Wall clock time and date at job start Tue Mar 31 2020 15:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42103 * 110.54387 * 2 1 4 4 O 1.42105 * 110.54204 * 223.25180 * 2 1 3 5 5 C 1.76196 * 104.45192 * 111.62601 * 2 1 3 6 6 C 1.38381 * 120.34773 * 270.02131 * 5 2 1 7 7 N 1.31924 * 121.07610 * 179.97438 * 6 5 2 8 8 C 1.31696 * 121.87832 * 359.75482 * 7 6 5 9 9 C 1.39552 * 120.55825 * 0.53048 * 8 7 6 10 10 C 1.48039 * 120.55349 * 179.72495 * 9 8 7 11 11 C 1.39975 * 119.49361 * 179.72581 * 10 9 8 12 12 C 1.36018 * 121.18801 * 180.02562 * 11 10 9 13 13 C 1.41035 * 120.10902 * 0.02562 * 12 11 10 14 14 C 1.40458 * 120.48930 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99628 * 208.74716 * 14 13 12 16 16 C 1.40311 * 119.99912 * 28.74176 * 14 13 12 17 17 N 1.30626 * 119.99882 * 197.54004 * 16 14 13 18 18 Si 1.86794 * 119.99967 * 17.54654 * 16 14 13 19 19 H 1.48496 * 109.47250 * 269.99829 * 18 16 14 20 20 H 1.48499 * 109.47231 * 29.99653 * 18 16 14 21 21 H 1.48498 * 109.47257 * 149.99578 * 18 16 14 22 22 C 1.46634 * 119.02361 * 0.23219 * 13 12 11 23 23 C 1.43196 * 120.57178 * 179.74858 * 22 13 12 24 24 N 9.96108 * 103.45884 * 132.02803 * 2 1 3 25 25 C 1.39103 * 118.86510 * 359.48578 * 22 13 12 26 26 C 1.38339 * 120.34672 * 89.99552 * 5 2 1 27 27 H 1.08998 * 109.46930 * 308.37145 * 1 2 3 28 28 H 1.09001 * 109.47122 * 68.37350 * 1 2 3 29 29 H 1.08994 * 109.47220 * 188.37580 * 1 2 3 30 30 H 1.08001 * 119.45844 * 359.97438 * 6 5 2 31 31 H 1.07999 * 119.71897 * 180.26744 * 8 7 6 32 32 H 1.07994 * 119.40235 * 0.04740 * 11 10 9 33 33 H 1.08001 * 119.94472 * 180.02562 * 12 11 10 34 34 H 0.96996 * 120.00064 * 355.45608 * 17 16 14 35 35 H 1.07999 * 120.09430 * 180.24588 * 25 22 13 36 36 H 1.07997 * 120.85541 * 0.02562 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9118 5 6 2.2537 -0.6288 1.5861 6 6 2.4278 0.2318 2.6557 7 7 2.7565 -0.2235 3.8495 8 6 2.9289 -1.5085 4.0806 9 6 2.7777 -2.4407 3.0532 10 6 2.9774 -3.8846 3.3117 11 6 2.8145 -4.8009 2.2662 12 6 2.9890 -6.1351 2.4652 13 6 3.3399 -6.6199 3.7423 14 6 3.5216 -7.9961 3.9569 15 1 3.3301 -8.4204 4.9314 16 6 3.9516 -8.8194 2.9053 17 7 3.7976 -10.1141 2.9845 18 14 4.7446 -8.0640 1.3921 19 1 3.6963 -7.7509 0.3880 20 1 5.4519 -6.8156 1.7748 21 1 5.7160 -9.0248 0.8104 22 6 3.5069 -5.6667 4.8440 23 6 3.8575 -6.1232 6.1551 24 7 4.1324 -6.4857 7.1961 25 6 3.3242 -4.3109 4.5924 26 6 2.4281 -1.9881 1.7753 27 1 -0.3633 0.6379 0.8057 28 1 -0.3633 0.3788 -0.9553 29 1 -0.3633 -1.0166 0.1497 30 1 2.2923 1.2934 2.5108 31 1 3.1936 -1.8433 5.0727 32 1 2.5458 -4.4420 1.2837 33 1 2.8585 -6.8243 1.6440 34 1 3.4469 -10.5120 3.7966 35 1 3.4460 -3.5912 5.3883 36 1 2.2986 -2.6822 0.9581 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239700548.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:51 Heat of formation + Delta-G solvation = -13.874348 kcal Electronic energy + Delta-G solvation = -23897.078786 eV Core-core repulsion = 20244.303538 eV Total energy + Delta-G solvation = -3652.775248 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.27322 -39.62650 -38.08827 -37.20262 -36.92937 -36.19441 -34.11986 -33.40453 -32.01414 -30.96614 -30.19478 -27.28405 -25.62955 -24.31660 -23.53458 -22.80169 -20.40900 -20.07878 -19.25136 -18.37810 -17.70176 -17.61158 -17.07685 -16.65070 -16.47338 -16.06888 -15.92605 -15.34139 -15.12710 -14.86615 -14.58807 -14.50958 -14.17586 -13.97882 -13.86721 -13.78735 -13.72007 -13.41263 -13.20464 -13.08876 -12.99093 -12.88313 -12.61645 -12.20432 -12.17274 -11.89898 -11.76383 -11.52016 -11.23117 -11.04563 -10.64058 -10.45762 -9.74089 -9.68924 -9.12860 -6.79439 -0.83124 -0.41613 -0.06580 0.23103 0.90580 1.39178 1.56722 1.77529 1.86879 1.93124 2.08341 2.16910 2.49426 2.71107 3.08745 3.16668 3.34105 3.40835 3.45031 3.80104 3.83329 3.91779 4.02610 4.19047 4.22753 4.36168 4.39512 4.56154 4.70897 4.73374 4.84159 5.02978 5.04859 5.14450 5.24518 5.37642 5.54176 5.63909 5.76401 5.81490 6.09572 6.28366 6.48313 6.78128 6.83434 7.68801 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.015643 B = 0.003542 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.454220 B = 7902.869761 C = 9305.249808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.624 4.624 2 S 2.517 3.483 3 O -0.969 6.969 4 O -0.972 6.972 5 C -0.700 4.700 6 C 0.155 3.845 7 N -0.504 5.504 8 C 0.120 3.880 9 C -0.067 4.067 10 C -0.190 4.190 11 C -0.021 4.021 12 C -0.246 4.246 13 C 0.126 3.874 14 C -0.498 4.498 15 H 0.050 0.950 16 C 0.016 3.984 17 N -0.800 5.800 18 Si 1.093 2.907 19 H -0.233 1.233 20 H -0.251 1.251 21 H -0.282 1.282 22 C -0.190 4.190 23 C 0.300 3.700 24 N -0.520 5.520 25 C 0.012 3.988 26 C -0.006 4.006 27 H 0.155 0.845 28 H 0.157 0.843 29 H 0.151 0.849 30 H 0.189 0.811 31 H 0.171 0.829 32 H 0.145 0.855 33 H 0.127 0.873 34 H 0.286 0.714 35 H 0.135 0.865 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.667 18.039 -10.359 22.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.778 4.778 2 S 2.698 3.302 3 O -0.966 6.966 4 O -0.969 6.969 5 C -0.786 4.786 6 C -0.003 4.003 7 N -0.213 5.213 8 C -0.036 4.036 9 C -0.070 4.070 10 C -0.192 4.192 11 C -0.040 4.040 12 C -0.265 4.265 13 C 0.121 3.879 14 C -0.525 4.525 15 H 0.068 0.932 16 C -0.204 4.204 17 N -0.419 5.419 18 Si 0.911 3.089 19 H -0.158 1.158 20 H -0.175 1.175 21 H -0.209 1.209 22 C -0.195 4.195 23 C -0.010 4.010 24 N -0.200 5.200 25 C -0.008 4.008 26 C -0.032 4.032 27 H 0.173 0.827 28 H 0.175 0.825 29 H 0.170 0.830 30 H 0.206 0.794 31 H 0.188 0.812 32 H 0.162 0.838 33 H 0.145 0.855 34 H 0.097 0.903 35 H 0.153 0.847 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -6.938 17.795 -10.049 21.582 hybrid contribution -1.080 -1.415 2.103 2.755 sum -8.018 16.381 -7.946 19.894 Atomic orbital electron populations 1.30035 1.19138 1.14328 1.14275 1.04781 0.80027 0.73038 0.72403 1.93542 1.79739 1.37437 1.85925 1.93555 1.79741 1.62324 1.61260 1.31665 1.19466 1.03051 1.24396 1.22915 0.90198 1.00740 0.86460 1.67738 1.13050 1.16372 1.24116 1.23421 0.92524 0.87858 0.99833 1.19817 0.99095 0.93469 0.94631 1.17794 1.16863 0.90597 0.93911 1.20872 0.92690 0.91899 0.98532 1.20915 1.12151 0.96596 0.96799 1.18764 0.86441 0.91430 0.91314 1.20863 1.38417 0.94253 0.98918 0.93194 1.28748 0.92559 0.93922 1.05125 1.70507 1.29352 1.13186 1.28872 0.83429 0.77646 0.75950 0.71883 1.15773 1.17491 1.20860 1.16932 1.22003 0.93790 0.86801 1.25978 0.91109 0.91413 0.92463 1.81045 1.15198 1.09825 1.13893 1.20934 0.91378 0.92280 0.96225 1.21651 0.90371 0.94100 0.97057 0.82688 0.82474 0.83044 0.79390 0.81203 0.83768 0.85548 0.90277 0.84730 0.81556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -2.33 10.80 113.37 1.22 -1.11 16 2 S 2.52 36.40 5.81 -56.49 -0.33 36.07 16 3 O -0.97 -19.82 17.14 -127.65 -2.19 -22.01 16 4 O -0.97 -21.22 17.19 -127.65 -2.19 -23.42 16 5 C -0.70 -13.47 5.67 22.33 0.13 -13.34 16 6 C 0.16 3.25 10.63 84.71 0.90 4.15 16 7 N -0.50 -12.74 10.35 -194.71 -2.01 -14.76 16 8 C 0.12 3.04 10.59 85.03 0.90 3.94 16 9 C -0.07 -1.76 5.90 -19.93 -0.12 -1.88 16 10 C -0.19 -5.76 5.88 -19.99 -0.12 -5.88 16 11 C -0.02 -0.66 9.31 22.17 0.21 -0.45 16 12 C -0.25 -9.06 7.21 22.44 0.16 -8.90 16 13 C 0.13 5.46 5.30 -19.86 -0.11 5.35 16 14 C -0.50 -24.26 8.90 23.32 0.21 -24.05 16 15 H 0.05 2.71 7.61 -2.91 -0.02 2.69 16 16 C 0.02 0.74 5.42 85.38 0.46 1.21 16 17 N -0.80 -39.11 13.64 21.89 0.30 -38.81 16 18 Si 1.09 40.47 24.90 68.60 1.71 42.17 16 19 H -0.23 -7.36 6.44 99.48 0.64 -6.72 16 20 H -0.25 -9.09 7.02 99.48 0.70 -8.39 16 21 H -0.28 -10.37 7.11 99.48 0.71 -9.66 16 22 C -0.19 -7.72 5.93 -19.63 -0.12 -7.84 16 23 C 0.30 13.31 14.34 88.33 1.27 14.57 16 24 N -0.52 -24.35 18.54 19.00 0.35 -24.00 16 25 C 0.01 0.41 9.13 22.75 0.21 0.62 16 26 C -0.01 -0.14 8.94 22.72 0.20 0.07 16 27 H 0.15 0.04 8.14 -2.39 -0.02 0.02 16 28 H 0.16 -0.01 8.14 -2.39 -0.02 -0.03 16 29 H 0.15 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.19 2.93 7.57 -2.91 -0.02 2.91 16 31 H 0.17 3.81 6.17 -2.91 -0.02 3.79 16 32 H 0.14 3.36 6.15 -2.91 -0.02 3.34 16 33 H 0.13 4.44 4.38 -2.91 -0.01 4.43 16 34 H 0.29 14.03 8.72 -92.71 -0.81 13.22 16 35 H 0.14 3.71 6.16 -2.91 -0.02 3.69 16 36 H 0.17 3.11 5.85 -2.91 -0.02 3.09 16 Total: -1.00 -67.81 329.14 2.10 -65.72 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 1.05 Total: 12.57 kcal Atomic # 6 Polarization: -38.95 SS G_CDS: 5.41 Total: -33.54 kcal Atomic # 7 Polarization: -76.21 SS G_CDS: -1.36 Total: -77.57 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -4.38 Total: -45.43 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 1.71 Total: 42.17 kcal Atomic # 16 Polarization: 36.40 SS G_CDS: -0.33 Total: 36.07 kcal Total: -67.81 2.10 -65.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239700548.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.845 kcal (2) G-P(sol) polarization free energy of solvation -67.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds