Wall clock time and date at job start Tue Mar 31 2020 15:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42104 * 110.54170 * 2 1 4 4 O 1.42102 * 110.54333 * 223.24891 * 2 1 3 5 5 C 1.76201 * 104.44899 * 111.62168 * 2 1 3 6 6 C 1.38377 * 119.45708 * 90.00278 * 5 2 1 7 7 C 1.38344 * 119.30753 * 179.97438 * 6 5 2 8 8 C 1.40003 * 118.29035 * 0.02562 * 7 6 5 9 9 C 1.48032 * 120.55859 * 179.97438 * 8 7 6 10 10 C 1.39969 * 119.49684 * 359.97438 * 9 8 7 11 11 C 1.36021 * 121.19163 * 179.97438 * 10 9 8 12 12 C 1.41037 * 120.10533 * 0.04670 * 11 10 9 13 13 C 1.40457 * 120.48544 * 179.97438 * 12 11 10 14 14 H 1.07993 * 120.00086 * 154.64071 * 13 12 11 15 15 C 1.40314 * 120.00047 * 334.63917 * 13 12 11 16 16 N 1.30635 * 119.99716 * 334.61936 * 15 13 12 17 17 Si 1.86802 * 119.99894 * 154.61715 * 15 13 12 18 18 H 1.48500 * 109.46614 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47176 * 299.99989 * 17 15 13 20 20 H 1.48499 * 109.46822 * 59.99988 * 17 15 13 21 21 C 1.46637 * 119.02463 * 0.25173 * 12 11 10 22 22 C 1.43198 * 120.56387 * 179.70505 * 21 12 11 23 23 N 9.89550 * 103.28195 * 89.19992 * 2 1 3 24 24 C 1.39099 * 118.86229 * 359.40183 * 21 12 11 25 25 C 1.39556 * 118.88592 * 0.24787 * 8 7 6 26 26 N 1.31706 * 120.56050 * 359.49702 * 25 8 7 27 27 H 1.09007 * 109.46967 * 308.37076 * 1 2 3 28 28 H 1.08996 * 109.47658 * 68.37366 * 1 2 3 29 29 H 1.08998 * 109.46963 * 188.38094 * 1 2 3 30 30 H 1.08000 * 120.35108 * 0.02562 * 6 5 2 31 31 H 1.07995 * 120.85466 * 180.02562 * 7 6 5 32 32 H 1.07996 * 119.40201 * 359.97438 * 10 9 8 33 33 H 1.08001 * 119.94052 * 180.02562 * 11 10 9 34 34 H 0.97000 * 120.00088 * 354.18066 * 16 15 13 35 35 H 1.08003 * 120.09448 * 180.29054 * 24 21 12 36 36 H 1.07999 * 119.72088 * 179.72405 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9117 5 6 2.2536 -0.6287 1.5862 6 6 2.4235 -1.9916 1.7548 7 6 2.7692 -2.4819 3.0015 8 6 2.9339 -1.5698 4.0508 9 6 3.3029 -2.0395 5.4053 10 6 3.4871 -3.4081 5.6337 11 6 3.8269 -3.8774 6.8643 12 6 3.9996 -2.9818 7.9401 13 6 4.3500 -3.4578 9.2143 14 1 4.8685 -2.8126 9.9079 15 6 4.0262 -4.7715 9.5860 16 7 3.0196 -5.3814 9.0191 17 14 5.0347 -5.6483 10.8913 18 1 4.4921 -7.0146 11.1009 19 1 6.4484 -5.7395 10.4462 20 1 4.9647 -4.8875 12.1647 21 6 3.8020 -1.5471 7.7102 22 6 3.9625 -0.6093 8.7804 23 7 4.0874 0.1345 9.6299 24 6 3.4621 -1.1123 6.4334 25 6 2.7387 -0.2110 3.7998 26 7 2.4147 0.2075 2.5938 27 1 -0.3633 0.6380 0.8058 28 1 -0.3634 0.3787 -0.9553 29 1 -0.3633 -1.0167 0.1498 30 1 2.2884 -2.6656 0.9218 31 1 2.9085 -3.5408 3.1611 32 1 3.3570 -4.1040 4.8182 33 1 3.9644 -4.9376 7.0179 34 1 2.4447 -4.8997 8.4041 35 1 3.3164 -0.0596 6.2407 36 1 2.8578 0.5039 4.6005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240812398.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:45 Heat of formation + Delta-G solvation = -17.731087 kcal Electronic energy + Delta-G solvation = -23543.175433 eV Core-core repulsion = 19890.232944 eV Total energy + Delta-G solvation = -3652.942489 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.23682 -39.65795 -38.10271 -37.19317 -36.95576 -36.46699 -33.89217 -33.06191 -31.90212 -30.70433 -30.21912 -27.59833 -25.43289 -24.75267 -23.59393 -22.44522 -20.38891 -20.22143 -19.01769 -18.83942 -17.71000 -17.19337 -16.98340 -16.49183 -16.35588 -16.09396 -15.78495 -15.35312 -15.14739 -14.78667 -14.70551 -14.46059 -14.26721 -13.96936 -13.92543 -13.70142 -13.63065 -13.53048 -13.15395 -13.12552 -13.01042 -12.88793 -12.60547 -12.26454 -12.03127 -11.94382 -11.76723 -11.67657 -11.28806 -10.95073 -10.60043 -10.52097 -9.84802 -9.55740 -9.23094 -6.75461 -0.88216 -0.54117 0.23011 0.28824 0.85907 1.48791 1.57311 1.77790 1.86402 1.88955 2.13441 2.18863 2.47123 2.65875 3.04306 3.08639 3.35330 3.42026 3.64806 3.82425 3.89861 4.00035 4.09092 4.12770 4.16060 4.34521 4.44886 4.61306 4.76737 4.79702 4.87527 4.97106 5.11067 5.14670 5.36334 5.43305 5.52146 5.65747 5.75174 5.88029 6.01251 6.36797 6.48195 6.68735 6.80502 7.69126 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.024367 B = 0.002626 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.804022 B =10659.458743 C =11498.779528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.619 4.619 2 S 2.519 3.481 3 O -0.971 6.971 4 O -0.964 6.964 5 C -0.485 4.485 6 C -0.073 4.073 7 C -0.122 4.122 8 C 0.012 3.988 9 C -0.218 4.218 10 C -0.024 4.024 11 C -0.225 4.225 12 C 0.113 3.887 13 C -0.479 4.479 14 H 0.075 0.925 15 C 0.012 3.988 16 N -0.759 5.759 17 Si 1.108 2.892 18 H -0.260 1.260 19 H -0.257 1.257 20 H -0.266 1.266 21 C -0.203 4.203 22 C 0.300 3.700 23 N -0.519 5.519 24 C 0.019 3.981 25 C 0.042 3.958 26 N -0.408 5.408 27 H 0.144 0.856 28 H 0.162 0.838 29 H 0.158 0.842 30 H 0.178 0.822 31 H 0.164 0.836 32 H 0.135 0.865 33 H 0.113 0.887 34 H 0.300 0.700 35 H 0.129 0.871 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.588 -1.420 -13.939 15.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.774 4.774 2 S 2.699 3.301 3 O -0.968 6.968 4 O -0.961 6.961 5 C -0.702 4.702 6 C -0.093 4.093 7 C -0.148 4.148 8 C 0.010 3.990 9 C -0.220 4.220 10 C -0.042 4.042 11 C -0.244 4.244 12 C 0.107 3.893 13 C -0.504 4.504 14 H 0.093 0.907 15 C -0.212 4.212 16 N -0.378 5.378 17 Si 0.924 3.076 18 H -0.184 1.184 19 H -0.181 1.181 20 H -0.191 1.191 21 C -0.209 4.209 22 C -0.009 4.009 23 N -0.198 5.198 24 C -0.002 4.002 25 C -0.121 4.121 26 N -0.116 5.116 27 H 0.163 0.837 28 H 0.180 0.820 29 H 0.176 0.824 30 H 0.195 0.805 31 H 0.182 0.818 32 H 0.153 0.847 33 H 0.131 0.869 34 H 0.114 0.886 35 H 0.147 0.853 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -5.808 -0.598 -12.692 13.971 hybrid contribution -0.300 0.262 0.204 0.448 sum -6.108 -0.336 -12.488 13.906 Atomic orbital electron populations 1.29987 1.18895 1.14404 1.14084 1.04845 0.80272 0.72984 0.72010 1.93523 1.79664 1.37976 1.85675 1.93550 1.79969 1.62427 1.60111 1.33200 1.17300 0.99889 1.19854 1.22151 0.93334 0.94890 0.98957 1.22021 0.99470 1.01493 0.91826 1.20104 0.91032 0.94402 0.93508 1.17787 1.19290 0.93274 0.91622 1.20753 0.92889 0.94221 0.96378 1.20792 1.11911 0.98846 0.92881 1.18810 0.87258 0.89679 0.93553 1.21127 1.29240 1.00351 0.99699 0.90683 1.28534 0.96552 0.94834 1.01322 1.70496 1.08550 1.40760 1.17996 0.83076 0.75466 0.76215 0.72807 1.18407 1.18087 1.19084 1.16844 1.23848 0.90111 0.90121 1.25896 0.91042 0.91619 0.92368 1.81043 1.15145 1.12413 1.11189 1.20953 0.90517 0.98798 0.89882 1.23249 0.99977 0.94353 0.94535 1.67583 1.06873 1.37740 0.99413 0.83717 0.82031 0.82382 0.80472 0.81850 0.84697 0.86894 0.88614 0.85330 0.81464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -4.93 10.80 113.37 1.22 -3.71 16 2 S 2.52 49.93 5.86 -56.49 -0.33 49.60 16 3 O -0.97 -28.16 17.73 -127.65 -2.26 -30.42 16 4 O -0.96 -22.83 17.09 -127.65 -2.18 -25.01 16 5 C -0.49 -12.19 6.53 84.71 0.55 -11.64 16 6 C -0.07 -1.62 9.49 22.33 0.21 -1.41 16 7 C -0.12 -3.01 9.52 22.72 0.22 -2.79 16 8 C 0.01 0.35 5.90 -19.93 -0.12 0.23 16 9 C -0.22 -7.25 5.88 -19.99 -0.12 -7.36 16 10 C -0.02 -0.79 9.31 22.17 0.21 -0.58 16 11 C -0.23 -8.84 7.88 22.44 0.18 -8.66 16 12 C 0.11 4.93 5.46 -19.86 -0.11 4.82 16 13 C -0.48 -21.69 8.48 23.32 0.20 -21.49 16 14 H 0.08 3.54 7.45 -2.91 -0.02 3.51 16 15 C 0.01 0.48 4.95 85.38 0.42 0.91 16 16 N -0.76 -32.71 12.31 21.89 0.27 -32.44 16 17 Si 1.11 35.86 30.01 68.60 2.06 37.92 16 18 H -0.26 -8.12 7.11 99.48 0.71 -7.41 16 19 H -0.26 -7.85 7.11 99.48 0.71 -7.14 16 20 H -0.27 -8.43 7.11 99.48 0.71 -7.72 16 21 C -0.20 -8.50 5.93 -19.63 -0.12 -8.62 16 22 C 0.30 13.27 14.30 88.33 1.26 14.54 16 23 N -0.52 -23.87 18.54 19.00 0.35 -23.52 16 24 C 0.02 0.69 9.13 22.75 0.21 0.90 16 25 C 0.04 1.25 10.59 85.03 0.90 2.15 16 26 N -0.41 -12.25 10.02 -192.18 -1.93 -14.18 16 27 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.16 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.16 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.18 2.77 7.55 -2.91 -0.02 2.75 16 31 H 0.16 3.20 6.25 -2.91 -0.02 3.18 16 32 H 0.14 3.56 6.16 -2.91 -0.02 3.55 16 33 H 0.11 4.51 6.48 -2.91 -0.02 4.49 16 34 H 0.30 13.16 6.68 -92.71 -0.62 12.55 16 35 H 0.13 4.00 6.16 -2.91 -0.02 3.99 16 36 H 0.17 4.58 6.17 -2.91 -0.02 4.56 16 Total: -1.00 -64.90 334.35 2.41 -62.49 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 1.31 Total: 18.31 kcal Atomic # 6 Polarization: -47.86 SS G_CDS: 5.12 Total: -42.74 kcal Atomic # 7 Polarization: -68.84 SS G_CDS: -1.30 Total: -70.14 kcal Atomic # 8 Polarization: -50.99 SS G_CDS: -4.44 Total: -55.43 kcal Atomic # 14 Polarization: 35.86 SS G_CDS: 2.06 Total: 37.92 kcal Atomic # 16 Polarization: 49.93 SS G_CDS: -0.33 Total: 49.60 kcal Total: -64.90 2.41 -62.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240812398.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.763 kcal (2) G-P(sol) polarization free energy of solvation -64.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds