Wall clock time and date at job start Tue Mar 31 2020 15:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 O 1.42100 * 110.54079 * 2 1 4 4 O 1.42099 * 110.54793 * 223.24300 * 2 1 3 5 5 C 1.76205 * 104.44861 * 111.61900 * 2 1 3 6 6 C 1.38318 * 120.36064 * 270.02615 * 5 2 1 7 7 N 1.31887 * 121.04019 * 179.97438 * 6 5 2 8 8 C 1.31740 * 121.85568 * 359.97438 * 7 6 5 9 9 C 1.39339 * 120.59385 * 0.02562 * 8 7 6 10 10 C 1.48322 * 120.54339 * 180.27259 * 9 8 7 11 11 C 1.39816 * 119.53626 * 179.71805 * 10 9 8 12 12 C 1.37707 * 121.17293 * 180.02562 * 11 10 9 13 13 C 1.39588 * 120.18330 * 359.97438 * 12 11 10 14 14 C 1.43196 * 120.45406 * 180.02562 * 13 12 11 15 15 N 9.70319 * 104.33793 * 99.25511 * 4 1 2 16 16 C 1.46531 * 119.08633 * 359.97438 * 13 12 11 17 17 C 1.40838 * 120.55093 * 180.02562 * 16 13 12 18 18 H 1.08004 * 120.00365 * 24.39535 * 17 16 13 19 19 C 1.40238 * 120.00352 * 204.39426 * 17 16 13 20 20 N 1.30665 * 119.99573 * 17.30966 * 19 17 16 21 21 Si 1.86800 * 120.00357 * 197.31314 * 19 17 16 22 22 H 1.48502 * 109.46979 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.46971 * 119.99807 * 21 19 17 24 24 H 1.48497 * 109.46825 * 239.99727 * 21 19 17 25 25 C 1.38592 * 119.53479 * 359.44938 * 10 9 8 26 26 C 1.38404 * 120.35179 * 90.00233 * 5 2 1 27 27 H 1.09003 * 109.47512 * 308.37976 * 1 2 3 28 28 H 1.09007 * 109.47273 * 68.37789 * 1 2 3 29 29 H 1.09003 * 109.47527 * 188.37900 * 1 2 3 30 30 H 1.08004 * 119.47724 * 359.97438 * 6 5 2 31 31 H 1.08000 * 119.70394 * 180.02562 * 8 7 6 32 32 H 1.07998 * 119.41201 * 0.02562 * 11 10 9 33 33 H 1.07999 * 119.91332 * 180.02562 * 12 11 10 34 34 H 0.97001 * 119.99798 * 184.51263 * 20 19 17 35 35 H 1.08005 * 120.13501 * 359.97438 * 25 10 9 36 36 H 1.07998 * 120.84914 * 359.97438 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3125 1.3307 0.0000 4 8 2.3127 -0.9693 -0.9116 5 6 2.2536 -0.6287 1.5863 6 6 2.4275 0.2314 2.6555 7 7 2.7560 -0.2246 3.8486 8 6 2.9323 -1.5100 4.0774 9 6 2.7757 -2.4407 3.0524 10 6 2.9685 -3.8882 3.3126 11 6 2.8002 -4.8043 2.2699 12 6 2.9704 -6.1555 2.4739 13 6 3.3175 -6.6363 3.7375 14 6 3.4964 -8.0401 3.9560 15 7 3.6415 -9.1535 4.1287 16 6 3.4975 -5.6846 4.8371 17 6 3.8482 -6.1358 6.1243 18 1 4.3606 -7.0788 6.2450 19 6 3.5322 -5.3606 7.2494 20 7 2.6374 -4.4127 7.1592 21 14 4.3906 -5.6829 8.8769 22 1 5.3534 -6.8020 8.7156 23 1 5.1183 -4.4607 9.3033 24 1 3.3819 -6.0427 9.9056 25 6 3.3185 -4.3130 4.5845 26 6 2.4281 -1.9885 1.7758 27 1 -0.3634 0.6380 0.8056 28 1 -0.3634 0.3787 -0.9554 29 1 -0.3634 -1.0167 0.1498 30 1 2.2921 1.2931 2.5110 31 1 3.2007 -1.8453 5.0683 32 1 2.5321 -4.4459 1.2871 33 1 2.8357 -6.8452 1.6538 34 1 2.4658 -3.8339 7.9185 35 1 3.4499 -3.5937 5.3794 36 1 2.2980 -2.6827 0.9589 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239701090.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:50 Heat of formation + Delta-G solvation = 9.256539 kcal Electronic energy + Delta-G solvation = -23968.882973 eV Core-core repulsion = 20317.110756 eV Total energy + Delta-G solvation = -3651.772217 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.15828 -37.84313 -37.25023 -36.09857 -35.32155 -34.42079 -32.80010 -32.21242 -30.15995 -29.75924 -28.81662 -26.12758 -24.29806 -23.82834 -21.62382 -21.03991 -19.07153 -18.19015 -17.60957 -17.32131 -16.56811 -16.51961 -16.32758 -15.62379 -15.33533 -14.67135 -14.01113 -13.94848 -13.65014 -13.55187 -13.45419 -13.24401 -12.98181 -12.80348 -12.66226 -12.36178 -12.24289 -12.11284 -11.90309 -11.70429 -11.50244 -11.40972 -11.34441 -11.23764 -11.12684 -10.75633 -10.27744 -10.11502 -10.00346 -9.73658 -9.36470 -9.32467 -7.96651 -7.52308 -7.25690 -4.88670 -0.13291 0.63493 1.02163 2.15136 2.48940 2.68076 2.85343 2.90656 2.94136 3.48783 3.60040 3.78494 3.81006 3.91825 4.17737 4.32055 4.44648 4.50843 4.59129 4.84484 4.97023 5.05676 5.24832 5.30595 5.34765 5.36678 5.59251 5.75664 5.90710 6.11360 6.15773 6.52800 6.59850 6.65054 6.80049 6.98545 7.26898 7.45699 7.52516 7.65993 7.88412 8.02233 8.25228 8.34316 8.70509 9.59034 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016030 B = 0.003466 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.348123 B = 8076.488408 C = 9535.771605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.509 3.491 3 O -0.939 6.939 4 O -0.936 6.936 5 C -0.716 4.716 6 C 0.173 3.827 7 N -0.492 5.492 8 C 0.154 3.846 9 C -0.082 4.082 10 C -0.023 4.023 11 C -0.239 4.239 12 C -0.024 4.024 13 C -0.181 4.181 14 C 0.298 3.702 15 N -0.505 5.505 16 C 0.148 3.852 17 C -0.423 4.423 18 H 0.088 0.912 19 C 0.077 3.923 20 N -0.765 5.765 21 Si 0.914 3.086 22 H -0.255 1.255 23 H -0.264 1.264 24 H -0.268 1.268 25 C -0.138 4.138 26 C 0.017 3.983 27 H 0.132 0.868 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.168 0.832 31 H 0.172 0.828 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.292 0.708 35 H 0.132 0.868 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.316 11.790 -7.045 14.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.688 3.312 3 O -0.936 6.936 4 O -0.933 6.933 5 C -0.805 4.805 6 C 0.014 3.986 7 N -0.200 5.200 8 C -0.001 4.001 9 C -0.084 4.084 10 C -0.025 4.025 11 C -0.259 4.259 12 C -0.044 4.044 13 C -0.187 4.187 14 C -0.012 4.012 15 N -0.184 5.184 16 C 0.143 3.857 17 C -0.450 4.450 18 H 0.106 0.894 19 C -0.146 4.146 20 N -0.387 5.387 21 Si 0.737 3.263 22 H -0.178 1.178 23 H -0.189 1.189 24 H -0.193 1.193 25 C -0.157 4.157 26 C -0.009 4.009 27 H 0.151 0.849 28 H 0.149 0.851 29 H 0.152 0.848 30 H 0.185 0.815 31 H 0.189 0.811 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.104 0.896 35 H 0.150 0.850 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.596 11.041 -6.546 13.634 hybrid contribution -0.410 -0.524 0.766 1.014 sum -5.006 10.517 -5.781 13.003 Atomic orbital electron populations 1.30228 1.25745 1.12315 1.11734 1.04950 0.77753 0.74524 0.74021 1.93577 1.77406 1.36537 1.86099 1.93594 1.77264 1.61557 1.60849 1.31347 1.21664 1.03868 1.23612 1.22522 0.89790 0.99487 0.86834 1.67809 1.12898 1.16529 1.22792 1.23513 0.89382 0.87410 0.99834 1.20196 0.99103 0.95529 0.93619 1.18276 1.00915 0.88576 0.94754 1.20114 1.15685 0.92495 0.97560 1.20389 0.95220 0.94686 0.94130 1.16990 1.21558 0.83888 0.96235 1.25760 0.91379 0.92593 0.91451 1.81036 1.14401 1.12939 1.10018 1.18321 0.86503 0.90021 0.90902 1.19857 1.29481 1.05538 0.90154 0.89353 1.26109 0.92737 0.93741 1.02045 1.69693 1.21394 1.13690 1.33929 0.86119 0.80269 0.80284 0.79676 1.17828 1.18890 1.19321 1.21394 1.04186 0.95748 0.94357 1.21490 0.89033 0.92949 0.97448 0.84934 0.85059 0.84800 0.81530 0.81107 0.87931 0.87832 0.89606 0.85034 0.82768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.42 10.79 101.05 1.09 -2.33 16 2 S 2.51 23.90 5.81 -107.50 -0.62 23.28 16 3 O -0.94 -11.32 17.14 -57.54 -0.99 -12.31 16 4 O -0.94 -12.00 17.19 -57.54 -0.99 -12.99 16 5 C -0.72 -8.76 5.67 -39.49 -0.22 -8.98 16 6 C 0.17 2.25 10.63 -17.50 -0.19 2.06 16 7 N -0.49 -7.55 10.35 -12.96 -0.13 -7.69 16 8 C 0.15 2.50 10.58 -17.18 -0.18 2.32 16 9 C -0.08 -1.35 5.89 -104.75 -0.62 -1.96 16 10 C -0.02 -0.44 5.86 -105.03 -0.62 -1.06 16 11 C -0.24 -4.31 9.38 -39.19 -0.37 -4.68 16 12 C -0.02 -0.45 9.74 -39.27 -0.38 -0.83 16 13 C -0.18 -3.91 5.95 -104.13 -0.62 -4.53 16 14 C 0.30 6.70 14.28 -22.47 -0.32 6.38 16 15 N -0.50 -11.76 18.54 41.84 0.78 -10.99 16 16 C 0.15 3.34 5.73 -104.68 -0.60 2.74 16 17 C -0.42 -9.73 8.58 -37.85 -0.32 -10.06 16 18 H 0.09 2.08 7.37 -52.48 -0.39 1.70 16 19 C 0.08 1.62 5.16 -17.30 -0.09 1.53 16 20 N -0.76 -16.16 10.94 55.56 0.61 -15.55 16 21 Si 0.91 16.31 29.60 -169.99 -5.03 11.28 16 22 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 23 H -0.26 -4.55 7.11 56.52 0.40 -4.15 16 24 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 25 C -0.14 -2.87 8.07 -38.56 -0.31 -3.18 16 26 C 0.02 0.23 8.94 -38.93 -0.35 -0.11 16 27 H 0.13 0.51 8.14 -51.92 -0.42 0.09 16 28 H 0.13 0.45 8.14 -51.92 -0.42 0.03 16 29 H 0.13 0.60 8.14 -51.92 -0.42 0.18 16 30 H 0.17 1.68 7.57 -52.48 -0.40 1.29 16 31 H 0.17 2.73 6.17 -52.49 -0.32 2.41 16 32 H 0.10 1.57 6.16 -52.49 -0.32 1.25 16 33 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 34 H 0.29 5.52 8.30 -40.82 -0.34 5.18 16 35 H 0.13 2.70 4.27 -52.48 -0.22 2.47 16 36 H 0.15 1.94 5.85 -52.49 -0.31 1.64 16 LS Contribution 334.33 15.07 5.04 5.04 Total: -1.00 -29.68 334.33 -8.23 -37.91 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -2.79 Total: 4.71 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -4.10 Total: -22.69 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 1.25 Total: -34.23 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -1.98 Total: -25.29 kcal Atomic # 14 Polarization: 16.31 SS G_CDS: -5.03 Total: 11.28 kcal Atomic # 16 Polarization: 23.90 SS G_CDS: -0.62 Total: 23.28 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.68 -8.23 -37.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239701090.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.162 kcal (2) G-P(sol) polarization free energy of solvation -29.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds