Wall clock time and date at job start Tue Mar 31 2020 14:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.39092 * 120.56870 * 42.59136 * 3 2 1 5 5 C 1.39367 * 119.80362 * 180.25175 * 4 3 2 6 6 C 1.48032 * 119.49628 * 179.73161 * 5 4 3 7 7 C 1.39598 * 120.14320 * 359.74455 * 6 5 4 8 8 C 1.37921 * 119.85622 * 179.74316 * 7 6 5 9 9 C 1.38406 * 120.14202 * 0.51116 * 8 7 6 10 10 C 1.38372 * 120.28818 * 359.76658 * 9 8 7 11 11 S 1.76200 * 119.92719 * 179.97438 * 10 9 8 12 12 N 1.65596 * 107.22073 * 270.01898 * 11 10 9 13 13 O 1.42096 * 106.40353 * 23.56339 * 11 10 9 14 14 O 1.42102 * 106.39887 * 156.48213 * 11 10 9 15 15 C 1.37959 * 120.14178 * 359.97438 * 10 9 8 16 16 C 1.39973 * 121.00629 * 359.75134 * 5 4 3 17 17 C 1.36016 * 121.19036 * 359.97438 * 16 5 4 18 18 C 1.41037 * 120.10956 * 0.02562 * 17 16 5 19 19 C 1.40449 * 120.49165 * 179.97438 * 18 17 16 20 20 H 1.07993 * 120.00267 * 154.64057 * 19 18 17 21 21 C 1.40314 * 119.99866 * 334.64044 * 19 18 17 22 22 N 1.30626 * 120.00101 * 334.62127 * 21 19 18 23 23 Si 1.86802 * 119.99894 * 154.61574 * 21 19 18 24 24 H 1.48494 * 109.46816 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.47167 * 300.00127 * 23 21 19 26 26 H 1.48500 * 109.46695 * 60.00374 * 23 21 19 27 27 H 1.07999 * 120.10048 * 359.96043 * 4 3 2 28 28 H 1.08001 * 120.07070 * 0.02562 * 7 6 5 29 29 H 1.08000 * 119.93085 * 180.23848 * 8 7 6 30 30 H 1.08003 * 119.85895 * 179.74269 * 9 8 7 31 31 H 0.97004 * 119.99446 * 0.02562 * 12 11 10 32 32 H 0.96997 * 120.00447 * 180.02562 * 12 11 10 33 33 H 1.07997 * 120.07566 * 179.97438 * 15 10 9 34 34 H 1.08001 * 119.40696 * 179.97438 * 16 5 4 35 35 H 1.08004 * 119.94500 * 179.97438 * 17 16 5 36 36 H 0.97005 * 120.00436 * 354.17876 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2758 -0.8807 -0.8105 5 6 4.6693 -0.8700 -0.7940 6 6 5.4157 -1.8150 -1.6549 7 6 4.7267 -2.7128 -2.4722 8 6 5.4280 -3.5871 -3.2759 9 6 6.8120 -3.5828 -3.2654 10 6 7.5011 -2.6994 -2.4533 11 16 9.2630 -2.7026 -2.4470 12 7 9.7471 -3.7718 -1.2787 13 8 9.6678 -3.2573 -3.6910 14 8 9.6650 -1.4140 -2.0029 15 6 6.8114 -1.8162 -1.6486 16 6 5.3739 0.0204 0.0245 17 6 4.7231 0.9033 0.8289 18 6 3.3132 0.9344 0.8505 19 6 2.6330 1.8423 1.6784 20 1 1.6335 2.1618 1.4230 21 6 3.2520 2.3344 2.8374 22 7 4.1889 1.6379 3.4235 23 14 2.7365 3.9858 3.5423 24 1 3.5367 4.2760 4.7591 25 1 2.9688 5.0494 2.5323 26 1 1.2947 3.9447 3.8955 27 1 2.7471 -1.5746 -1.4472 28 1 3.6467 -2.7196 -2.4785 29 1 4.8961 -4.2795 -3.9115 30 1 7.3566 -4.2723 -3.8935 31 1 9.0855 -4.2516 -0.7563 32 1 10.6922 -3.9182 -1.1167 33 1 7.3503 -1.1274 -1.0149 34 1 6.4538 0.0062 0.0172 35 1 5.2869 1.5812 1.4527 36 1 4.3983 0.7447 3.1083 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240165287.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:05 Heat of formation + Delta-G solvation = -19.034951 kcal Electronic energy + Delta-G solvation = -23794.021647 eV Core-core repulsion = 20141.022618 eV Total energy + Delta-G solvation = -3652.999028 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.39238 -37.84154 -37.14189 -35.83781 -35.40227 -34.73691 -33.30489 -31.83621 -31.42086 -30.12150 -28.92473 -25.77436 -23.78819 -22.83513 -21.82259 -21.00348 -19.46490 -18.72699 -18.29349 -17.46466 -16.94824 -16.66526 -15.86377 -15.52735 -15.06306 -14.98348 -14.46257 -14.09857 -13.97006 -13.65331 -13.24921 -12.95673 -12.84027 -12.55350 -12.32866 -12.20324 -12.10298 -12.00819 -11.97779 -11.85032 -11.53428 -11.41733 -11.24681 -11.04810 -10.67997 -10.61848 -10.61591 -10.07746 -10.06450 -9.64612 -9.33254 -9.05688 -8.19918 -7.87215 -7.56605 -5.02288 0.36947 0.87234 1.25339 1.94221 2.41662 2.90475 2.95562 3.10249 3.12000 3.47755 3.61823 3.66112 3.72220 4.09091 4.21215 4.51839 4.93352 4.97008 5.07551 5.09681 5.16050 5.39099 5.52035 5.61679 5.79849 5.83629 5.86757 6.13127 6.14725 6.29997 6.39768 6.45006 6.59429 6.79295 6.86359 6.92508 7.07987 7.19551 7.25123 7.39357 7.52795 7.65890 8.06398 8.17426 8.56309 9.39383 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016291 B = 0.003199 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.306218 B = 8751.619397 C =10194.517028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C 0.296 3.704 3 C -0.186 4.186 4 C 0.013 3.987 5 C -0.224 4.224 6 C 0.007 3.993 7 C -0.091 4.091 8 C -0.126 4.126 9 C -0.062 4.062 10 C -0.658 4.658 11 S 2.701 3.299 12 N -1.252 6.252 13 O -0.971 6.971 14 O -0.965 6.965 15 C -0.046 4.046 16 C -0.038 4.038 17 C -0.213 4.213 18 C 0.126 3.874 19 C -0.451 4.451 20 H 0.089 0.911 21 C 0.034 3.966 22 N -0.746 5.746 23 Si 1.067 2.933 24 H -0.266 1.266 25 H -0.267 1.267 26 H -0.269 1.269 27 H 0.105 0.895 28 H 0.128 0.872 29 H 0.126 0.874 30 H 0.133 0.867 31 H 0.417 0.583 32 H 0.417 0.583 33 H 0.141 0.859 34 H 0.104 0.896 35 H 0.117 0.883 36 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.917 -8.248 -4.498 12.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.178 5.178 2 C -0.014 4.014 3 C -0.192 4.192 4 C -0.008 4.008 5 C -0.225 4.225 6 C 0.006 3.994 7 C -0.109 4.109 8 C -0.145 4.145 9 C -0.082 4.082 10 C -0.747 4.747 11 S 2.792 3.208 12 N -0.925 5.925 13 O -0.960 6.960 14 O -0.954 6.954 15 C -0.065 4.065 16 C -0.057 4.057 17 C -0.232 4.232 18 C 0.120 3.880 19 C -0.476 4.476 20 H 0.108 0.892 21 C -0.194 4.194 22 N -0.366 5.366 23 Si 0.888 3.112 24 H -0.190 1.190 25 H -0.191 1.191 26 H -0.194 1.194 27 H 0.123 0.877 28 H 0.146 0.854 29 H 0.144 0.856 30 H 0.151 0.849 31 H 0.244 0.756 32 H 0.247 0.753 33 H 0.158 0.842 34 H 0.122 0.878 35 H 0.135 0.865 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 8.063 -6.562 -3.954 11.123 hybrid contribution -0.517 -1.678 -0.756 1.912 sum 7.546 -8.241 -4.710 12.125 Atomic orbital electron populations 1.81056 1.12566 1.11693 1.12501 1.25691 0.92619 0.91663 0.91445 1.16662 0.83351 1.06492 1.12692 1.20642 0.92735 0.93957 0.93491 1.17628 0.91805 1.05331 1.07778 1.18993 0.92310 0.93889 0.94204 1.21569 1.00335 0.94272 0.94749 1.21109 0.94030 0.99656 0.99729 1.20740 0.94856 0.96412 0.96178 1.30197 1.24634 1.09048 1.10843 1.01440 0.73323 0.73136 0.72946 1.53074 1.17213 1.64187 1.58074 1.93578 1.81143 1.78956 1.42340 1.93607 1.81054 1.39259 1.81495 1.21005 0.94328 0.95475 0.95723 1.20491 0.98156 0.93458 0.93554 1.20799 0.93521 1.03528 1.05392 1.18521 0.91476 0.88229 0.89751 1.21028 1.03359 1.17734 1.05467 0.89247 1.27497 0.92178 1.05383 0.94310 1.70409 1.19589 1.11753 1.34837 0.83581 0.77596 0.72519 0.77533 1.19036 1.19140 1.19434 0.87683 0.85379 0.85595 0.84893 0.75583 0.75284 0.84173 0.87844 0.86492 0.87662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.41 18.54 41.84 0.78 -10.63 16 2 C 0.30 6.53 14.30 -22.47 -0.32 6.21 16 3 C -0.19 -3.96 5.93 -104.27 -0.62 -4.58 16 4 C 0.01 0.24 9.12 -38.84 -0.35 -0.12 16 5 C -0.22 -4.08 5.88 -104.81 -0.62 -4.70 16 6 C 0.01 0.11 5.88 -104.88 -0.62 -0.50 16 7 C -0.09 -1.26 9.42 -39.19 -0.37 -1.63 16 8 C -0.13 -1.52 10.03 -39.64 -0.40 -1.91 16 9 C -0.06 -0.75 9.52 -39.47 -0.38 -1.13 16 10 C -0.66 -8.48 5.94 -39.63 -0.24 -8.72 16 11 S 2.70 31.44 6.28 -107.50 -0.67 30.76 16 12 N -1.25 -9.30 9.55 60.35 0.58 -8.72 16 13 O -0.97 -13.64 17.27 -57.17 -0.99 -14.63 16 14 O -0.96 -14.56 17.28 -57.17 -0.99 -15.55 16 15 C -0.05 -0.68 8.89 -39.19 -0.35 -1.03 16 16 C -0.04 -0.71 9.30 -39.73 -0.37 -1.08 16 17 C -0.21 -4.45 7.88 -39.32 -0.31 -4.76 16 18 C 0.13 2.81 5.46 -104.61 -0.57 2.24 16 19 C -0.45 -10.23 8.48 -37.97 -0.32 -10.56 16 20 H 0.09 2.07 7.45 -52.49 -0.39 1.68 16 21 C 0.03 0.73 4.95 -17.28 -0.09 0.64 16 22 N -0.75 -16.48 12.30 55.57 0.68 -15.79 16 23 Si 1.07 18.39 30.01 -169.99 -5.10 13.29 16 24 H -0.27 -4.54 7.11 56.52 0.40 -4.13 16 25 H -0.27 -4.45 7.11 56.52 0.40 -4.05 16 26 H -0.27 -4.54 7.11 56.52 0.40 -4.14 16 27 H 0.11 1.71 6.13 -52.49 -0.32 1.39 16 28 H 0.13 1.61 6.15 -52.49 -0.32 1.29 16 29 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 30 H 0.13 1.35 7.61 -52.48 -0.40 0.95 16 31 H 0.42 2.31 8.92 -34.46 -0.31 2.00 16 32 H 0.42 2.29 8.96 -34.47 -0.31 1.98 16 33 H 0.14 2.02 5.68 -52.49 -0.30 1.72 16 34 H 0.10 1.73 6.09 -52.49 -0.32 1.41 16 35 H 0.12 2.47 6.48 -52.48 -0.34 2.13 16 36 H 0.31 6.89 6.68 -40.82 -0.27 6.62 16 LS Contribution 331.74 15.07 5.00 5.00 Total: -1.00 -29.19 331.74 -9.13 -38.32 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -2.50 Total: 9.59 kcal Atomic # 6 Polarization: -25.72 SS G_CDS: -5.91 Total: -31.63 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 2.04 Total: -35.15 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -1.98 Total: -30.18 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.10 Total: 13.29 kcal Atomic # 16 Polarization: 31.44 SS G_CDS: -0.67 Total: 30.76 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.19 -9.13 -38.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240165287.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.282 kcal (2) G-P(sol) polarization free energy of solvation -29.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds