Wall clock time and date at job start Tue Mar 31 2020 14:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36220 * 120.05626 * 2 1 4 4 C 1.40000 * 120.11431 * 179.97438 * 3 2 1 5 5 C 1.47827 * 119.89094 * 180.02562 * 4 3 2 6 6 C 1.39873 * 120.13033 * 294.72407 * 5 4 3 7 7 F 1.35100 * 120.06668 * 359.97438 * 6 5 4 8 8 C 1.38266 * 119.86426 * 179.74314 * 6 5 4 9 9 F 1.35096 * 119.93463 * 180.25937 * 8 6 5 10 10 C 1.38754 * 120.13419 * 0.50762 * 8 6 5 11 11 F 1.35095 * 119.87077 * 179.74203 * 10 8 6 12 12 C 1.38761 * 120.26543 * 359.76969 * 10 8 6 13 13 F 1.35095 * 119.93214 * 179.97438 * 12 10 8 14 14 C 1.38268 * 120.12905 * 359.97438 * 12 10 8 15 15 F 1.35102 * 120.06241 * 180.02562 * 14 12 10 16 16 C 1.40049 * 120.22306 * 0.02562 * 4 3 2 17 17 C 1.36185 * 120.11318 * 359.72125 * 16 4 3 18 18 C 1.40939 * 120.05645 * 179.97438 * 2 1 3 19 19 C 1.40979 * 120.11081 * 0.02562 * 18 2 1 20 20 H 1.08000 * 120.00583 * 26.83874 * 19 18 2 21 21 C 1.39970 * 120.00007 * 206.83659 * 19 18 2 22 22 N 1.30829 * 119.99898 * 16.46284 * 21 19 18 23 23 Si 1.86795 * 120.00117 * 196.45871 * 21 19 18 24 24 H 1.48504 * 109.47444 * 265.19181 * 23 21 19 25 25 H 1.48500 * 109.47153 * 25.19452 * 23 21 19 26 26 H 1.48505 * 109.46916 * 145.19213 * 23 21 19 27 27 H 1.09003 * 109.46706 * 270.02533 * 1 2 3 28 28 H 1.09002 * 109.47078 * 30.02072 * 1 2 3 29 29 H 1.08994 * 109.47207 * 150.01897 * 1 2 3 30 30 H 1.08000 * 119.94694 * 359.97438 * 3 2 1 31 31 H 1.07999 * 119.94352 * 179.97438 * 16 4 3 32 32 H 1.07997 * 120.05971 * 180.29725 * 17 16 4 33 33 H 0.96997 * 120.00369 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1893 1.1790 0.0000 4 6 3.5893 1.1804 0.0005 5 6 4.3247 2.4628 0.0011 6 6 4.2355 3.3238 -1.0976 7 9 3.4769 2.9853 -2.1630 8 6 4.9214 4.5243 -1.0890 9 9 4.8320 5.3594 -2.1472 10 6 5.7054 4.8708 0.0021 11 9 6.3775 6.0428 0.0027 12 6 5.8025 4.0182 1.0926 13 9 6.5682 4.3620 2.1511 14 6 5.1170 2.8174 1.0978 15 9 5.2120 1.9885 2.1604 16 6 4.2955 -0.0290 0.0005 17 6 3.6227 -1.2130 0.0058 18 6 2.2129 -1.2199 0.0005 19 6 1.5116 -2.4428 0.0005 20 1 0.5192 -2.4963 -0.4221 21 6 2.1015 -3.5879 0.5483 22 7 3.1399 -3.4757 1.3362 23 14 1.4061 -5.2763 0.1544 24 1 0.4565 -5.6819 1.2216 25 1 0.6952 -5.2272 -1.1484 26 1 2.5141 -6.2621 0.0768 27 1 -0.3633 0.0005 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8901 -0.5135 30 1 1.6493 2.1144 -0.0004 31 1 5.3754 -0.0226 0.0005 32 1 4.1681 -2.1451 0.0106 33 1 3.5490 -4.2691 1.7155 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241408427.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:13 Heat of formation + Delta-G solvation = -182.684020 kcal Electronic energy + Delta-G solvation = -27156.271209 eV Core-core repulsion = 22368.185947 eV Total energy + Delta-G solvation = -4788.085263 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.98415 -49.63312 -49.12005 -48.60477 -48.31999 -38.81250 -37.62625 -34.11297 -32.31690 -30.80901 -30.01518 -28.96121 -26.41738 -25.28218 -23.30356 -23.22769 -21.03237 -19.91543 -18.83497 -18.69986 -18.02086 -17.43273 -17.22983 -16.65659 -16.43407 -15.95961 -15.81377 -15.65460 -15.46199 -14.91833 -14.89210 -14.86163 -14.49070 -14.30193 -14.07123 -13.98910 -13.00546 -12.93042 -12.73684 -12.53080 -12.03163 -11.92107 -11.68848 -11.57826 -11.29423 -11.15076 -11.07541 -10.81007 -10.57002 -9.83945 -9.64618 -9.46444 -8.80995 -8.79245 -7.63534 -7.51719 -7.03766 -4.60480 0.36274 0.38635 2.35167 2.75731 2.88484 2.90421 2.93781 2.95956 3.01581 3.60905 3.72868 3.74305 3.96278 4.18527 4.35676 4.40403 4.83668 5.28925 5.29477 5.58415 5.68653 5.75537 6.02901 6.04656 6.23221 6.44571 6.54836 6.56175 6.73811 6.88188 6.97762 7.10198 7.41872 7.59517 7.75185 7.80368 8.02527 8.35104 8.59460 8.68974 9.88337 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.020901 B = 0.003529 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.347336 B = 7932.125113 C = 8693.796350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.199 4.199 3 C -0.043 4.043 4 C -0.231 4.231 5 C 0.001 3.999 6 C 0.110 3.890 7 F -0.100 7.100 8 C 0.054 3.946 9 F -0.111 7.111 10 C 0.062 3.938 11 F -0.109 7.109 12 C 0.054 3.946 13 F -0.110 7.110 14 C 0.111 3.889 15 F -0.098 7.098 16 C -0.061 4.061 17 C -0.167 4.167 18 C 0.130 3.870 19 C -0.440 4.440 20 H 0.088 0.912 21 C 0.073 3.927 22 N -0.775 5.775 23 Si 0.911 3.089 24 H -0.268 1.268 25 H -0.258 1.258 26 H -0.273 1.273 27 H 0.047 0.953 28 H 0.039 0.961 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.121 0.879 33 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.712 8.637 -1.691 9.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.200 4.200 3 C -0.062 4.062 4 C -0.233 4.233 5 C -0.002 4.002 6 C 0.089 3.911 7 F -0.078 7.078 8 C 0.032 3.968 9 F -0.089 7.089 10 C 0.041 3.959 11 F -0.087 7.087 12 C 0.032 3.968 13 F -0.089 7.089 14 C 0.090 3.910 15 F -0.076 7.076 16 C -0.080 4.080 17 C -0.186 4.186 18 C 0.127 3.873 19 C -0.468 4.468 20 H 0.106 0.894 21 C -0.147 4.147 22 N -0.398 5.398 23 Si 0.735 3.265 24 H -0.193 1.193 25 H -0.181 1.181 26 H -0.198 1.198 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.139 0.861 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.895 8.524 -1.532 9.132 hybrid contribution 0.083 -0.422 0.025 0.430 sum 2.978 8.103 -1.507 8.763 Atomic orbital electron populations 1.20407 0.93083 1.00375 1.00233 1.19382 0.94635 0.92773 1.13227 1.20042 0.91706 0.96404 0.98026 1.17417 0.92486 0.88130 1.25223 1.18837 0.95732 0.96122 0.89476 1.17180 0.95268 0.92385 0.86258 1.91602 1.72353 1.91790 1.52015 1.17054 1.03006 0.90380 0.86362 1.91569 1.94862 1.69506 1.52973 1.16670 0.99689 0.85202 0.94344 1.91566 1.77646 1.43080 1.96447 1.17074 0.98709 0.94615 0.86375 1.91571 1.72462 1.91902 1.52931 1.17214 0.99696 0.87646 0.86405 1.91624 1.94172 1.69594 1.52169 1.20311 0.97115 0.91851 0.98726 1.20912 0.94449 0.96426 1.06831 1.17603 0.91873 0.91760 0.86089 1.19764 1.02524 0.92575 1.31912 0.89433 1.26048 0.94101 1.01891 0.92696 1.69814 1.17602 1.32581 1.19785 0.86235 0.79627 0.80339 0.80339 1.19273 1.18122 1.19769 0.93434 0.94244 0.92206 0.89077 0.89172 0.86131 0.90276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.60 9.61 36.01 0.35 -1.25 16 2 C -0.20 -4.41 5.90 -104.32 -0.62 -5.02 16 3 C -0.04 -0.90 9.14 -39.65 -0.36 -1.27 16 4 C -0.23 -4.72 4.72 -104.64 -0.49 -5.21 16 5 C 0.00 0.01 5.31 -104.76 -0.56 -0.55 16 6 C 0.11 1.74 7.25 -38.96 -0.28 1.45 16 7 F -0.10 -1.68 16.59 2.25 0.04 -1.64 16 8 C 0.05 0.76 7.30 -39.38 -0.29 0.47 16 9 F -0.11 -1.57 17.08 2.25 0.04 -1.53 16 10 C 0.06 0.86 7.31 -39.20 -0.29 0.58 16 11 F -0.11 -1.48 17.08 2.25 0.04 -1.44 16 12 C 0.05 0.78 7.30 -39.38 -0.29 0.49 16 13 F -0.11 -1.60 17.08 2.25 0.04 -1.56 16 14 C 0.11 1.80 7.24 -38.96 -0.28 1.52 16 15 F -0.10 -1.74 16.58 2.25 0.04 -1.70 16 16 C -0.06 -1.33 9.49 -39.64 -0.38 -1.71 16 17 C -0.17 -3.98 8.61 -39.28 -0.34 -4.32 16 18 C 0.13 3.14 5.55 -106.80 -0.59 2.54 16 19 C -0.44 -10.45 8.42 -37.90 -0.32 -10.77 16 20 H 0.09 1.97 6.26 -52.49 -0.33 1.65 16 21 C 0.07 1.66 5.14 -17.33 -0.09 1.57 16 22 N -0.77 -18.29 11.00 55.55 0.61 -17.68 16 23 Si 0.91 16.93 29.59 -169.99 -5.03 11.90 16 24 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 25 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 26 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.04 0.65 8.08 -51.93 -0.42 0.24 16 29 H 0.06 1.12 6.25 -51.93 -0.32 0.79 16 30 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 32 H 0.12 2.96 6.25 -52.49 -0.33 2.63 16 33 H 0.29 6.12 8.30 -40.82 -0.34 5.78 16 LS Contribution 314.03 15.07 4.73 4.73 Total: -1.00 -23.58 314.03 -6.12 -29.70 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -1.80 Total: 0.69 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: -4.82 Total: -21.47 kcal Atomic # 7 Polarization: -18.29 SS G_CDS: 0.61 Total: -17.68 kcal Atomic # 9 Polarization: -8.07 SS G_CDS: 0.19 Total: -7.88 kcal Atomic # 14 Polarization: 16.93 SS G_CDS: -5.03 Total: 11.90 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -23.58 -6.12 -29.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241408427.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.979 kcal (2) G-P(sol) polarization free energy of solvation -23.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds