566 8 H 0.096 0.904 9 C 0.148 3.852 10 H 0.079 0.921 11 C -0.095 4.095 12 Cl -0.208 7.208 13 O -0.205 6.205 14 C 0.161 3.839 15 C -0.274 4.274 16 C -0.010 4.010 17 N -0.201 5.201 18 C 0.061 3.939 19 C -0.140 4.140 20 C -0.066 4.066 21 C -0.161 4.161 22 C -0.076 4.076 23 C -0.098 4.098 24 C -0.189 4.189 25 C -0.067 4.067 26 N -0.147 5.147 27 C 0.023 3.977 28 H 0.083 0.917 29 H 0.140 0.860 30 H 0.098 0.902 31 H 0.170 0.830 32 H 0.174 0.826 33 H 0.155 0.845 34 H 0.147 0.853 35 H 0.156 0.844 36 H 0.152 0.848 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 5.195 -13.243 1.130 14.271 hybrid contribution 1.187 1.732 -0.826 2.256 sum 6.382 -11.512 0.303 13.166 Atomic orbital electron populations 1.69894 1.06029 1.28396 1.47503 1.24988 0.95156 0.99861 0.93715 0.86180 0.79845 0.81362 0.78492 1.20091 1.20661 1.19273 1.20935 0.94872 0.87744 1.53012 0.90384 1.20711 0.89275 0.82398 0.92789 0.92139 1.25671 0.95054 0.86962 1.01849 1.98662 1.75315 1.47970 1.98900 1.86066 1.42115 1.20655 1.71702 1.19307 0.90977 0.86514 0.87136 1.22445 0.97177 1.02139 1.05645 1.22621 0.98708 0.87176 0.92463 1.67739 1.04094 1.28603 1.19634 1.19059 0.90527 0.89927 0.94410 1.18131 0.96207 0.92851 1.06776 1.20783 0.91825 0.98546 0.95433 1.20552 1.00483 0.92076 1.03018 1.18799 0.94062 0.95516 0.99187 1.21395 0.99564 0.91827 0.97004 1.21878 0.97383 0.99399 1.00208 1.22915 0.90790 0.96287 0.96755 1.67751 1.35943 0.98539 1.12443 1.19303 0.90292 0.91384 0.96697 0.91662 0.85992 0.90244 0.82975 0.82565 0.84507 0.85324 0.84417 0.84770 0.82610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.91 11.94 55.43 0.66 -21.25 16 2 C 0.07 1.63 5.22 -17.82 -0.09 1.54 16 3 Si 0.92 18.97 29.54 -169.99 -5.02 13.95 16 4 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.53 -12.89 8.82 -34.44 -0.30 -13.20 16 8 H 0.08 1.92 7.82 -52.49 -0.41 1.51 16 9 C 0.20 4.56 2.07 -27.89 -0.06 4.51 16 10 H 0.06 1.45 5.44 -51.93 -0.28 1.16 16 11 C -0.03 -0.69 6.22 37.15 0.23 -0.45 16 12 Cl -0.23 -4.57 25.68 -51.86 -1.33 -5.91 16 13 O -0.30 -6.31 8.98 -18.53 -0.17 -6.48 16 14 C 0.22 4.31 5.99 -38.38 -0.23 4.08 16 15 C -0.25 -4.77 7.14 -39.30 -0.28 -5.05 16 16 C 0.15 2.66 11.14 -17.54 -0.20 2.46 16 17 N -0.49 -9.36 10.18 -9.68 -0.10 -9.46 16 18 C 0.19 3.65 6.79 -82.81 -0.56 3.09 16 19 C -0.14 -2.52 5.76 -106.63 -0.61 -3.14 16 20 C -0.05 -0.76 9.48 -39.64 -0.38 -1.14 16 21 C -0.14 -1.94 9.66 -39.60 -0.38 -2.32 16 22 C -0.07 -1.04 5.75 -106.75 -0.61 -1.65 16 23 C -0.07 -0.78 9.88 -39.24 -0.39 -1.17 16 24 C -0.17 -1.65 10.03 -39.80 -0.40 -2.05 16 25 C 0.10 1.18 11.15 -17.45 -0.19 0.99 16 26 N -0.44 -7.20 10.20 -9.58 -0.10 -7.30 16 27 C 0.15 2.64 6.79 -82.78 -0.56 2.08 16 28 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 29 H 0.12 2.74 6.60 -51.93 -0.34 2.40 16 30 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 31 H 0.15 2.94 5.26 -52.49 -0.28 2.67 16 32 H 0.16 2.23 8.06 -52.49 -0.42 1.81 16 33 H 0.14 2.10 7.60 -52.49 -0.40 1.70 16 34 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 35 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 36 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.16 1.35 8.06 -52.49 -0.42 0.92 16 LS Contribution 329.20 15.07 4.96 4.96 Total: -1.00 -27.86 329.20 -9.50 -37.35 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -3.38 Total: 5.57 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -5.02 Total: -11.44 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.47 Total: -38.00 kcal Atomic # 8 Polarization: -6.31 SS G_CDS: -0.17 Total: -6.48 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.02 Total: 13.95 kcal Atomic # 17 Polarization: -4.57 SS G_CDS: -1.33 Total: -5.91 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.86 -9.50 -37.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234086331.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.384 kcal (2) G-P(sol) polarization free energy of solvation -27.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds