Wall clock time and date at job start Tue Mar 31 2020 14:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36220 * 119.94253 * 2 1 4 4 C 1.40948 * 119.88235 * 179.97438 * 3 2 1 5 5 C 1.40987 * 120.10759 * 180.02562 * 4 3 2 6 6 H 1.07998 * 120.00024 * 334.39487 * 5 4 3 7 7 C 1.39965 * 119.99999 * 154.39178 * 5 4 3 8 8 N 1.30830 * 119.99525 * 343.16732 * 7 5 4 9 9 Si 1.86798 * 120.00251 * 163.16494 * 7 5 4 10 10 H 1.48497 * 109.46957 * 90.00005 * 9 7 5 11 11 H 1.48493 * 109.47059 * 210.00298 * 9 7 5 12 12 H 1.48502 * 109.46848 * 329.99821 * 9 7 5 13 13 C 1.40970 * 119.78021 * 0.02562 * 4 3 2 14 14 C 1.36190 * 119.88292 * 359.97438 * 13 4 3 15 15 C 1.40009 * 119.94155 * 180.25470 * 2 1 3 16 16 C 1.47824 * 119.89006 * 0.02562 * 15 2 1 17 17 C 1.39867 * 120.13005 * 89.95895 * 16 15 2 18 18 F 1.35102 * 120.06830 * 359.97438 * 17 16 15 19 19 C 1.38277 * 119.86365 * 179.74479 * 17 16 15 20 20 F 1.35101 * 119.93346 * 180.25552 * 19 17 16 21 21 C 1.38752 * 120.13212 * 0.52787 * 19 17 16 22 22 F 1.35097 * 119.86755 * 179.70017 * 21 19 17 23 23 C 1.38758 * 120.26451 * 359.72887 * 21 19 17 24 24 F 1.35101 * 119.92749 * 179.97438 * 23 21 19 25 25 C 1.38261 * 120.13458 * 0.02562 * 23 21 19 26 26 F 1.35099 * 120.06638 * 180.02562 * 25 23 21 27 27 H 1.08998 * 109.46940 * 89.99777 * 1 2 3 28 28 H 1.08999 * 109.46972 * 210.00010 * 1 2 3 29 29 H 1.09002 * 109.46945 * 329.99848 * 1 2 3 30 30 H 1.07994 * 120.05672 * 359.97438 * 3 2 1 31 31 H 0.97002 * 119.99967 * 179.97438 * 8 7 5 32 32 H 1.07997 * 120.05982 * 180.02562 * 13 4 3 33 33 H 1.08005 * 119.94200 * 179.97438 * 14 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1869 1.1804 0.0000 4 6 3.5964 1.1789 0.0005 5 6 4.3049 2.3978 0.0011 6 1 3.8472 3.2886 -0.4031 7 6 5.6014 2.4534 0.5255 8 7 6.0352 1.4928 1.3005 9 14 6.7123 3.8991 0.1188 10 1 6.5239 4.9684 1.1318 11 1 8.1286 3.4528 0.1276 12 1 6.3675 4.4251 -1.2264 13 6 4.2953 -0.0454 0.0005 14 6 3.6062 -1.2201 0.0005 15 6 2.2058 -1.2132 -0.0054 16 6 1.4630 -2.4912 -0.0116 17 6 1.1098 -3.0921 -1.2243 18 9 1.4466 -2.5054 -2.3938 19 6 0.4196 -4.2903 -1.2237 20 9 0.0823 -4.8745 -2.3943 21 6 0.0677 -4.8908 -0.0234 22 9 -0.6120 -6.0584 -0.0292 23 6 0.4105 -4.2967 1.1827 24 9 0.0640 -4.8872 2.3474 25 6 1.1051 -3.1013 1.1950 26 9 1.4387 -2.5244 2.3702 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6470 2.1156 -0.0004 31 1 6.9339 1.5311 1.6637 32 1 5.3752 -0.0518 0.0014 33 1 4.1407 -2.1586 0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241409104.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:05 Heat of formation + Delta-G solvation = -190.408282 kcal Electronic energy + Delta-G solvation = -27391.964788 eV Core-core repulsion = 22603.544576 eV Total energy + Delta-G solvation = -4788.420212 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -51.19107 -50.88804 -50.41855 -49.90428 -49.55542 -40.38955 -39.03176 -35.96553 -33.27402 -32.94619 -31.30033 -30.64311 -27.62378 -27.20975 -24.57558 -24.56550 -22.48600 -21.89335 -20.16002 -19.99287 -19.39427 -18.85692 -18.48070 -17.90926 -17.71128 -17.25963 -17.20847 -17.10410 -16.82489 -16.57881 -16.16881 -16.11702 -15.67517 -15.66740 -15.58000 -15.48149 -14.53667 -14.47281 -14.18587 -13.99031 -13.80006 -13.36209 -13.19555 -13.18139 -12.73683 -12.72334 -12.57497 -12.31408 -12.16053 -11.59481 -11.38330 -11.05652 -10.08043 -10.05914 -9.45115 -9.19240 -8.71550 -6.42000 -0.88184 -0.87846 0.73924 1.14258 1.39108 1.42866 1.46084 1.54095 1.61563 2.18135 2.30363 2.47543 2.62114 2.69595 3.00288 3.02424 3.57885 3.63183 3.95133 4.21875 4.23315 4.31309 4.39733 4.46827 4.59559 4.84015 4.99623 5.04042 5.09143 5.15299 5.23710 5.41007 5.67494 5.89942 6.06740 6.06832 6.29706 6.61968 6.85861 6.95844 8.24268 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.021499 B = 0.003542 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.074369 B = 7903.907152 C = 8359.360840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.026 4.026 3 C -0.243 4.243 4 C 0.098 3.902 5 C -0.486 4.486 6 H 0.081 0.919 7 C 0.037 3.963 8 N -0.813 5.813 9 Si 0.983 3.017 10 H -0.261 1.261 11 H -0.266 1.266 12 H -0.257 1.257 13 C -0.195 4.195 14 C -0.067 4.067 15 C -0.223 4.223 16 C -0.013 4.013 17 C 0.124 3.876 18 F -0.106 7.106 19 C 0.067 3.933 20 F -0.104 7.104 21 C 0.095 3.905 22 F -0.099 7.099 23 C 0.066 3.934 24 F -0.106 7.106 25 C 0.120 3.880 26 F -0.109 7.109 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.292 0.708 32 H 0.104 0.896 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.437 -9.125 -2.051 12.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.026 4.026 3 C -0.263 4.263 4 C 0.095 3.905 5 C -0.514 4.514 6 H 0.100 0.900 7 C -0.180 4.180 8 N -0.438 5.438 9 Si 0.803 3.197 10 H -0.186 1.186 11 H -0.190 1.190 12 H -0.181 1.181 13 C -0.214 4.214 14 C -0.086 4.086 15 C -0.225 4.225 16 C -0.015 4.015 17 C 0.103 3.897 18 F -0.084 7.084 19 C 0.046 3.954 20 F -0.083 7.083 21 C 0.073 3.927 22 F -0.077 7.077 23 C 0.044 3.956 24 F -0.084 7.084 25 C 0.099 3.901 26 F -0.087 7.087 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.121 0.879 31 H 0.102 0.898 32 H 0.122 0.878 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.272 -9.254 -1.895 12.556 hybrid contribution 0.695 0.392 0.086 0.803 sum -7.576 -8.862 -1.809 11.799 Atomic orbital electron populations 1.20798 0.90611 1.02535 1.02480 1.19433 0.95733 0.91692 0.95787 1.20699 0.93739 0.96551 1.15263 1.18050 0.92133 0.93688 0.86629 1.19912 0.99567 0.96441 1.35528 0.90044 1.26817 0.99201 1.00213 0.91727 1.69866 1.18947 1.33370 1.21580 0.85190 0.76973 0.77528 0.80027 1.18591 1.19037 1.18119 1.20888 0.99233 0.92118 1.09168 1.20536 0.92698 0.97208 0.98132 1.17498 0.92105 0.89107 1.23742 1.18483 0.98075 0.96006 0.88940 1.17139 0.99325 0.90986 0.82257 1.91597 1.89866 1.83005 1.43950 1.16824 1.04011 0.93100 0.81503 1.91604 1.90248 1.82895 1.43523 1.16519 1.00203 0.85685 0.90289 1.91615 1.76432 1.42815 1.96870 1.16847 1.03984 0.93105 0.81654 1.91601 1.90013 1.82616 1.44146 1.17217 0.99441 0.91232 0.82240 1.91602 1.89977 1.83475 1.43627 0.90494 0.92057 0.90912 0.87872 0.89753 0.87818 0.87621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.38 9.60 71.24 0.68 -2.69 16 2 C -0.03 -1.07 5.87 -19.90 -0.12 -1.19 16 3 C -0.24 -11.30 9.36 22.46 0.21 -11.09 16 4 C 0.10 5.05 5.57 -21.27 -0.12 4.93 16 5 C -0.49 -24.97 9.03 23.36 0.21 -24.76 16 6 H 0.08 4.00 7.90 -2.91 -0.02 3.98 16 7 C 0.04 1.79 5.15 85.26 0.44 2.23 16 8 N -0.81 -40.67 10.95 21.83 0.24 -40.44 16 9 Si 0.98 36.20 29.59 68.60 2.03 38.23 16 10 H -0.26 -9.28 7.11 99.48 0.71 -8.58 16 11 H -0.27 -9.35 7.11 99.48 0.71 -8.64 16 12 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 13 C -0.19 -9.84 8.62 22.46 0.19 -9.65 16 14 C -0.07 -2.99 9.71 22.23 0.22 -2.78 16 15 C -0.22 -8.99 4.61 -19.87 -0.09 -9.08 16 16 C -0.01 -0.41 3.86 -19.95 -0.08 -0.49 16 17 C 0.12 3.56 7.29 22.67 0.17 3.73 16 18 F -0.11 -3.39 16.73 44.97 0.75 -2.63 16 19 C 0.07 1.65 7.30 22.40 0.16 1.81 16 20 F -0.10 -2.54 17.08 44.97 0.77 -1.77 16 21 C 0.09 2.20 7.31 22.52 0.16 2.36 16 22 F -0.10 -2.22 17.08 44.97 0.77 -1.46 16 23 C 0.07 1.65 7.30 22.40 0.16 1.81 16 24 F -0.11 -2.66 17.08 44.97 0.77 -1.89 16 25 C 0.12 3.54 6.96 22.67 0.16 3.70 16 26 F -0.11 -3.68 16.73 44.97 0.75 -2.93 16 27 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.06 1.75 6.81 -2.39 -0.02 1.73 16 29 H 0.07 2.11 8.08 -2.39 -0.02 2.09 16 30 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 31 H 0.29 13.13 8.30 -92.71 -0.77 12.36 16 32 H 0.10 5.48 6.19 -2.91 -0.02 5.47 16 33 H 0.11 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -53.06 315.64 9.65 -43.41 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 1.21 Total: 10.64 kcal Atomic # 6 Polarization: -43.53 SS G_CDS: 2.36 Total: -41.16 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 0.24 Total: -40.44 kcal Atomic # 9 Polarization: -14.49 SS G_CDS: 3.81 Total: -10.68 kcal Atomic # 14 Polarization: 36.20 SS G_CDS: 2.03 Total: 38.23 kcal Total: -53.06 9.65 -43.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241409104.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.996 kcal (2) G-P(sol) polarization free energy of solvation -53.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds