Wall clock time and date at job start Tue Mar 31 2020 14:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36220 * 119.94253 * 2 1 4 4 C 1.40948 * 119.88235 * 179.97438 * 3 2 1 5 5 C 1.40987 * 120.10759 * 180.02562 * 4 3 2 6 6 H 1.07998 * 120.00024 * 334.39487 * 5 4 3 7 7 C 1.39965 * 119.99999 * 154.39178 * 5 4 3 8 8 N 1.30830 * 119.99525 * 343.16732 * 7 5 4 9 9 Si 1.86798 * 120.00251 * 163.16494 * 7 5 4 10 10 H 1.48497 * 109.46957 * 90.00005 * 9 7 5 11 11 H 1.48493 * 109.47059 * 210.00298 * 9 7 5 12 12 H 1.48502 * 109.46848 * 329.99821 * 9 7 5 13 13 C 1.40970 * 119.78021 * 0.02562 * 4 3 2 14 14 C 1.36190 * 119.88292 * 359.97438 * 13 4 3 15 15 C 1.40009 * 119.94155 * 180.25470 * 2 1 3 16 16 C 1.47824 * 119.89006 * 0.02562 * 15 2 1 17 17 C 1.39867 * 120.13005 * 89.95895 * 16 15 2 18 18 F 1.35102 * 120.06830 * 359.97438 * 17 16 15 19 19 C 1.38277 * 119.86365 * 179.74479 * 17 16 15 20 20 F 1.35101 * 119.93346 * 180.25552 * 19 17 16 21 21 C 1.38752 * 120.13212 * 0.52787 * 19 17 16 22 22 F 1.35097 * 119.86755 * 179.70017 * 21 19 17 23 23 C 1.38758 * 120.26451 * 359.72887 * 21 19 17 24 24 F 1.35101 * 119.92749 * 179.97438 * 23 21 19 25 25 C 1.38261 * 120.13458 * 0.02562 * 23 21 19 26 26 F 1.35099 * 120.06638 * 180.02562 * 25 23 21 27 27 H 1.08998 * 109.46940 * 89.99777 * 1 2 3 28 28 H 1.08999 * 109.46972 * 210.00010 * 1 2 3 29 29 H 1.09002 * 109.46945 * 329.99848 * 1 2 3 30 30 H 1.07994 * 120.05672 * 359.97438 * 3 2 1 31 31 H 0.97002 * 119.99967 * 179.97438 * 8 7 5 32 32 H 1.07997 * 120.05982 * 180.02562 * 13 4 3 33 33 H 1.08005 * 119.94200 * 179.97438 * 14 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1869 1.1804 0.0000 4 6 3.5964 1.1789 0.0005 5 6 4.3049 2.3978 0.0011 6 1 3.8472 3.2886 -0.4031 7 6 5.6014 2.4534 0.5255 8 7 6.0352 1.4928 1.3005 9 14 6.7123 3.8991 0.1188 10 1 6.5239 4.9684 1.1318 11 1 8.1286 3.4528 0.1276 12 1 6.3675 4.4251 -1.2264 13 6 4.2953 -0.0454 0.0005 14 6 3.6062 -1.2201 0.0005 15 6 2.2058 -1.2132 -0.0054 16 6 1.4630 -2.4912 -0.0116 17 6 1.1098 -3.0921 -1.2243 18 9 1.4466 -2.5054 -2.3938 19 6 0.4196 -4.2903 -1.2237 20 9 0.0823 -4.8745 -2.3943 21 6 0.0677 -4.8908 -0.0234 22 9 -0.6120 -6.0584 -0.0292 23 6 0.4105 -4.2967 1.1827 24 9 0.0640 -4.8872 2.3474 25 6 1.1051 -3.1013 1.1950 26 9 1.4387 -2.5244 2.3702 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6470 2.1156 -0.0004 31 1 6.9339 1.5311 1.6637 32 1 5.3752 -0.0518 0.0014 33 1 4.1407 -2.1586 0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241409104.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:06 Heat of formation + Delta-G solvation = -182.548896 kcal Electronic energy + Delta-G solvation = -27391.623979 eV Core-core repulsion = 22603.544576 eV Total energy + Delta-G solvation = -4788.079403 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.03518 -49.67213 -49.17079 -48.64458 -48.36503 -38.94652 -37.50952 -34.28289 -31.69441 -31.38313 -30.07313 -29.08192 -26.02900 -25.65705 -23.34878 -23.14794 -20.82502 -20.23568 -18.93964 -18.76419 -18.12164 -17.29729 -17.10488 -16.70200 -16.49532 -15.99902 -15.83955 -15.67931 -15.48721 -15.05251 -14.95089 -14.91027 -14.53724 -14.34154 -14.03165 -13.86723 -13.12756 -12.97664 -12.87575 -12.50410 -12.16356 -11.96513 -11.74131 -11.68687 -11.33774 -11.17790 -11.08146 -10.79952 -10.53902 -9.94251 -9.68092 -9.34748 -8.84993 -8.78727 -7.69346 -7.46804 -6.99282 -4.59469 0.33403 0.34399 2.41516 2.67071 2.83603 2.90264 2.95684 2.96866 3.03002 3.55626 3.68998 3.76741 3.90491 4.14912 4.31327 4.40670 4.77858 5.23915 5.33155 5.58265 5.63907 5.70664 5.77954 5.87756 6.13727 6.15926 6.39801 6.41179 6.76099 6.83504 6.99328 7.12147 7.41615 7.62461 7.82837 7.84625 8.05124 8.40495 8.64968 8.74046 9.93624 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.021499 B = 0.003542 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.074369 B = 7903.907152 C = 8359.360840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.020 4.020 3 C -0.226 4.226 4 C 0.127 3.873 5 C -0.448 4.448 6 H 0.083 0.917 7 C 0.075 3.925 8 N -0.778 5.778 9 Si 0.911 3.089 10 H -0.267 1.267 11 H -0.274 1.274 12 H -0.258 1.258 13 C -0.171 4.171 14 C -0.060 4.060 15 C -0.235 4.235 16 C 0.002 3.998 17 C 0.120 3.880 18 F -0.097 7.097 19 C 0.049 3.951 20 F -0.110 7.110 21 C 0.072 3.928 22 F -0.107 7.107 23 C 0.049 3.951 24 F -0.110 7.110 25 C 0.120 3.880 26 F -0.096 7.096 27 H 0.060 0.940 28 H 0.047 0.953 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.285 0.715 32 H 0.121 0.879 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.049 -7.891 -1.744 10.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.020 4.020 3 C -0.245 4.245 4 C 0.124 3.876 5 C -0.476 4.476 6 H 0.101 0.899 7 C -0.145 4.145 8 N -0.402 5.402 9 Si 0.735 3.265 10 H -0.192 1.192 11 H -0.199 1.199 12 H -0.182 1.182 13 C -0.190 4.190 14 C -0.078 4.078 15 C -0.236 4.236 16 C 0.000 4.000 17 C 0.099 3.901 18 F -0.075 7.075 19 C 0.027 3.973 20 F -0.088 7.088 21 C 0.050 3.950 22 F -0.086 7.086 23 C 0.027 3.973 24 F -0.088 7.088 25 C 0.099 3.901 26 F -0.074 7.074 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.096 0.904 32 H 0.139 0.861 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.864 -8.002 -1.588 10.661 hybrid contribution 0.423 0.221 -0.002 0.477 sum -6.440 -7.781 -1.590 10.225 Atomic orbital electron populations 1.20772 0.93728 1.01276 1.01043 1.18960 0.93313 0.92311 0.97396 1.20497 0.94195 0.95271 1.14555 1.17707 0.90904 0.93240 0.85719 1.19678 0.98016 0.96295 1.33602 0.89928 1.26023 0.98416 0.97584 0.92512 1.69816 1.18250 1.31489 1.20621 0.86248 0.78886 0.80965 0.80396 1.19248 1.19864 1.18210 1.20935 0.99798 0.91146 1.07093 1.20280 0.91516 0.97316 0.98709 1.17252 0.92428 0.87365 1.26595 1.18815 0.96620 0.96710 0.87871 1.17303 0.99071 0.90576 0.83183 1.91612 1.89678 1.82716 1.43527 1.17081 1.04953 0.93987 0.81271 1.91577 1.90437 1.83133 1.43666 1.16715 1.01328 0.85995 0.90924 1.91577 1.76765 1.43270 1.96957 1.17094 1.04839 0.93980 0.81388 1.91579 1.90180 1.82836 1.44190 1.17337 0.98927 0.90691 0.83184 1.91628 1.89702 1.83106 1.42953 0.92169 0.93432 0.92030 0.88391 0.90375 0.86117 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 9.60 36.01 0.35 -1.51 16 2 C -0.02 -0.40 5.87 -104.68 -0.61 -1.02 16 3 C -0.23 -5.13 9.36 -39.28 -0.37 -5.50 16 4 C 0.13 3.15 5.57 -106.80 -0.59 2.56 16 5 C -0.45 -11.00 9.03 -37.89 -0.34 -11.34 16 6 H 0.08 1.94 7.90 -52.49 -0.41 1.52 16 7 C 0.07 1.74 5.15 -17.33 -0.09 1.65 16 8 N -0.78 -18.72 10.95 55.55 0.61 -18.12 16 9 Si 0.91 17.30 29.59 -169.99 -5.03 12.27 16 10 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 11 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 12 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 13 C -0.17 -4.12 8.62 -39.28 -0.34 -4.46 16 14 C -0.06 -1.30 9.71 -39.64 -0.38 -1.69 16 15 C -0.24 -4.79 4.61 -104.64 -0.48 -5.27 16 16 C 0.00 0.04 3.86 -104.76 -0.40 -0.37 16 17 C 0.12 1.86 7.29 -38.96 -0.28 1.58 16 18 F -0.10 -1.64 16.73 2.25 0.04 -1.60 16 19 C 0.05 0.68 7.30 -39.38 -0.29 0.39 16 20 F -0.11 -1.52 17.08 2.25 0.04 -1.48 16 21 C 0.07 0.97 7.31 -39.20 -0.29 0.68 16 22 F -0.11 -1.42 17.08 2.25 0.04 -1.38 16 23 C 0.05 0.69 7.30 -39.38 -0.29 0.40 16 24 F -0.11 -1.55 17.08 2.25 0.04 -1.51 16 25 C 0.12 1.90 6.96 -38.96 -0.27 1.63 16 26 F -0.10 -1.69 16.73 2.25 0.04 -1.65 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.74 6.81 -51.93 -0.35 0.38 16 29 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 30 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 31 H 0.29 6.21 8.30 -40.82 -0.34 5.87 16 32 H 0.12 3.01 6.19 -52.49 -0.32 2.68 16 33 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 LS Contribution 315.64 15.07 4.76 4.76 Total: -1.00 -24.19 315.64 -6.08 -30.27 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -1.92 Total: 0.73 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: -4.69 Total: -22.28 kcal Atomic # 7 Polarization: -18.72 SS G_CDS: 0.61 Total: -18.12 kcal Atomic # 9 Polarization: -7.82 SS G_CDS: 0.19 Total: -7.63 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.27 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -24.19 -6.08 -30.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241409104.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.283 kcal (2) G-P(sol) polarization free energy of solvation -24.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds