Wall clock time and date at job start Tue Mar 31 2020 15:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86800 * 120.00190 * 2 1 4 4 H 1.48499 * 109.47182 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46941 * 299.99552 * 3 2 1 6 6 H 1.48495 * 109.47163 * 59.99528 * 3 2 1 7 7 C 1.39929 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00346 * 162.81221 * 7 2 1 9 9 C 1.41322 * 120.00054 * 342.53211 * 7 2 1 10 10 C 1.40804 * 120.21006 * 334.84477 * 9 7 2 11 11 C 1.37595 * 120.00375 * 179.73839 * 10 9 7 12 12 C 1.38537 * 120.44468 * 0.55797 * 11 10 9 13 13 C 1.39488 * 120.42661 * 359.69339 * 12 11 10 14 14 C 1.48506 * 120.01393 * 180.02562 * 13 12 11 15 15 C 1.40823 * 126.22308 * 130.04510 * 14 13 12 16 16 N 1.30673 * 108.11210 * 179.97438 * 15 14 13 17 17 N 1.40020 * 108.51947 * 0.02562 * 16 15 14 18 18 C 1.46497 * 125.90350 * 179.97438 * 17 16 15 19 19 C 1.50708 * 109.46639 * 305.02213 * 18 17 16 20 20 C 1.33387 * 125.20310 * 89.71942 * 19 18 17 21 21 C 1.38426 * 114.91896 * 179.85586 * 20 19 18 22 22 C 1.33380 * 114.92025 * 0.43540 * 21 20 19 23 23 S 1.75880 * 125.20123 * 270.02576 * 19 18 17 24 24 C 1.34866 * 108.19713 * 359.75511 * 17 16 15 25 25 C 1.39048 * 119.98062 * 0.02562 * 13 12 11 26 26 F 1.35102 * 120.22033 * 180.02562 * 25 13 12 27 27 H 0.96994 * 119.99598 * 0.02562 * 1 2 3 28 28 H 1.07994 * 119.99366 * 359.97438 * 10 9 7 29 29 H 1.08004 * 119.77779 * 180.27709 * 11 10 9 30 30 H 1.08006 * 119.78664 * 179.71872 * 12 11 10 31 31 H 1.08005 * 125.94005 * 0.02562 * 15 14 13 32 32 H 1.09002 * 109.47325 * 65.01963 * 18 17 16 33 33 H 1.09000 * 109.47346 * 185.02546 * 18 17 16 34 34 H 1.08001 * 122.54006 * 0.02562 * 20 19 18 35 35 H 1.08002 * 122.53587 * 180.20421 * 21 20 19 36 36 H 1.08000 * 125.20147 * 179.78936 * 22 21 20 37 37 H 1.07997 * 126.19875 * 180.24467 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 3.7026 1.3463 0.0006 5 1 1.8839 2.3963 -1.2125 6 1 1.8838 2.3965 1.2124 7 6 2.0082 -1.2118 0.0005 8 1 3.0520 -1.2329 -0.2758 9 6 1.3504 -2.4073 0.3684 10 6 0.2233 -2.3653 1.2113 11 6 -0.4171 -3.5315 1.5625 12 6 0.0461 -4.7530 1.1014 13 6 1.1642 -4.8162 0.2698 14 6 1.6526 -6.1306 -0.2196 15 6 1.9491 -6.4633 -1.5554 16 7 2.3499 -7.7067 -1.5850 17 7 2.3248 -8.2132 -0.2799 18 6 2.6999 -9.5712 0.1219 19 6 1.8990 -10.5696 -0.6737 20 6 2.2636 -11.0873 -1.8476 21 6 1.3660 -11.9902 -2.3910 22 6 0.2682 -12.1987 -1.6627 23 16 0.3370 -11.2246 -0.1998 24 6 1.9003 -7.2335 0.5440 25 6 1.8215 -3.6483 -0.1009 26 9 2.9045 -3.7039 -0.9065 27 1 -0.4849 0.8400 -0.0004 28 1 -0.1408 -1.4175 1.5790 29 1 -1.2840 -3.4946 2.2056 30 1 -0.4620 -5.6621 1.3874 31 1 1.8613 -5.8049 -2.4071 32 1 3.7625 -9.7253 -0.0660 33 1 2.4956 -9.7053 1.1842 34 1 3.1904 -10.8242 -2.3359 35 1 1.5396 -12.4852 -3.3350 36 1 -0.5393 -12.8642 -1.9301 37 1 1.7769 -7.3091 1.6143 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242092062.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:43 Heat of formation + Delta-G solvation = 84.028012 kcal Electronic energy + Delta-G solvation = -23635.145260 eV Core-core repulsion = 19998.988167 eV Total energy + Delta-G solvation = -3636.157094 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.074 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -47.14489 -40.76191 -38.06657 -37.17871 -34.14615 -33.54370 -30.90378 -30.11118 -29.52902 -27.65804 -26.01941 -25.29428 -23.40827 -21.88412 -21.04149 -20.23283 -19.75071 -19.45411 -17.67090 -17.08945 -16.46664 -15.91669 -15.82893 -15.24482 -14.79092 -14.35780 -14.22387 -14.12750 -13.77742 -13.47593 -13.00404 -12.90291 -12.83695 -12.71500 -12.56691 -12.31222 -11.88362 -11.78424 -11.62878 -11.22857 -11.09638 -10.97587 -10.81162 -10.51764 -10.23486 -9.82706 -9.55393 -9.27302 -9.11074 -8.99526 -8.65974 -8.33663 -7.43141 -7.03648 -6.81144 -4.40838 0.68425 1.39196 1.76501 2.12128 2.42493 2.62465 2.69458 2.94494 3.06348 3.11158 3.14095 3.47614 3.91078 4.36723 4.52546 4.56648 4.83730 5.09304 5.18979 5.28669 5.35685 5.39684 5.49077 5.86241 5.89309 5.94322 6.01824 6.08618 6.25069 6.29808 6.39579 6.59741 6.85209 7.01831 7.10215 7.19432 7.29443 7.54043 7.64165 7.93701 7.99215 8.05232 8.11360 8.53447 8.74155 8.84171 10.11920 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.029725 B = 0.002535 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.737909 B =11042.289767 C =11521.901393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.076 3.924 3 Si 0.910 3.090 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.454 4.454 8 H 0.082 0.918 9 C 0.086 3.914 10 C -0.146 4.146 11 C -0.111 4.111 12 C -0.205 4.205 13 C -0.024 4.024 14 C -0.162 4.162 15 C 0.068 3.932 16 N -0.296 5.296 17 N -0.380 5.380 18 C 0.213 3.787 19 C -0.200 4.200 20 C -0.101 4.101 21 C -0.138 4.138 22 C -0.208 4.208 23 S 0.107 5.893 24 C 0.051 3.949 25 C -0.012 4.012 26 F -0.159 7.159 27 H 0.282 0.718 28 H 0.124 0.876 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.181 0.819 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.164 0.836 37 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.096 -18.471 0.980 18.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.483 4.483 8 H 0.100 0.900 9 C 0.083 3.917 10 C -0.166 4.166 11 C -0.130 4.130 12 C -0.225 4.225 13 C -0.026 4.026 14 C -0.173 4.173 15 C -0.119 4.119 16 N -0.117 5.117 17 N -0.163 5.163 18 C 0.090 3.910 19 C -0.318 4.318 20 C -0.133 4.133 21 C -0.168 4.168 22 C -0.344 4.344 23 S 0.371 5.629 24 C -0.093 4.093 25 C -0.032 4.032 26 F -0.138 7.138 27 H 0.093 0.907 28 H 0.142 0.858 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.198 0.802 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.181 0.819 37 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 0.424 -19.216 1.497 19.279 hybrid contribution 0.929 1.240 -0.941 1.813 sum 1.353 -17.977 0.556 18.036 Atomic orbital electron populations 1.69827 1.07575 1.29353 1.34824 1.25894 0.94750 1.01396 0.92131 0.86217 0.81097 0.80637 0.78603 1.18277 1.19880 1.19617 1.19522 0.98209 0.90892 1.39724 0.89963 1.17558 0.92652 0.90698 0.90780 1.21198 0.98258 0.97286 0.99817 1.20636 0.99039 0.92932 1.00399 1.20205 0.99550 0.96511 1.06253 1.17601 0.96655 0.88252 1.00069 1.18987 1.10916 0.94844 0.92530 1.24010 0.97477 0.92604 0.97765 1.77154 1.24653 1.11660 0.98186 1.48338 1.53246 1.09348 1.05399 1.19866 0.98178 0.75536 0.97445 1.24479 0.99930 1.05536 1.01865 1.20161 1.01595 0.97184 0.94351 1.20191 0.94296 1.00658 1.01701 1.25669 1.03286 1.06235 0.99213 1.84322 1.17217 1.39054 1.22307 1.22457 1.01226 0.88538 0.97072 1.17825 0.90545 0.93752 1.01108 1.91267 1.53362 1.97216 1.71930 0.90740 0.85813 0.88755 0.88711 0.80201 0.88259 0.87889 0.84030 0.84174 0.81864 0.81133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.99 10.98 55.55 0.61 -19.38 16 2 C 0.08 1.90 5.14 -17.34 -0.09 1.81 16 3 Si 0.91 18.57 29.59 -169.99 -5.03 13.54 16 4 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.45 -12.13 8.77 -37.78 -0.33 -12.46 16 8 H 0.08 2.19 7.74 -52.49 -0.41 1.78 16 9 C 0.09 2.29 5.57 -106.79 -0.59 1.69 16 10 C -0.15 -3.66 8.68 -38.85 -0.34 -3.99 16 11 C -0.11 -2.48 10.01 -39.71 -0.40 -2.88 16 12 C -0.21 -4.40 9.70 -39.01 -0.38 -4.78 16 13 C -0.02 -0.53 5.75 -104.90 -0.60 -1.13 16 14 C -0.16 -3.17 5.36 -105.34 -0.56 -3.73 16 15 C 0.07 1.30 11.41 -17.07 -0.19 1.11 16 16 N -0.30 -5.22 12.37 30.80 0.38 -4.84 16 17 N -0.38 -5.70 3.66 -62.27 -0.23 -5.92 16 18 C 0.21 2.27 6.99 -5.19 -0.04 2.24 16 19 C -0.20 -2.20 5.94 -36.00 -0.21 -2.42 16 20 C -0.10 -1.08 10.05 -41.21 -0.41 -1.49 16 21 C -0.14 -1.31 10.18 -41.21 -0.42 -1.73 16 22 C -0.21 -1.92 11.23 29.03 0.33 -1.59 16 23 S 0.11 1.10 23.33 -107.50 -2.51 -1.41 16 24 C 0.05 0.82 11.31 -16.87 -0.19 0.63 16 25 C -0.01 -0.30 7.25 -38.32 -0.28 -0.58 16 26 F -0.16 -4.01 15.81 2.25 0.04 -3.98 16 27 H 0.28 6.42 8.30 -40.82 -0.34 6.09 16 28 H 0.12 3.17 6.19 -52.49 -0.32 2.84 16 29 H 0.09 1.84 8.06 -52.48 -0.42 1.41 16 30 H 0.09 1.80 8.06 -52.48 -0.42 1.37 16 31 H 0.18 3.30 8.06 -52.48 -0.42 2.87 16 32 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.10 0.83 8.07 -51.93 -0.42 0.41 16 34 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 35 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.17 2.25 8.06 -52.49 -0.42 1.82 16 LS Contribution 345.24 15.07 5.20 5.20 Total: -1.00 -29.74 345.24 -9.92 -39.66 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -3.67 Total: 6.41 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: -4.72 Total: -29.29 kcal Atomic # 7 Polarization: -30.90 SS G_CDS: 0.76 Total: -30.14 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.04 Total: -3.98 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -2.51 Total: -1.41 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.74 -9.92 -39.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242092062.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.691 kcal (2) G-P(sol) polarization free energy of solvation -29.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds