Wall clock time and date at job start Tue Mar 31 2020 15:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 O 1.42099 * 110.54269 * 2 1 4 4 O 1.42100 * 110.54280 * 223.24660 * 2 1 3 5 5 C 1.76202 * 104.44525 * 111.62151 * 2 1 3 6 6 C 1.38321 * 119.48029 * 90.00456 * 5 2 1 7 7 C 1.38408 * 119.28819 * 179.97438 * 6 5 2 8 8 C 1.39808 * 118.30603 * 359.97438 * 7 6 5 9 9 C 1.48325 * 120.53852 * 180.02562 * 8 7 6 10 10 C 1.39810 * 119.53605 * 359.97438 * 9 8 7 11 11 C 1.37713 * 121.16985 * 179.97438 * 10 9 8 12 12 C 1.39572 * 120.18872 * 0.04765 * 11 10 9 13 13 C 1.43196 * 120.46127 * 179.97438 * 12 11 10 14 14 N 9.57721 * 141.57133 * 178.14427 * 5 1 2 15 15 C 1.46537 * 119.08507 * 359.97438 * 12 11 10 16 16 C 1.40843 * 120.55302 * 179.97438 * 15 12 11 17 17 H 1.07998 * 120.00054 * 332.71187 * 16 15 12 18 18 C 1.40235 * 119.99984 * 152.43688 * 16 15 12 19 19 N 1.30667 * 119.99687 * 163.04218 * 18 16 15 20 20 Si 1.86795 * 120.00027 * 343.04326 * 18 16 15 21 21 H 1.48500 * 109.47061 * 95.11684 * 20 18 16 22 22 H 1.48496 * 109.47232 * 215.11255 * 20 18 16 23 23 H 1.48495 * 109.47364 * 335.11899 * 20 18 16 24 24 C 1.38599 * 119.53537 * 180.25802 * 9 8 7 25 25 C 1.39345 * 118.92113 * 0.27590 * 8 7 6 26 26 N 1.31740 * 120.58805 * 359.45474 * 25 8 7 27 27 H 1.08997 * 109.47095 * 308.37644 * 1 2 3 28 28 H 1.08997 * 109.46542 * 68.37889 * 1 2 3 29 29 H 1.08995 * 109.46744 * 188.37712 * 1 2 3 30 30 H 1.08001 * 120.35770 * 0.02562 * 6 5 2 31 31 H 1.07999 * 120.84817 * 180.02562 * 7 6 5 32 32 H 1.08002 * 119.41501 * 359.97438 * 10 9 8 33 33 H 1.08001 * 119.90744 * 180.02562 * 11 10 9 34 34 H 0.96998 * 119.99518 * 179.97438 * 19 18 16 35 35 H 1.08007 * 120.13212 * 0.02628 * 24 9 8 36 36 H 1.07997 * 119.70691 * 179.70429 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9693 -0.9117 5 6 2.2536 -0.6287 1.5863 6 6 2.4235 -1.9910 1.7554 7 6 2.7693 -2.4805 3.0030 8 6 2.9346 -1.5691 4.0502 9 6 3.3054 -2.0395 5.4071 10 6 3.4896 -3.4063 5.6364 11 6 3.8347 -3.8798 6.8827 12 6 4.0066 -2.9938 7.9473 13 6 4.3648 -3.4798 9.2457 14 7 4.6438 -3.8661 10.2770 15 6 3.8155 -1.5591 7.7180 16 6 3.9806 -0.6377 8.7703 17 1 3.8121 -0.9477 9.7909 18 6 4.3694 0.6809 8.4931 19 7 4.2067 1.6131 9.3942 20 14 5.1197 1.1046 6.8358 21 1 4.0585 1.6044 5.9252 22 1 6.1536 2.1555 7.0146 23 1 5.7435 -0.1090 6.2500 24 6 3.4587 -1.1184 6.4314 25 6 2.7402 -0.2123 3.7997 26 7 2.4164 0.2071 2.5935 27 1 -0.3633 0.6380 0.8056 28 1 -0.3632 0.3787 -0.9554 29 1 -0.3632 -1.0167 0.1497 30 1 2.2886 -2.6654 0.9226 31 1 2.9087 -3.5394 3.1632 32 1 3.3590 -4.1031 4.8217 33 1 3.9723 -4.9399 7.0368 34 1 4.4760 2.5250 9.2026 35 1 3.3083 -0.0659 6.2410 36 1 2.8598 0.5024 4.6005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240811909.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:41 Heat of formation + Delta-G solvation = -7.456086 kcal Electronic energy + Delta-G solvation = -23971.264928 eV Core-core repulsion = 20318.767997 eV Total energy + Delta-G solvation = -3652.496931 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.42845 -39.58261 -38.12961 -37.17530 -36.97652 -35.96549 -34.30603 -33.32336 -32.48946 -30.61203 -30.16349 -27.66999 -25.78141 -25.08716 -22.99039 -22.65291 -20.41365 -19.66803 -19.33553 -18.89088 -17.79242 -17.54896 -17.20377 -16.60948 -16.42327 -16.18328 -15.82156 -15.27718 -15.13818 -14.79939 -14.66582 -14.57552 -14.50204 -13.96620 -13.91536 -13.78217 -13.55382 -13.49265 -13.30818 -13.13834 -13.02498 -12.96613 -12.73443 -12.40831 -12.32994 -11.93740 -11.86157 -11.68553 -11.25832 -11.07418 -10.69765 -10.61334 -9.72480 -9.18217 -9.13818 -6.74341 -0.99254 -0.77610 0.10851 0.40806 0.75363 1.18201 1.32417 1.40937 1.79369 1.93197 1.95749 2.06229 2.51495 2.58454 2.96092 3.03440 3.39477 3.43118 3.52007 3.65066 3.80982 3.87890 4.03689 4.11330 4.14272 4.33436 4.47723 4.57377 4.61037 4.73582 4.78812 4.98961 5.00885 5.09984 5.21723 5.39685 5.57050 5.63114 5.78424 5.95070 6.09732 6.41172 6.50654 6.53742 6.85266 7.91517 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016961 B = 0.003571 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.436270 B = 7839.753186 C = 9111.848612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.617 4.617 2 S 2.516 3.484 3 O -0.969 6.969 4 O -0.956 6.956 5 C -0.456 4.456 6 C -0.081 4.081 7 C -0.075 4.075 8 C -0.043 4.043 9 C 0.004 3.996 10 C -0.210 4.210 11 C -0.007 4.007 12 C -0.176 4.176 13 C 0.300 3.700 14 N -0.520 5.520 15 C 0.117 3.883 16 C -0.451 4.451 17 H 0.057 0.943 18 C 0.055 3.945 19 N -0.815 5.815 20 Si 0.947 3.053 21 H -0.241 1.241 22 H -0.276 1.276 23 H -0.239 1.239 24 C -0.228 4.228 25 C 0.061 3.939 26 N -0.417 5.417 27 H 0.144 0.856 28 H 0.162 0.838 29 H 0.162 0.838 30 H 0.192 0.808 31 H 0.187 0.813 32 H 0.158 0.842 33 H 0.146 0.854 34 H 0.304 0.696 35 H 0.111 0.889 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.966 -5.096 -21.970 24.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.772 4.772 2 S 2.695 3.305 3 O -0.967 6.967 4 O -0.952 6.952 5 C -0.674 4.674 6 C -0.101 4.101 7 C -0.101 4.101 8 C -0.045 4.045 9 C 0.002 3.998 10 C -0.228 4.228 11 C -0.028 4.028 12 C -0.182 4.182 13 C -0.010 4.010 14 N -0.199 5.199 15 C 0.112 3.888 16 C -0.479 4.479 17 H 0.076 0.924 18 C -0.166 4.166 19 N -0.437 5.437 20 Si 0.768 3.232 21 H -0.166 1.166 22 H -0.203 1.203 23 H -0.162 1.162 24 C -0.247 4.247 25 C -0.100 4.100 26 N -0.126 5.126 27 H 0.162 0.838 28 H 0.181 0.819 29 H 0.181 0.819 30 H 0.209 0.791 31 H 0.204 0.796 32 H 0.176 0.824 33 H 0.163 0.837 34 H 0.115 0.885 35 H 0.128 0.872 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.025 -4.291 -20.972 22.861 hybrid contribution 0.191 -0.007 1.263 1.278 sum -7.835 -4.298 -19.708 21.640 Atomic orbital electron populations 1.29979 1.18366 1.14683 1.14161 1.05090 0.80492 0.73094 0.71872 1.93541 1.79727 1.37964 1.85419 1.93566 1.79956 1.62267 1.59457 1.33611 1.13629 1.00342 1.19790 1.22364 0.93565 0.94705 0.99444 1.22270 0.94880 1.02134 0.90835 1.20341 0.95069 0.94592 0.94506 1.18530 0.96906 0.94431 0.89908 1.20711 1.11161 0.93317 0.97650 1.20925 0.92582 0.98629 0.90653 1.17219 1.20153 0.93437 0.87354 1.26004 0.91199 0.90995 0.92815 1.81043 1.14968 1.11741 1.12117 1.18449 0.88073 0.90352 0.91966 1.19577 1.39145 0.94207 0.94920 0.92441 1.26955 0.92787 0.94754 1.02069 1.69600 1.32831 1.03816 1.37499 0.85808 0.79747 0.79906 0.77709 1.16569 1.20251 1.16176 1.21080 1.11567 0.98628 0.93388 1.23324 0.97358 0.94843 0.94513 1.67698 1.07656 1.37953 0.99265 0.83796 0.81949 0.81934 0.79087 0.79608 0.82430 0.83667 0.88500 0.87177 0.82809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -3.44 10.80 113.37 1.22 -2.21 16 2 S 2.52 43.45 5.86 -56.49 -0.33 43.12 16 3 O -0.97 -26.50 17.72 -127.65 -2.26 -28.76 16 4 O -0.96 -19.47 17.09 -127.65 -2.18 -21.65 16 5 C -0.46 -10.26 6.53 84.70 0.55 -9.71 16 6 C -0.08 -1.43 9.49 22.33 0.21 -1.21 16 7 C -0.08 -1.48 9.52 22.69 0.22 -1.26 16 8 C -0.04 -1.20 5.89 -19.95 -0.12 -1.32 16 9 C 0.00 0.13 5.86 -20.13 -0.12 0.01 16 10 C -0.21 -5.66 9.38 22.53 0.21 -5.45 16 11 C -0.01 -0.23 9.74 22.47 0.22 -0.01 16 12 C -0.18 -7.11 5.95 -19.55 -0.12 -7.23 16 13 C 0.30 13.26 14.32 88.33 1.26 14.53 16 14 N -0.52 -24.38 18.54 19.00 0.35 -24.03 16 15 C 0.12 5.22 5.33 -19.90 -0.11 5.12 16 16 C -0.45 -23.15 9.08 23.39 0.21 -22.94 16 17 H 0.06 3.32 7.59 -2.91 -0.02 3.30 16 18 C 0.05 2.67 5.44 85.35 0.46 3.14 16 19 N -0.81 -41.25 13.92 21.88 0.30 -40.95 16 20 Si 0.95 38.14 24.42 68.60 1.68 39.82 16 21 H -0.24 -8.85 5.76 99.48 0.57 -8.28 16 22 H -0.28 -10.78 7.11 99.48 0.71 -10.08 16 23 H -0.24 -9.62 6.73 99.48 0.67 -8.95 16 24 C -0.23 -8.95 6.47 22.93 0.15 -8.80 16 25 C 0.06 1.90 10.58 84.97 0.90 2.79 16 26 N -0.42 -12.34 10.02 -192.39 -1.93 -14.27 16 27 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.16 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.16 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.19 1.87 7.55 -2.91 -0.02 1.85 16 31 H 0.19 2.20 6.25 -2.91 -0.02 2.19 16 32 H 0.16 2.76 6.16 -2.91 -0.02 2.74 16 33 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 34 H 0.30 13.68 8.29 -92.71 -0.77 12.91 16 35 H 0.11 4.34 2.63 -2.91 -0.01 4.33 16 36 H 0.15 5.08 5.21 -2.91 -0.02 5.07 16 Total: -1.00 -73.64 327.71 1.79 -71.85 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 1.00 Total: 9.44 kcal Atomic # 6 Polarization: -39.73 SS G_CDS: 5.17 Total: -34.56 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: -1.27 Total: -79.25 kcal Atomic # 8 Polarization: -45.97 SS G_CDS: -4.44 Total: -50.41 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 1.68 Total: 39.82 kcal Atomic # 16 Polarization: 43.45 SS G_CDS: -0.33 Total: 43.12 kcal Total: -73.64 1.79 -71.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240811909.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.395 kcal (2) G-P(sol) polarization free energy of solvation -73.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds