Wall clock time and date at job start Tue Mar 31 2020 15:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99757 * 2 1 4 4 H 1.48504 * 109.47275 * 274.99675 * 3 2 1 5 5 H 1.48504 * 109.47121 * 34.99402 * 3 2 1 6 6 H 1.48504 * 109.47207 * 154.99341 * 3 2 1 7 7 C 1.37879 * 120.00581 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00088 * 185.71095 * 7 2 1 9 9 C 1.50699 * 119.99563 * 5.71376 * 7 2 1 10 10 H 1.09004 * 109.46923 * 304.92829 * 9 7 2 11 11 C 1.52995 * 109.47306 * 64.92727 * 9 7 2 12 12 Cl 1.80305 * 109.47215 * 185.22648 * 11 9 7 13 13 O 1.42902 * 109.46973 * 184.92907 * 9 7 2 14 14 C 1.35610 * 117.00113 * 147.07869 * 13 9 7 15 15 C 1.38585 * 120.98909 * 355.95601 * 14 13 9 16 16 C 1.38651 * 119.65381 * 179.97438 * 15 14 13 17 17 N 1.31513 * 121.58481 * 0.13105 * 16 15 14 18 18 C 1.33011 * 121.67430 * 359.90795 * 17 16 15 19 19 C 1.41059 * 120.99027 * 175.98048 * 14 13 9 20 20 C 1.41161 * 120.99487 * 359.95664 * 19 14 13 21 21 C 1.34963 * 121.29760 * 180.02562 * 20 19 14 22 22 C 1.41263 * 121.24102 * 0.02562 * 21 20 19 23 23 C 1.40512 * 121.02702 * 179.97438 * 22 21 20 24 24 C 1.36821 * 118.24423 * 180.02562 * 23 22 21 25 25 C 1.39026 * 119.87367 * 359.97438 * 24 23 22 26 26 N 1.31381 * 121.52077 * 0.02562 * 25 24 23 27 27 C 1.32966 * 121.35727 * 359.93359 * 26 25 24 28 28 H 0.96996 * 120.00504 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47278 * 305.22261 * 11 9 7 30 30 H 1.09001 * 109.47255 * 65.22765 * 11 9 7 31 31 H 1.07998 * 120.17428 * 0.02562 * 15 14 13 32 32 H 1.07996 * 119.20622 * 180.02562 * 16 15 14 33 33 H 1.08001 * 119.34814 * 0.05062 * 20 19 14 34 34 H 1.07996 * 119.38231 * 179.97438 * 21 20 19 35 35 H 1.08005 * 120.88167 * 359.97438 * 23 22 21 36 36 H 1.08000 * 120.06896 * 180.02562 * 24 23 22 37 37 H 1.07999 * 119.23889 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.3909 2.1075 -1.3948 5 1 1.5032 2.6199 0.8029 6 1 3.5954 1.4121 0.5919 7 6 2.0046 -1.1940 0.0005 8 1 3.0805 -1.1962 0.0936 9 6 1.2568 -2.4959 -0.1288 10 1 0.4955 -2.5565 0.6490 11 6 0.5882 -2.5657 -1.5032 12 17 -0.4307 -4.0500 -1.6013 13 8 2.1700 -3.5859 0.0126 14 6 1.6954 -4.7154 0.5939 15 6 0.4072 -4.7692 1.1021 16 6 -0.0500 -5.9385 1.6903 17 7 0.7118 -7.0066 1.7826 18 6 1.9570 -7.0189 1.3151 19 6 2.4982 -5.8704 0.6997 20 6 3.8194 -5.8853 0.2029 21 6 4.5928 -6.9871 0.3004 22 6 4.1102 -8.1699 0.9034 23 6 4.9190 -9.3146 1.0021 24 6 4.3937 -10.4293 1.5966 25 6 3.0916 -10.4061 2.0832 26 7 2.3415 -9.3317 1.9872 27 6 2.7968 -8.2183 1.4207 28 1 -0.4851 0.8400 -0.0004 29 1 -0.0377 -1.6852 -1.6480 30 1 1.3538 -2.5988 -2.2784 31 1 -0.2375 -3.9050 1.0397 32 1 -1.0552 -5.9726 2.0837 33 1 4.2194 -4.9974 -0.2641 34 1 5.5992 -6.9643 -0.0907 35 1 5.9285 -9.3148 0.6180 36 1 4.9896 -11.3253 1.6884 37 1 2.6874 -11.2916 2.5510 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234086331.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:26 Heat of formation + Delta-G solvation = 13.004844 kcal Electronic energy + Delta-G solvation = -24587.394159 eV Core-core repulsion = 20933.740774 eV Total energy + Delta-G solvation = -3653.653385 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.21182 -40.89402 -39.25756 -37.05817 -36.69737 -35.43798 -33.96422 -32.97240 -31.41336 -31.00178 -30.28193 -27.30095 -25.89351 -25.22582 -24.31155 -23.71780 -22.19420 -20.33409 -19.41642 -19.00684 -18.11719 -17.59180 -17.23846 -16.81902 -16.61264 -16.24683 -15.71632 -15.50688 -15.24982 -15.15927 -14.66148 -14.52213 -14.37522 -14.22199 -13.96786 -13.81143 -13.56254 -13.08405 -12.95593 -12.76578 -12.65858 -12.43461 -12.38561 -12.00581 -11.66788 -11.34041 -11.22547 -11.08987 -10.68173 -10.51938 -10.37523 -10.14225 -9.53328 -8.76739 -8.41558 -6.56736 -0.69822 -0.53657 0.46820 0.79092 1.36953 1.43305 1.51174 1.54864 1.71753 2.09647 2.42144 2.60106 2.93461 3.00936 3.25194 3.39238 3.68538 3.76586 3.84681 3.93050 3.99989 4.10209 4.15901 4.21902 4.28645 4.37052 4.53294 4.66495 4.72923 4.76044 4.92671 4.94585 5.09620 5.13199 5.25847 5.39275 5.43549 5.52723 5.59291 5.74666 5.85299 6.32691 6.64931 6.86294 7.11793 7.15121 8.66266 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.019349 B = 0.003518 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.787469 B = 7956.120847 C = 8649.308419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.031 3.969 3 Si 0.975 3.025 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.550 4.550 8 H 0.070 0.930 9 C 0.208 3.792 10 H 0.041 0.959 11 C -0.022 4.022 12 Cl -0.220 7.220 13 O -0.306 6.306 14 C 0.191 3.809 15 C -0.258 4.258 16 C 0.146 3.854 17 N -0.503 5.503 18 C 0.166 3.834 19 C -0.138 4.138 20 C -0.089 4.089 21 C -0.106 4.106 22 C -0.094 4.094 23 C -0.060 4.060 24 C -0.153 4.153 25 C 0.100 3.900 26 N -0.486 5.486 27 C 0.122 3.878 28 H 0.276 0.724 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.142 0.858 32 H 0.184 0.816 33 H 0.136 0.864 34 H 0.171 0.829 35 H 0.182 0.818 36 H 0.183 0.817 37 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.108 -15.117 0.403 17.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.172 4.172 3 Si 0.798 3.202 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.587 4.587 8 H 0.088 0.912 9 C 0.153 3.847 10 H 0.059 0.941 11 C -0.085 4.085 12 Cl -0.194 7.194 13 O -0.216 6.216 14 C 0.135 3.865 15 C -0.279 4.279 16 C -0.016 4.016 17 N -0.215 5.215 18 C 0.035 3.965 19 C -0.142 4.142 20 C -0.108 4.108 21 C -0.124 4.124 22 C -0.097 4.097 23 C -0.086 4.086 24 C -0.172 4.172 25 C -0.066 4.066 26 N -0.194 5.194 27 C -0.006 4.006 28 H 0.086 0.914 29 H 0.125 0.875 30 H 0.103 0.897 31 H 0.159 0.841 32 H 0.201 0.799 33 H 0.154 0.846 34 H 0.189 0.811 35 H 0.199 0.801 36 H 0.201 0.799 37 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 7.889 -15.720 0.991 17.617 hybrid contribution 0.458 2.123 -0.704 2.283 sum 8.347 -13.597 0.287 15.957 Atomic orbital electron populations 1.69976 1.07108 1.29186 1.47872 1.25698 0.95846 1.02525 0.93085 0.85273 0.78536 0.77646 0.78718 1.19252 1.20404 1.19242 1.21154 0.94716 0.89057 1.53772 0.91194 1.20455 0.88891 0.82500 0.92804 0.94122 1.25346 0.94970 0.86976 1.01230 1.98657 1.74887 1.47002 1.98875 1.86011 1.41917 1.20977 1.72697 1.19527 0.91884 0.86572 0.88476 1.22385 0.96934 1.02232 1.06353 1.22987 0.99735 0.86500 0.92390 1.67775 1.04743 1.29000 1.20009 1.19534 0.90841 0.91184 0.94908 1.18365 0.97281 0.92166 1.06393 1.20828 0.91535 1.00064 0.98327 1.21015 1.01382 0.90527 0.99491 1.19115 0.93641 0.97243 0.99704 1.21930 1.00747 0.90316 0.95558 1.22395 0.96495 1.00720 0.97627 1.23647 0.91721 0.95797 0.95393 1.67694 1.37958 0.99558 1.14229 1.19417 0.91445 0.91292 0.98476 0.91433 0.87459 0.89681 0.84075 0.79930 0.84606 0.81134 0.80113 0.79935 0.79596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.10 11.94 21.45 0.26 -45.84 16 2 C 0.03 1.52 5.22 84.66 0.44 1.96 16 3 Si 0.97 39.20 29.54 68.60 2.03 41.23 16 4 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 5 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 7 C -0.55 -27.82 8.82 25.60 0.23 -27.60 16 8 H 0.07 3.56 7.82 -2.91 -0.02 3.54 16 9 C 0.21 9.87 2.07 29.85 0.06 9.94 16 10 H 0.04 2.09 5.44 -2.38 -0.01 2.07 16 11 C -0.02 -0.97 6.22 71.98 0.45 -0.53 16 12 Cl -0.22 -8.88 25.68 -2.72 -0.07 -8.95 16 13 O -0.31 -13.80 8.98 -89.21 -0.80 -14.60 16 14 C 0.19 8.03 5.99 23.04 0.14 8.16 16 15 C -0.26 -10.36 7.14 22.45 0.16 -10.20 16 16 C 0.15 5.39 11.14 84.84 0.95 6.34 16 17 N -0.50 -20.08 10.18 -184.52 -1.88 -21.96 16 18 C 0.17 6.51 6.79 41.91 0.28 6.79 16 19 C -0.14 -5.37 5.76 -21.17 -0.12 -5.50 16 20 C -0.09 -2.89 9.48 22.23 0.21 -2.67 16 21 C -0.11 -2.65 9.66 22.26 0.21 -2.44 16 22 C -0.09 -2.46 5.75 -21.24 -0.12 -2.58 16 23 C -0.06 -0.99 9.88 22.49 0.22 -0.77 16 24 C -0.15 -2.16 10.03 22.13 0.22 -1.94 16 25 C 0.10 2.07 11.15 84.95 0.95 3.01 16 26 N -0.49 -15.43 10.20 -184.23 -1.88 -17.31 16 27 C 0.12 4.16 6.79 41.95 0.29 4.45 16 28 H 0.28 13.27 8.31 -92.71 -0.77 12.50 16 29 H 0.11 5.02 6.60 -2.39 -0.02 5.00 16 30 H 0.08 3.56 8.14 -2.39 -0.02 3.54 16 31 H 0.14 5.90 5.26 -2.91 -0.02 5.88 16 32 H 0.18 5.43 8.06 -2.91 -0.02 5.40 16 33 H 0.14 4.29 7.60 -2.91 -0.02 4.27 16 34 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 35 H 0.18 1.42 8.06 -2.91 -0.02 1.40 16 36 H 0.18 0.88 8.06 -2.91 -0.02 0.86 16 37 H 0.19 2.48 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -64.68 329.20 3.34 -61.34 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 1.12 Total: 19.66 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: 4.56 Total: -13.56 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -3.50 Total: -85.12 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.80 Total: -14.60 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Atomic # 17 Polarization: -8.88 SS G_CDS: -0.07 Total: -8.95 kcal Total: -64.68 3.34 -61.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234086331.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.341 kcal (2) G-P(sol) polarization free energy of solvation -64.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds