Wall clock time and date at job start Tue Mar 31 2020 15:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 O 1.42099 * 110.54269 * 2 1 4 4 O 1.42100 * 110.54280 * 223.24660 * 2 1 3 5 5 C 1.76202 * 104.44525 * 111.62151 * 2 1 3 6 6 C 1.38321 * 119.48029 * 90.00456 * 5 2 1 7 7 C 1.38408 * 119.28819 * 179.97438 * 6 5 2 8 8 C 1.39808 * 118.30603 * 359.97438 * 7 6 5 9 9 C 1.48325 * 120.53852 * 180.02562 * 8 7 6 10 10 C 1.39810 * 119.53605 * 359.97438 * 9 8 7 11 11 C 1.37713 * 121.16985 * 179.97438 * 10 9 8 12 12 C 1.39572 * 120.18872 * 0.04765 * 11 10 9 13 13 C 1.43196 * 120.46127 * 179.97438 * 12 11 10 14 14 N 9.57721 * 141.57133 * 178.14427 * 5 1 2 15 15 C 1.46537 * 119.08507 * 359.97438 * 12 11 10 16 16 C 1.40843 * 120.55302 * 179.97438 * 15 12 11 17 17 H 1.07998 * 120.00054 * 332.71187 * 16 15 12 18 18 C 1.40235 * 119.99984 * 152.43688 * 16 15 12 19 19 N 1.30667 * 119.99687 * 163.04218 * 18 16 15 20 20 Si 1.86795 * 120.00027 * 343.04326 * 18 16 15 21 21 H 1.48500 * 109.47061 * 95.11684 * 20 18 16 22 22 H 1.48496 * 109.47232 * 215.11255 * 20 18 16 23 23 H 1.48495 * 109.47364 * 335.11899 * 20 18 16 24 24 C 1.38599 * 119.53537 * 180.25802 * 9 8 7 25 25 C 1.39345 * 118.92113 * 0.27590 * 8 7 6 26 26 N 1.31740 * 120.58805 * 359.45474 * 25 8 7 27 27 H 1.08997 * 109.47095 * 308.37644 * 1 2 3 28 28 H 1.08997 * 109.46542 * 68.37889 * 1 2 3 29 29 H 1.08995 * 109.46744 * 188.37712 * 1 2 3 30 30 H 1.08001 * 120.35770 * 0.02562 * 6 5 2 31 31 H 1.07999 * 120.84817 * 180.02562 * 7 6 5 32 32 H 1.08002 * 119.41501 * 359.97438 * 10 9 8 33 33 H 1.08001 * 119.90744 * 180.02562 * 11 10 9 34 34 H 0.96998 * 119.99518 * 179.97438 * 19 18 16 35 35 H 1.08007 * 120.13212 * 0.02628 * 24 9 8 36 36 H 1.07997 * 119.70691 * 179.70429 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9693 -0.9117 5 6 2.2536 -0.6287 1.5863 6 6 2.4235 -1.9910 1.7554 7 6 2.7693 -2.4805 3.0030 8 6 2.9346 -1.5691 4.0502 9 6 3.3054 -2.0395 5.4071 10 6 3.4896 -3.4063 5.6364 11 6 3.8347 -3.8798 6.8827 12 6 4.0066 -2.9938 7.9473 13 6 4.3648 -3.4798 9.2457 14 7 4.6438 -3.8661 10.2770 15 6 3.8155 -1.5591 7.7180 16 6 3.9806 -0.6377 8.7703 17 1 3.8121 -0.9477 9.7909 18 6 4.3694 0.6809 8.4931 19 7 4.2067 1.6131 9.3942 20 14 5.1197 1.1046 6.8358 21 1 4.0585 1.6044 5.9252 22 1 6.1536 2.1555 7.0146 23 1 5.7435 -0.1090 6.2500 24 6 3.4587 -1.1184 6.4314 25 6 2.7402 -0.2123 3.7997 26 7 2.4164 0.2071 2.5935 27 1 -0.3633 0.6380 0.8056 28 1 -0.3632 0.3787 -0.9554 29 1 -0.3632 -1.0167 0.1497 30 1 2.2886 -2.6654 0.9226 31 1 2.9087 -3.5394 3.1632 32 1 3.3590 -4.1031 4.8217 33 1 3.9723 -4.9399 7.0368 34 1 4.4760 2.5250 9.2026 35 1 3.3083 -0.0659 6.2410 36 1 2.8598 0.5024 4.6005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240811909.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:42 Heat of formation + Delta-G solvation = 14.397044 kcal Electronic energy + Delta-G solvation = -23970.317305 eV Core-core repulsion = 20318.767997 eV Total energy + Delta-G solvation = -3651.549308 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -40.32388 -38.11772 -37.25802 -36.09449 -35.47603 -34.37845 -33.00643 -32.23928 -30.97519 -29.86216 -29.11905 -26.11669 -24.55609 -23.91758 -21.67256 -21.16640 -19.49672 -18.30405 -17.91124 -17.74113 -16.68386 -16.45279 -16.17672 -15.58347 -15.14923 -15.00614 -14.31657 -14.20337 -13.81097 -13.66156 -13.51257 -13.44955 -13.23132 -13.09264 -12.91454 -12.32226 -12.23891 -12.15424 -12.12127 -11.88523 -11.78229 -11.41516 -11.36399 -11.21373 -11.12935 -10.86516 -10.34060 -10.13886 -10.02151 -9.69249 -9.53930 -9.50969 -8.19716 -7.75119 -7.47864 -5.02688 -0.20058 0.30796 1.12867 1.82801 2.25967 2.59438 2.76387 2.92702 2.99116 3.29564 3.55507 3.67868 3.72676 3.83497 3.99817 4.23307 4.36109 4.48138 4.66075 4.74424 4.82463 5.00637 5.02300 5.08130 5.12360 5.33866 5.36570 5.60733 5.73057 5.86482 5.96086 6.10552 6.31652 6.47689 6.64320 6.71037 7.02375 7.10995 7.27884 7.48101 7.59955 7.77644 8.03579 8.18147 8.56569 9.50455 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016961 B = 0.003571 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.436270 B = 7839.753186 C = 9111.848612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.647 4.647 2 S 2.513 3.487 3 O -0.919 6.919 4 O -0.937 6.937 5 C -0.455 4.455 6 C -0.084 4.084 7 C -0.092 4.092 8 C -0.016 4.016 9 C -0.006 4.006 10 C -0.238 4.238 11 C -0.013 4.013 12 C -0.159 4.159 13 C 0.293 3.707 14 N -0.490 5.490 15 C 0.120 3.880 16 C -0.402 4.402 17 H 0.101 0.899 18 C 0.080 3.920 19 N -0.765 5.765 20 Si 0.904 3.096 21 H -0.258 1.258 22 H -0.279 1.279 23 H -0.234 1.234 24 C -0.206 4.206 25 C 0.078 3.922 26 N -0.390 5.390 27 H 0.135 0.865 28 H 0.133 0.867 29 H 0.131 0.869 30 H 0.152 0.848 31 H 0.151 0.849 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.298 0.702 35 H 0.113 0.887 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.280 -2.243 -17.102 18.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.797 4.797 2 S 2.689 3.311 3 O -0.916 6.916 4 O -0.933 6.933 5 C -0.674 4.674 6 C -0.105 4.105 7 C -0.118 4.118 8 C -0.018 4.018 9 C -0.007 4.007 10 C -0.258 4.258 11 C -0.034 4.034 12 C -0.165 4.165 13 C -0.018 4.018 14 N -0.169 5.169 15 C 0.114 3.886 16 C -0.428 4.428 17 H 0.119 0.881 18 C -0.145 4.145 19 N -0.385 5.385 20 Si 0.729 3.271 21 H -0.184 1.184 22 H -0.206 1.206 23 H -0.157 1.157 24 C -0.224 4.224 25 C -0.084 4.084 26 N -0.098 5.098 27 H 0.154 0.846 28 H 0.151 0.849 29 H 0.150 0.850 30 H 0.170 0.830 31 H 0.168 0.832 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.109 0.891 35 H 0.131 0.869 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -6.385 -1.424 -16.137 17.413 hybrid contribution -0.147 -0.647 0.112 0.673 sum -6.532 -2.070 -16.025 17.428 Atomic orbital electron populations 1.30183 1.25422 1.12100 1.12020 1.05137 0.77987 0.74680 0.73284 1.93594 1.76873 1.35887 1.85262 1.93597 1.77737 1.62311 1.59677 1.32957 1.15296 0.99422 1.19692 1.21882 0.95152 0.94870 0.98626 1.21855 0.97223 1.01030 0.91666 1.20459 0.92360 0.94271 0.94690 1.18242 0.98992 0.94078 0.89422 1.20098 1.15446 0.93294 0.96940 1.20502 0.94073 0.97330 0.91491 1.16880 1.19353 0.93290 0.86943 1.25644 0.91852 0.91711 0.92577 1.81065 1.13805 1.10523 1.11489 1.18321 0.88754 0.89999 0.91535 1.19759 1.34259 0.92568 0.96227 0.88136 1.26428 0.93113 0.95270 0.99730 1.69569 1.29983 1.03206 1.35703 0.86432 0.79919 0.80376 0.80368 1.18431 1.20554 1.15652 1.21056 1.10092 0.97834 0.93465 1.23412 0.96444 0.94340 0.94250 1.67698 1.06481 1.36711 0.98923 0.84633 0.84890 0.85040 0.82991 0.83178 0.87414 0.87240 0.89120 0.86935 0.81319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.53 10.80 101.05 1.09 -2.44 16 2 S 2.51 25.57 5.86 -107.50 -0.63 24.94 16 3 O -0.92 -13.09 17.72 -57.54 -1.02 -14.11 16 4 O -0.94 -11.17 17.09 -57.54 -0.98 -12.16 16 5 C -0.45 -5.85 6.53 -17.49 -0.11 -5.97 16 6 C -0.08 -0.97 9.49 -39.49 -0.37 -1.34 16 7 C -0.09 -1.16 9.52 -38.93 -0.37 -1.53 16 8 C -0.02 -0.24 5.89 -104.75 -0.62 -0.86 16 9 C -0.01 -0.10 5.86 -105.03 -0.62 -0.71 16 10 C -0.24 -3.83 9.38 -39.19 -0.37 -4.19 16 11 C -0.01 -0.22 9.74 -39.28 -0.38 -0.61 16 12 C -0.16 -3.24 5.95 -104.13 -0.62 -3.86 16 13 C 0.29 6.34 14.32 -22.47 -0.32 6.02 16 14 N -0.49 -11.17 18.54 41.84 0.78 -10.39 16 15 C 0.12 2.59 5.33 -104.68 -0.56 2.03 16 16 C -0.40 -9.53 9.08 -37.85 -0.34 -9.87 16 17 H 0.10 2.61 7.59 -52.49 -0.40 2.21 16 18 C 0.08 1.82 5.44 -17.30 -0.09 1.73 16 19 N -0.76 -17.84 13.92 55.56 0.77 -17.07 16 20 Si 0.90 17.76 24.42 -169.99 -4.15 13.61 16 21 H -0.26 -4.69 5.76 56.52 0.33 -4.36 16 22 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 23 H -0.23 -4.67 6.73 56.52 0.38 -4.29 16 24 C -0.21 -4.04 6.47 -38.56 -0.25 -4.29 16 25 C 0.08 1.26 10.58 -17.18 -0.18 1.08 16 26 N -0.39 -6.08 10.02 -12.16 -0.12 -6.20 16 27 H 0.14 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.13 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.13 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.15 1.25 7.55 -52.49 -0.40 0.86 16 31 H 0.15 1.50 6.25 -52.49 -0.33 1.17 16 32 H 0.11 1.39 6.16 -52.49 -0.32 1.06 16 33 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.30 6.18 8.29 -40.82 -0.34 5.85 16 35 H 0.11 2.16 2.63 -52.48 -0.14 2.02 16 36 H 0.17 2.74 5.21 -52.49 -0.27 2.47 16 LS Contribution 327.71 15.07 4.94 4.94 Total: -1.00 -30.43 327.71 -7.32 -37.75 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -2.78 Total: 3.51 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: -4.12 Total: -24.82 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 1.43 Total: -33.66 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -2.00 Total: -26.26 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -4.15 Total: 13.61 kcal Atomic # 16 Polarization: 25.57 SS G_CDS: -0.63 Total: 24.94 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.43 -7.32 -37.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240811909.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.143 kcal (2) G-P(sol) polarization free energy of solvation -30.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds