Wall clock time and date at job start Tue Mar 31 2020 15:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 O 1.42100 * 110.54079 * 2 1 4 4 O 1.42099 * 110.54793 * 223.24300 * 2 1 3 5 5 C 1.76205 * 104.44861 * 111.61900 * 2 1 3 6 6 C 1.38318 * 120.36064 * 270.02615 * 5 2 1 7 7 N 1.31887 * 121.04019 * 179.97438 * 6 5 2 8 8 C 1.31740 * 121.85568 * 359.97438 * 7 6 5 9 9 C 1.39339 * 120.59385 * 0.02562 * 8 7 6 10 10 C 1.48322 * 120.54339 * 180.27259 * 9 8 7 11 11 C 1.39816 * 119.53626 * 179.71805 * 10 9 8 12 12 C 1.37707 * 121.17293 * 180.02562 * 11 10 9 13 13 C 1.39588 * 120.18330 * 359.97438 * 12 11 10 14 14 C 1.43196 * 120.45406 * 180.02562 * 13 12 11 15 15 N 9.70319 * 104.33793 * 99.25511 * 4 1 2 16 16 C 1.46531 * 119.08633 * 359.97438 * 13 12 11 17 17 C 1.40838 * 120.55093 * 180.02562 * 16 13 12 18 18 H 1.08004 * 120.00365 * 24.39535 * 17 16 13 19 19 C 1.40238 * 120.00352 * 204.39426 * 17 16 13 20 20 N 1.30665 * 119.99573 * 17.30966 * 19 17 16 21 21 Si 1.86800 * 120.00357 * 197.31314 * 19 17 16 22 22 H 1.48502 * 109.46979 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.46971 * 119.99807 * 21 19 17 24 24 H 1.48497 * 109.46825 * 239.99727 * 21 19 17 25 25 C 1.38592 * 119.53479 * 359.44938 * 10 9 8 26 26 C 1.38404 * 120.35179 * 90.00233 * 5 2 1 27 27 H 1.09003 * 109.47512 * 308.37976 * 1 2 3 28 28 H 1.09007 * 109.47273 * 68.37789 * 1 2 3 29 29 H 1.09003 * 109.47527 * 188.37900 * 1 2 3 30 30 H 1.08004 * 119.47724 * 359.97438 * 6 5 2 31 31 H 1.08000 * 119.70394 * 180.02562 * 8 7 6 32 32 H 1.07998 * 119.41201 * 0.02562 * 11 10 9 33 33 H 1.07999 * 119.91332 * 180.02562 * 12 11 10 34 34 H 0.97001 * 119.99798 * 184.51263 * 20 19 17 35 35 H 1.08005 * 120.13501 * 359.97438 * 25 10 9 36 36 H 1.07998 * 120.84914 * 359.97438 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3125 1.3307 0.0000 4 8 2.3127 -0.9693 -0.9116 5 6 2.2536 -0.6287 1.5863 6 6 2.4275 0.2314 2.6555 7 7 2.7560 -0.2246 3.8486 8 6 2.9323 -1.5100 4.0774 9 6 2.7757 -2.4407 3.0524 10 6 2.9685 -3.8882 3.3126 11 6 2.8002 -4.8043 2.2699 12 6 2.9704 -6.1555 2.4739 13 6 3.3175 -6.6363 3.7375 14 6 3.4964 -8.0401 3.9560 15 7 3.6415 -9.1535 4.1287 16 6 3.4975 -5.6846 4.8371 17 6 3.8482 -6.1358 6.1243 18 1 4.3606 -7.0788 6.2450 19 6 3.5322 -5.3606 7.2494 20 7 2.6374 -4.4127 7.1592 21 14 4.3906 -5.6829 8.8769 22 1 5.3534 -6.8020 8.7156 23 1 5.1183 -4.4607 9.3033 24 1 3.3819 -6.0427 9.9056 25 6 3.3185 -4.3130 4.5845 26 6 2.4281 -1.9885 1.7758 27 1 -0.3634 0.6380 0.8056 28 1 -0.3634 0.3787 -0.9554 29 1 -0.3634 -1.0167 0.1498 30 1 2.2921 1.2931 2.5110 31 1 3.2007 -1.8453 5.0683 32 1 2.5321 -4.4459 1.2871 33 1 2.8357 -6.8452 1.6538 34 1 2.4658 -3.8339 7.9185 35 1 3.4499 -3.5937 5.3794 36 1 2.2980 -2.6827 0.9589 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239701090.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:49 Heat of formation + Delta-G solvation = -9.392150 kcal Electronic energy + Delta-G solvation = -23969.691641 eV Core-core repulsion = 20317.110756 eV Total energy + Delta-G solvation = -3652.580885 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.33628 -39.36607 -38.10700 -37.06083 -36.94765 -35.98195 -34.11985 -33.38440 -31.73361 -30.29854 -30.13514 -27.71191 -25.56710 -25.05619 -22.98899 -22.55732 -19.97421 -19.63930 -18.93454 -18.63099 -17.71823 -17.62861 -17.11425 -16.96418 -16.32627 -16.03692 -15.48743 -15.14668 -15.10343 -14.58929 -14.54428 -14.39894 -14.03504 -13.96321 -13.87074 -13.58511 -13.48222 -13.36975 -13.10733 -13.09782 -12.99104 -12.85365 -12.76567 -12.50433 -12.19415 -11.95642 -11.71168 -11.53537 -11.32155 -11.14862 -10.68815 -10.51773 -9.56067 -9.04563 -8.80198 -6.56917 -0.85524 -0.53912 -0.17721 0.68092 0.96108 1.36440 1.47232 1.49771 1.89739 2.02551 2.12233 2.21397 2.62003 2.69950 3.06652 3.14185 3.34027 3.57062 3.64385 3.76810 3.79960 3.86804 4.08797 4.18860 4.28565 4.44053 4.46010 4.61308 4.84131 4.87047 4.98581 5.04462 5.08544 5.20645 5.37912 5.51855 5.71865 5.87747 5.97867 6.09408 6.36797 6.61465 6.71853 6.75431 6.95257 8.04099 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016030 B = 0.003466 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.348123 B = 8076.488408 C = 9535.771605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.624 4.624 2 S 2.521 3.479 3 O -0.966 6.966 4 O -0.970 6.970 5 C -0.711 4.711 6 C 0.174 3.826 7 N -0.509 5.509 8 C 0.145 3.855 9 C -0.107 4.107 10 C -0.015 4.015 11 C -0.232 4.232 12 C -0.022 4.022 13 C -0.206 4.206 14 C 0.304 3.696 15 N -0.530 5.530 16 C 0.129 3.871 17 C -0.460 4.460 18 H 0.069 0.931 19 C 0.050 3.950 20 N -0.783 5.783 21 Si 0.971 3.029 22 H -0.268 1.268 23 H -0.250 1.250 24 H -0.263 1.263 25 C -0.161 4.161 26 C 0.021 3.979 27 H 0.155 0.845 28 H 0.160 0.840 29 H 0.150 0.850 30 H 0.197 0.803 31 H 0.161 0.839 32 H 0.137 0.863 33 H 0.130 0.870 34 H 0.302 0.698 35 H 0.128 0.872 36 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.077 13.984 -8.851 17.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.778 4.778 2 S 2.701 3.299 3 O -0.964 6.964 4 O -0.968 6.968 5 C -0.796 4.796 6 C 0.015 3.985 7 N -0.218 5.218 8 C -0.010 4.010 9 C -0.110 4.110 10 C -0.016 4.016 11 C -0.251 4.251 12 C -0.042 4.042 13 C -0.212 4.212 14 C -0.004 4.004 15 N -0.210 5.210 16 C 0.124 3.876 17 C -0.488 4.488 18 H 0.087 0.913 19 C -0.171 4.171 20 N -0.406 5.406 21 Si 0.792 3.208 22 H -0.192 1.192 23 H -0.174 1.174 24 H -0.188 1.188 25 C -0.180 4.180 26 C -0.005 4.005 27 H 0.174 0.826 28 H 0.178 0.822 29 H 0.169 0.831 30 H 0.214 0.786 31 H 0.178 0.822 32 H 0.155 0.845 33 H 0.148 0.852 34 H 0.114 0.886 35 H 0.145 0.855 36 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -6.309 13.232 -8.331 16.861 hybrid contribution 0.003 -0.995 1.107 1.489 sum -6.307 12.236 -7.224 15.546 Atomic orbital electron populations 1.30042 1.18998 1.14343 1.14404 1.04738 0.80041 0.73012 0.72101 1.93543 1.79770 1.37279 1.85780 1.93551 1.79785 1.62342 1.61083 1.31805 1.20090 1.02876 1.24858 1.23102 0.88137 1.01054 0.86225 1.67825 1.13702 1.15934 1.24304 1.23398 0.89992 0.88001 0.99633 1.20087 1.01629 0.94201 0.95047 1.18535 0.98731 0.90296 0.94072 1.20539 1.13806 0.91946 0.98774 1.20706 0.94066 0.95705 0.93734 1.17244 1.23206 0.83315 0.97414 1.26015 0.90790 0.92814 0.90826 1.81008 1.15619 1.13592 1.10748 1.18602 0.86765 0.91061 0.91157 1.19887 1.31591 1.05759 0.91541 0.91326 1.26646 0.92991 0.93449 1.04023 1.69682 1.21668 1.14097 1.35129 0.85287 0.79109 0.80031 0.76381 1.19248 1.17401 1.18792 1.21375 1.06125 0.94969 0.95515 1.21713 0.87874 0.94247 0.96667 0.82644 0.82233 0.83118 0.78636 0.82152 0.84504 0.85179 0.88612 0.85484 0.81118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -3.07 10.79 113.37 1.22 -1.84 16 2 S 2.52 39.51 5.81 -56.49 -0.33 39.18 16 3 O -0.97 -20.56 17.14 -127.65 -2.19 -22.75 16 4 O -0.97 -22.23 17.19 -127.65 -2.19 -24.43 16 5 C -0.71 -15.43 5.67 22.33 0.13 -15.31 16 6 C 0.17 4.10 10.63 84.70 0.90 5.00 16 7 N -0.51 -15.12 10.35 -194.92 -2.02 -17.14 16 8 C 0.15 4.71 10.58 84.97 0.90 5.60 16 9 C -0.11 -3.44 5.89 -19.95 -0.12 -3.56 16 10 C -0.01 -0.54 5.86 -20.13 -0.12 -0.66 16 11 C -0.23 -7.95 9.38 22.53 0.21 -7.74 16 12 C -0.02 -0.80 9.74 22.47 0.22 -0.58 16 13 C -0.21 -9.09 5.95 -19.54 -0.12 -9.21 16 14 C 0.30 14.09 14.28 88.33 1.26 15.35 16 15 N -0.53 -25.37 18.54 19.00 0.35 -25.02 16 16 C 0.13 6.09 5.73 -19.90 -0.11 5.98 16 17 C -0.46 -22.35 8.58 23.39 0.20 -22.14 16 18 H 0.07 3.47 7.37 -2.91 -0.02 3.45 16 19 C 0.05 2.20 5.16 85.35 0.44 2.64 16 20 N -0.78 -34.08 10.94 21.88 0.24 -33.84 16 21 Si 0.97 34.34 29.60 68.60 2.03 36.37 16 22 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 23 H -0.25 -8.20 7.11 99.48 0.71 -7.49 16 24 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 25 C -0.16 -6.92 8.07 22.93 0.19 -6.74 16 26 C 0.02 0.53 8.94 22.69 0.20 0.74 16 27 H 0.16 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.16 0.10 8.14 -2.39 -0.02 0.08 16 29 H 0.15 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.20 3.34 7.57 -2.91 -0.02 3.32 16 31 H 0.16 5.39 6.17 -2.91 -0.02 5.38 16 32 H 0.14 3.72 6.16 -2.91 -0.02 3.70 16 33 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 34 H 0.30 11.62 8.30 -92.71 -0.77 10.86 16 35 H 0.13 5.48 4.27 -2.91 -0.01 5.47 16 36 H 0.17 3.74 5.85 -2.91 -0.02 3.72 16 Total: -1.00 -66.97 334.33 2.46 -64.51 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 1.16 Total: 15.59 kcal Atomic # 6 Polarization: -37.88 SS G_CDS: 5.40 Total: -32.48 kcal Atomic # 7 Polarization: -74.57 SS G_CDS: -1.43 Total: -76.00 kcal Atomic # 8 Polarization: -42.79 SS G_CDS: -4.38 Total: -47.18 kcal Atomic # 14 Polarization: 34.34 SS G_CDS: 2.03 Total: 36.37 kcal Atomic # 16 Polarization: 39.51 SS G_CDS: -0.33 Total: 39.18 kcal Total: -66.97 2.46 -64.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239701090.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.116 kcal (2) G-P(sol) polarization free energy of solvation -66.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds