Wall clock time and date at job start Tue Mar 31 2020 14:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39577 * 120.45624 * 12.71625 * 3 2 1 5 5 C 1.37718 * 120.18070 * 179.97438 * 4 3 2 6 6 C 1.39816 * 121.17824 * 359.97288 * 5 4 3 7 7 C 1.48312 * 119.54034 * 180.02562 * 6 5 4 8 8 C 1.39396 * 120.12741 * 179.74505 * 7 6 5 9 9 C 1.37983 * 119.87596 * 179.74469 * 8 7 6 10 10 C 1.38350 * 120.12374 * 0.50659 * 9 8 7 11 11 C 1.38305 * 120.25370 * 359.77288 * 10 9 8 12 12 S 1.76204 * 119.94035 * 179.97438 * 11 10 9 13 13 N 1.65597 * 107.21753 * 270.02101 * 12 11 10 14 14 O 1.42106 * 106.39872 * 23.55854 * 12 11 10 15 15 O 1.42098 * 106.40262 * 156.47743 * 12 11 10 16 16 C 1.38030 * 120.12275 * 359.97102 * 11 10 9 17 17 C 1.38603 * 120.92249 * 0.04598 * 6 5 4 18 18 C 1.40614 * 119.73593 * 0.25518 * 17 6 5 19 19 C 1.40833 * 120.55251 * 179.72232 * 18 17 6 20 20 H 1.07999 * 119.99824 * 149.58956 * 19 18 17 21 21 C 1.40228 * 120.00496 * 329.58914 * 19 18 17 22 22 N 1.30663 * 120.00669 * 162.35446 * 21 19 18 23 23 Si 1.86803 * 119.99619 * 342.35509 * 21 19 18 24 24 H 1.48504 * 109.47525 * 95.42026 * 23 21 19 25 25 H 1.48507 * 109.47265 * 215.41757 * 23 21 19 26 26 H 1.48500 * 109.47027 * 335.41841 * 23 21 19 27 27 H 1.07994 * 119.90961 * 359.96906 * 4 3 2 28 28 H 1.08012 * 119.41051 * 180.02562 * 5 4 3 29 29 H 1.08008 * 120.05954 * 0.02562 * 8 7 6 30 30 H 1.07999 * 119.93938 * 180.23795 * 9 8 7 31 31 H 1.08004 * 119.87340 * 179.74167 * 10 9 8 32 32 H 0.97005 * 120.00117 * 149.99802 * 13 12 11 33 33 H 0.97002 * 120.00101 * 329.99949 * 13 12 11 34 34 H 1.07996 * 120.06261 * 179.97438 * 16 11 10 35 35 H 1.08003 * 120.12881 * 179.97438 * 17 6 5 36 36 H 0.97000 * 120.00224 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2760 -1.1727 -0.2648 5 6 4.6532 -1.1655 -0.2639 6 6 5.3707 0.0053 -0.0009 7 6 6.8535 -0.0282 -0.0098 8 6 7.5811 1.1331 0.2456 9 6 8.9604 1.0949 0.2412 10 6 9.6213 -0.0908 -0.0262 11 6 8.9046 -1.2448 -0.2860 12 16 9.7548 -2.7502 -0.6263 13 7 9.9906 -2.8206 -2.2638 14 8 11.0434 -2.6244 -0.0404 15 8 8.8541 -3.8012 -0.3049 16 6 7.5246 -1.2195 -0.2791 17 6 4.7158 1.1968 0.2684 18 6 3.3102 1.2320 0.2836 19 6 2.6271 2.4319 0.5609 20 1 1.6574 2.6151 0.1220 21 6 3.2058 3.3889 1.4069 22 7 2.7649 4.6189 1.4003 23 14 4.6072 2.9052 2.5434 24 1 5.9040 3.2252 1.8943 25 1 4.4929 3.6578 3.8185 26 1 4.5389 1.4479 2.8209 27 1 2.7425 -2.0887 -0.4710 28 1 5.1885 -2.0805 -0.4709 29 1 7.0661 2.0600 0.4509 30 1 9.5251 1.9931 0.4427 31 1 10.7010 -0.1151 -0.0327 32 1 10.7630 -3.2846 -2.6232 33 1 9.3564 -2.3978 -2.8638 34 1 6.9659 -2.1211 -0.4825 35 1 5.2829 2.0935 0.4702 36 1 3.1656 5.2809 1.9852 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240165663.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:55 Heat of formation + Delta-G solvation = -8.549759 kcal Electronic energy + Delta-G solvation = -24100.632250 eV Core-core repulsion = 20448.087893 eV Total energy + Delta-G solvation = -3652.544356 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -39.61000 -37.77878 -37.28610 -35.96506 -35.33851 -34.20909 -33.41750 -32.38065 -31.61761 -30.70225 -28.76346 -25.94728 -23.95680 -23.19024 -21.61509 -20.92883 -19.58762 -18.35743 -17.97827 -17.61203 -17.52410 -16.86018 -16.05211 -15.61476 -15.45739 -14.90931 -14.54599 -14.06588 -13.97211 -13.78549 -13.37344 -13.07309 -12.79533 -12.64334 -12.47296 -12.34712 -12.21794 -12.09349 -12.05240 -11.86338 -11.61921 -11.37149 -11.21921 -11.15079 -10.98774 -10.67535 -10.63870 -10.20453 -10.01415 -9.59011 -9.49996 -9.21404 -8.08637 -7.54776 -7.40235 -4.94849 0.24377 0.65578 0.96933 1.98059 2.33962 2.76428 2.92628 2.97300 3.03490 3.33126 3.58458 3.62294 3.74758 4.06635 4.29201 4.33152 4.75263 4.79298 4.97792 5.08954 5.15728 5.21066 5.33515 5.52245 5.68743 5.72447 5.73701 5.90260 6.07018 6.14968 6.20613 6.28996 6.49138 6.71191 6.76516 6.78366 6.84780 7.15198 7.23345 7.40951 7.59389 7.86859 8.13557 8.27136 8.63366 9.58642 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016060 B = 0.003798 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.006093 B = 7371.222981 C = 8745.220786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C 0.294 3.706 3 C -0.162 4.162 4 C -0.013 4.013 5 C -0.242 4.242 6 C 0.004 3.996 7 C -0.045 4.045 8 C -0.060 4.060 9 C -0.138 4.138 10 C -0.030 4.030 11 C -0.676 4.676 12 S 2.704 3.296 13 N -1.249 6.249 14 O -0.968 6.968 15 O -0.960 6.960 16 C -0.017 4.017 17 C -0.216 4.216 18 C 0.125 3.875 19 C -0.413 4.413 20 H 0.099 0.901 21 C 0.082 3.918 22 N -0.773 5.773 23 Si 0.906 3.094 24 H -0.263 1.263 25 H -0.281 1.281 26 H -0.234 1.234 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.136 0.864 30 H 0.132 0.868 31 H 0.138 0.862 32 H 0.419 0.581 33 H 0.418 0.582 34 H 0.148 0.852 35 H 0.112 0.888 36 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.090 -6.486 -4.721 18.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.171 5.171 2 C -0.016 4.016 3 C -0.168 4.168 4 C -0.034 4.034 5 C -0.261 4.261 6 C 0.003 3.997 7 C -0.046 4.046 8 C -0.078 4.078 9 C -0.156 4.156 10 C -0.049 4.049 11 C -0.764 4.764 12 S 2.793 3.207 13 N -0.923 5.923 14 O -0.957 6.957 15 O -0.950 6.950 16 C -0.036 4.036 17 C -0.235 4.235 18 C 0.120 3.880 19 C -0.440 4.440 20 H 0.117 0.883 21 C -0.142 4.142 22 N -0.393 5.393 23 Si 0.730 3.270 24 H -0.189 1.189 25 H -0.208 1.208 26 H -0.157 1.157 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.154 0.846 30 H 0.150 0.850 31 H 0.156 0.844 32 H 0.249 0.751 33 H 0.246 0.754 34 H 0.165 0.835 35 H 0.130 0.870 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 15.499 -6.816 -3.822 17.358 hybrid contribution 0.662 0.948 -0.053 1.157 sum 16.161 -5.868 -3.874 17.625 Atomic orbital electron populations 1.81051 1.12624 1.09676 1.13793 1.25660 0.92618 0.91704 0.91627 1.16934 0.83488 0.94515 1.21832 1.20524 0.93544 0.95229 0.94120 1.20197 0.93279 0.96833 1.15787 1.18336 0.89079 0.94239 0.98009 1.19239 0.93740 0.92919 0.98653 1.21862 0.94158 0.98684 0.93127 1.21221 0.94426 0.98282 1.01710 1.20878 0.99829 0.91127 0.93110 1.30467 1.05526 1.19863 1.20558 1.01442 0.73446 0.73609 0.72232 1.53143 1.38938 1.72855 1.27359 1.93582 1.39870 1.86740 1.75548 1.93620 1.66156 1.52860 1.82317 1.21137 0.91585 0.98615 0.92236 1.21028 0.93904 0.96498 1.12037 1.18349 0.90545 0.90518 0.88631 1.19678 1.05257 0.96929 1.22101 0.88286 1.26370 0.97331 0.93482 0.97001 1.69587 1.36750 1.02494 1.30515 0.86392 0.79572 0.82214 0.78784 1.18906 1.20786 1.15701 0.87276 0.87278 0.84590 0.84968 0.84383 0.75140 0.75447 0.83462 0.87025 0.89417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -11.53 18.54 41.84 0.78 -10.75 16 2 C 0.29 6.58 14.36 -22.47 -0.32 6.26 16 3 C -0.16 -3.43 5.95 -104.13 -0.62 -4.05 16 4 C -0.01 -0.24 9.74 -39.27 -0.38 -0.62 16 5 C -0.24 -4.17 9.37 -39.18 -0.37 -4.53 16 6 C 0.00 0.08 5.86 -105.03 -0.62 -0.54 16 7 C -0.04 -0.70 5.88 -104.90 -0.62 -1.31 16 8 C -0.06 -0.86 9.41 -39.24 -0.37 -1.23 16 9 C -0.14 -1.61 10.03 -39.63 -0.40 -2.01 16 10 C -0.03 -0.33 9.52 -39.52 -0.38 -0.71 16 11 C -0.68 -7.89 5.97 -39.63 -0.24 -8.12 16 12 S 2.70 27.80 6.28 -107.50 -0.68 27.12 16 13 N -1.25 -7.58 9.52 60.35 0.57 -7.00 16 14 O -0.97 -12.29 17.27 -57.17 -0.99 -13.27 16 15 O -0.96 -13.10 17.28 -57.17 -0.99 -14.09 16 16 C -0.02 -0.22 8.89 -39.24 -0.35 -0.57 16 17 C -0.22 -4.34 6.53 -38.55 -0.25 -4.59 16 18 C 0.13 2.79 5.25 -104.67 -0.55 2.24 16 19 C -0.41 -10.02 9.02 -37.85 -0.34 -10.37 16 20 H 0.10 2.63 7.66 -52.49 -0.40 2.23 16 21 C 0.08 1.90 5.42 -17.30 -0.09 1.81 16 22 N -0.77 -18.30 13.92 55.56 0.77 -17.53 16 23 Si 0.91 17.83 24.53 -169.99 -4.17 13.66 16 24 H -0.26 -4.67 6.04 56.52 0.34 -4.33 16 25 H -0.28 -5.43 7.11 56.52 0.40 -5.02 16 26 H -0.23 -4.77 6.85 56.52 0.39 -4.39 16 27 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 28 H 0.11 1.59 6.10 -52.48 -0.32 1.27 16 29 H 0.14 1.97 5.45 -52.48 -0.29 1.69 16 30 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.14 1.23 7.61 -52.48 -0.40 0.83 16 32 H 0.42 1.73 8.96 -34.47 -0.31 1.42 16 33 H 0.42 1.79 8.96 -34.47 -0.31 1.49 16 34 H 0.15 1.83 5.69 -52.49 -0.30 1.53 16 35 H 0.11 2.16 2.93 -52.48 -0.15 2.00 16 36 H 0.29 6.20 8.29 -40.82 -0.34 5.86 16 LS Contribution 326.28 15.07 4.92 4.92 Total: -1.00 -30.46 326.28 -8.20 -38.66 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -2.53 Total: 6.64 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: -5.89 Total: -28.35 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 2.12 Total: -35.29 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -1.98 Total: -27.36 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -4.17 Total: 13.66 kcal Atomic # 16 Polarization: 27.80 SS G_CDS: -0.68 Total: 27.12 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.46 -8.20 -38.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240165663.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.112 kcal (2) G-P(sol) polarization free energy of solvation -30.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds