Wall clock time and date at job start Tue Mar 31 2020 15:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42103 * 110.54387 * 2 1 4 4 O 1.42105 * 110.54204 * 223.25180 * 2 1 3 5 5 C 1.76196 * 104.45192 * 111.62601 * 2 1 3 6 6 C 1.38381 * 120.34773 * 270.02131 * 5 2 1 7 7 N 1.31924 * 121.07610 * 179.97438 * 6 5 2 8 8 C 1.31696 * 121.87832 * 359.75482 * 7 6 5 9 9 C 1.39552 * 120.55825 * 0.53048 * 8 7 6 10 10 C 1.48039 * 120.55349 * 179.72495 * 9 8 7 11 11 C 1.39975 * 119.49361 * 179.72581 * 10 9 8 12 12 C 1.36018 * 121.18801 * 180.02562 * 11 10 9 13 13 C 1.41035 * 120.10902 * 0.02562 * 12 11 10 14 14 C 1.40458 * 120.48930 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99628 * 208.74716 * 14 13 12 16 16 C 1.40311 * 119.99912 * 28.74176 * 14 13 12 17 17 N 1.30626 * 119.99882 * 197.54004 * 16 14 13 18 18 Si 1.86794 * 119.99967 * 17.54654 * 16 14 13 19 19 H 1.48496 * 109.47250 * 269.99829 * 18 16 14 20 20 H 1.48499 * 109.47231 * 29.99653 * 18 16 14 21 21 H 1.48498 * 109.47257 * 149.99578 * 18 16 14 22 22 C 1.46634 * 119.02361 * 0.23219 * 13 12 11 23 23 C 1.43196 * 120.57178 * 179.74858 * 22 13 12 24 24 N 9.96108 * 103.45884 * 132.02803 * 2 1 3 25 25 C 1.39103 * 118.86510 * 359.48578 * 22 13 12 26 26 C 1.38339 * 120.34672 * 89.99552 * 5 2 1 27 27 H 1.08998 * 109.46930 * 308.37145 * 1 2 3 28 28 H 1.09001 * 109.47122 * 68.37350 * 1 2 3 29 29 H 1.08994 * 109.47220 * 188.37580 * 1 2 3 30 30 H 1.08001 * 119.45844 * 359.97438 * 6 5 2 31 31 H 1.07999 * 119.71897 * 180.26744 * 8 7 6 32 32 H 1.07994 * 119.40235 * 0.04740 * 11 10 9 33 33 H 1.08001 * 119.94472 * 180.02562 * 12 11 10 34 34 H 0.96996 * 120.00064 * 355.45608 * 17 16 14 35 35 H 1.07999 * 120.09430 * 180.24588 * 25 22 13 36 36 H 1.07997 * 120.85541 * 0.02562 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9118 5 6 2.2537 -0.6288 1.5861 6 6 2.4278 0.2318 2.6557 7 7 2.7565 -0.2235 3.8495 8 6 2.9289 -1.5085 4.0806 9 6 2.7777 -2.4407 3.0532 10 6 2.9774 -3.8846 3.3117 11 6 2.8145 -4.8009 2.2662 12 6 2.9890 -6.1351 2.4652 13 6 3.3399 -6.6199 3.7423 14 6 3.5216 -7.9961 3.9569 15 1 3.3301 -8.4204 4.9314 16 6 3.9516 -8.8194 2.9053 17 7 3.7976 -10.1141 2.9845 18 14 4.7446 -8.0640 1.3921 19 1 3.6963 -7.7509 0.3880 20 1 5.4519 -6.8156 1.7748 21 1 5.7160 -9.0248 0.8104 22 6 3.5069 -5.6667 4.8440 23 6 3.8575 -6.1232 6.1551 24 7 4.1324 -6.4857 7.1961 25 6 3.3242 -4.3109 4.5924 26 6 2.4281 -1.9881 1.7753 27 1 -0.3633 0.6379 0.8057 28 1 -0.3633 0.3788 -0.9553 29 1 -0.3633 -1.0166 0.1497 30 1 2.2923 1.2934 2.5108 31 1 3.1936 -1.8433 5.0727 32 1 2.5458 -4.4420 1.2837 33 1 2.8585 -6.8243 1.6440 34 1 3.4469 -10.5120 3.7966 35 1 3.4460 -3.5912 5.3883 36 1 2.2986 -2.6822 0.9581 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239700548.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:52 Heat of formation + Delta-G solvation = 6.083901 kcal Electronic energy + Delta-G solvation = -23896.213331 eV Core-core repulsion = 20244.303538 eV Total energy + Delta-G solvation = -3651.909793 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.14887 -38.16934 -37.26200 -36.10755 -35.51325 -34.67111 -32.84911 -32.25732 -30.54906 -29.79616 -29.57413 -25.86324 -24.46155 -23.09070 -22.17338 -21.32304 -19.23216 -18.75008 -18.19739 -17.18141 -16.62783 -16.61062 -16.34832 -15.51702 -15.26230 -14.65693 -14.44818 -14.02800 -13.99293 -13.57405 -13.49201 -13.37852 -13.32167 -12.97440 -12.79773 -12.51045 -12.25619 -12.21316 -12.12222 -11.95326 -11.69892 -11.53522 -11.29531 -11.18224 -10.85575 -10.74605 -10.34068 -10.12618 -9.95745 -9.75077 -9.40218 -9.24995 -8.26732 -8.08490 -7.64804 -5.14751 -0.14761 0.63876 1.07048 1.76946 2.31174 2.67197 2.88987 3.05429 3.23473 3.46620 3.57257 3.59978 3.73216 3.90763 4.01080 4.20469 4.43627 4.48942 4.57971 4.83368 4.89303 4.95437 4.96981 5.08470 5.30892 5.34147 5.47749 5.64116 5.73824 5.88373 6.00337 6.24752 6.28919 6.58953 6.70336 6.84834 6.97554 7.07949 7.22663 7.32229 7.72190 7.81614 7.89774 8.05922 8.46865 9.33421 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.015643 B = 0.003542 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.454220 B = 7902.869761 C = 9305.249808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.507 3.493 3 O -0.939 6.939 4 O -0.936 6.936 5 C -0.700 4.700 6 C 0.149 3.851 7 N -0.484 5.484 8 C 0.119 3.881 9 C -0.041 4.041 10 C -0.217 4.217 11 C -0.026 4.026 12 C -0.238 4.238 13 C 0.130 3.870 14 C -0.449 4.449 15 H 0.088 0.912 16 C 0.038 3.962 17 N -0.763 5.763 18 Si 1.070 2.930 19 H -0.266 1.266 20 H -0.253 1.253 21 H -0.281 1.281 22 C -0.171 4.171 23 C 0.293 3.707 24 N -0.491 5.491 25 C 0.014 3.986 26 C -0.011 4.011 27 H 0.132 0.868 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.165 0.835 31 H 0.161 0.839 32 H 0.107 0.893 33 H 0.119 0.881 34 H 0.297 0.703 35 H 0.110 0.890 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.882 13.798 -7.817 17.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.686 3.314 3 O -0.936 6.936 4 O -0.933 6.933 5 C -0.788 4.788 6 C -0.010 4.010 7 N -0.192 5.192 8 C -0.038 4.038 9 C -0.044 4.044 10 C -0.219 4.219 11 C -0.045 4.045 12 C -0.256 4.256 13 C 0.124 3.876 14 C -0.475 4.475 15 H 0.106 0.894 16 C -0.188 4.188 17 N -0.381 5.381 18 Si 0.893 3.107 19 H -0.192 1.192 20 H -0.177 1.177 21 H -0.208 1.208 22 C -0.176 4.176 23 C -0.017 4.017 24 N -0.169 5.169 25 C -0.007 4.007 26 C -0.037 4.037 27 H 0.150 0.850 28 H 0.149 0.851 29 H 0.152 0.848 30 H 0.182 0.818 31 H 0.178 0.822 32 H 0.125 0.875 33 H 0.137 0.863 34 H 0.109 0.891 35 H 0.127 0.873 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.189 13.549 -7.546 16.354 hybrid contribution -1.466 -0.693 1.363 2.119 sum -6.655 12.856 -6.183 15.741 Atomic orbital electron populations 1.30222 1.25807 1.12252 1.11712 1.04997 0.77758 0.74556 0.74125 1.93578 1.77363 1.36554 1.86129 1.93597 1.77232 1.61551 1.60874 1.31287 1.20402 1.03814 1.23314 1.22360 0.92423 0.99315 0.86881 1.67660 1.12067 1.16499 1.22994 1.23208 0.93455 0.87746 0.99388 1.19908 0.96471 0.94683 0.93368 1.17493 1.20498 0.89316 0.94554 1.20460 0.94373 0.92860 0.96759 1.20774 1.11945 0.95349 0.97567 1.18573 0.87150 0.91977 0.89931 1.21096 1.33450 0.92923 1.00003 0.89372 1.27825 0.93348 0.94160 1.03500 1.70440 1.26170 1.12512 1.29006 0.83631 0.77342 0.76487 0.73203 1.19197 1.17651 1.20761 1.16694 1.20788 0.92563 0.87562 1.25635 0.91738 0.92098 0.92258 1.81073 1.13925 1.09076 1.12850 1.20675 0.91952 0.93162 0.94873 1.21370 0.91945 0.92973 0.97419 0.84982 0.85074 0.84836 0.81808 0.82205 0.87466 0.86313 0.89073 0.87252 0.83157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.22 10.80 101.05 1.09 -2.13 16 2 S 2.51 23.32 5.81 -107.50 -0.62 22.69 16 3 O -0.94 -11.20 17.14 -57.54 -0.99 -12.18 16 4 O -0.94 -11.84 17.19 -57.54 -0.99 -12.83 16 5 C -0.70 -8.21 5.67 -39.49 -0.22 -8.43 16 6 C 0.15 1.86 10.63 -17.46 -0.19 1.67 16 7 N -0.48 -6.94 10.35 -12.89 -0.13 -7.07 16 8 C 0.12 1.70 10.59 -17.12 -0.18 1.52 16 9 C -0.04 -0.62 5.90 -104.73 -0.62 -1.23 16 10 C -0.22 -3.62 5.88 -104.81 -0.62 -4.24 16 11 C -0.03 -0.44 9.31 -39.73 -0.37 -0.81 16 12 C -0.24 -4.56 7.21 -39.32 -0.28 -4.84 16 13 C 0.13 2.75 5.30 -104.61 -0.55 2.20 16 14 C -0.45 -10.25 8.90 -37.97 -0.34 -10.58 16 15 H 0.09 2.16 7.61 -52.49 -0.40 1.76 16 16 C 0.04 0.83 5.42 -17.29 -0.09 0.74 16 17 N -0.76 -17.44 13.64 55.57 0.76 -16.68 16 18 Si 1.07 20.15 24.90 -169.99 -4.23 15.92 16 19 H -0.27 -4.58 6.44 56.52 0.36 -4.21 16 20 H -0.25 -4.72 7.02 56.52 0.40 -4.32 16 21 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 22 C -0.17 -3.45 5.93 -104.27 -0.62 -4.07 16 23 C 0.29 6.28 14.34 -22.47 -0.32 5.96 16 24 N -0.49 -11.03 18.54 41.84 0.78 -10.26 16 25 C 0.01 0.25 9.13 -38.84 -0.35 -0.10 16 26 C -0.01 -0.15 8.94 -38.88 -0.35 -0.50 16 27 H 0.13 0.47 8.14 -51.92 -0.42 0.04 16 28 H 0.13 0.43 8.14 -51.92 -0.42 0.00 16 29 H 0.13 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.16 1.62 7.57 -52.49 -0.40 1.23 16 31 H 0.16 2.02 6.17 -52.49 -0.32 1.70 16 32 H 0.11 1.52 6.15 -52.49 -0.32 1.20 16 33 H 0.12 2.20 4.38 -52.49 -0.23 1.97 16 34 H 0.30 6.61 8.72 -40.82 -0.36 6.26 16 35 H 0.11 1.62 6.16 -52.49 -0.32 1.30 16 36 H 0.15 1.78 5.85 -52.49 -0.31 1.48 16 LS Contribution 329.14 15.07 4.96 4.96 Total: -1.00 -29.36 329.14 -7.26 -36.62 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -2.77 Total: 3.68 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: -4.02 Total: -24.85 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: 1.40 Total: -34.01 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -1.98 Total: -25.01 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.23 Total: 15.92 kcal Atomic # 16 Polarization: 23.32 SS G_CDS: -0.62 Total: 22.69 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.36 -7.26 -36.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239700548.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.699 kcal (2) G-P(sol) polarization free energy of solvation -29.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds