Wall clock time and date at job start Tue Mar 31 2020 15:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30866 * 1 3 3 Si 1.86797 * 119.99914 * 2 1 4 4 H 1.48499 * 109.47350 * 269.99648 * 3 2 1 5 5 H 1.48502 * 109.47321 * 30.00209 * 3 2 1 6 6 H 1.48507 * 109.47042 * 149.99931 * 3 2 1 7 7 C 1.39931 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00070 * 197.87745 * 7 2 1 9 9 C 1.40954 * 119.99849 * 17.87838 * 7 2 1 10 10 C 1.40944 * 120.13844 * 24.80505 * 9 7 2 11 11 C 1.36180 * 119.90241 * 180.02562 * 10 9 7 12 12 C 1.40032 * 120.18397 * 0.02562 * 11 10 9 13 13 C 1.48015 * 119.86496 * 180.02562 * 12 11 10 14 14 C 1.41081 * 126.36266 * 0.02562 * 13 12 11 15 15 N 1.30558 * 108.12011 * 179.69655 * 14 13 12 16 16 N 1.39950 * 108.84224 * 0.44517 * 15 14 13 17 17 C 1.46505 * 125.81394 * 179.81223 * 16 15 14 18 18 C 1.50703 * 109.47054 * 304.68631 * 17 16 15 19 19 C 1.33386 * 125.19981 * 90.00230 * 18 17 16 20 20 C 1.38420 * 114.91919 * 179.97438 * 19 18 17 21 21 C 1.33385 * 114.92287 * 0.24707 * 20 19 18 22 22 S 1.75882 * 109.59305 * 359.63701 * 21 20 19 23 23 C 1.34709 * 108.37147 * 359.54640 * 16 15 14 24 24 C 1.39792 * 120.27365 * 0.27383 * 12 11 10 25 25 C 1.36548 * 120.09358 * 359.44412 * 24 12 11 26 26 F 1.35099 * 120.09106 * 180.25220 * 25 24 12 27 27 H 0.96999 * 120.00384 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.04777 * 0.04725 * 10 9 7 29 29 H 1.07999 * 119.91169 * 180.02562 * 11 10 9 30 30 H 1.08005 * 125.94045 * 359.97438 * 14 13 12 31 31 H 1.09005 * 109.47082 * 184.69443 * 17 16 15 32 32 H 1.08991 * 109.47310 * 64.69229 * 17 16 15 33 33 H 1.08001 * 122.54183 * 359.97438 * 19 18 17 34 34 H 1.08002 * 122.53603 * 179.97438 * 20 19 18 35 35 H 1.08002 * 125.20049 * 179.75335 * 21 20 19 36 36 H 1.08000 * 126.30537 * 180.29930 * 23 16 15 37 37 H 1.07997 * 119.95269 * 179.70583 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4902 2.0464 -1.4000 5 1 1.4401 2.6527 0.7001 6 1 3.5402 1.4402 0.7001 7 6 2.0083 -1.2118 0.0005 8 1 3.0492 -1.2343 0.2877 9 6 1.3546 -2.4032 -0.3737 10 6 0.2273 -2.3566 -1.2184 11 6 -0.4009 -3.5105 -1.5765 12 6 0.0697 -4.7432 -1.1074 13 6 -0.6182 -5.9931 -1.5015 14 6 -1.7501 -6.0972 -2.3372 15 7 -2.0550 -7.3614 -2.4521 16 7 -1.1500 -8.1152 -1.6964 17 6 -1.1533 -9.5739 -1.5597 18 6 -2.5029 -10.0292 -1.0675 19 6 -3.5349 -10.3573 -1.8463 20 6 -4.6766 -10.7476 -1.1680 21 6 -4.5735 -10.7316 0.1618 22 16 -2.9580 -10.2100 0.6218 23 6 -0.2716 -7.2716 -1.1206 24 6 1.1834 -4.7977 -0.2642 25 6 1.8254 -3.6481 0.0973 26 9 2.9047 -3.7012 0.9081 27 1 -0.4851 0.8400 -0.0004 28 1 -0.1376 -1.4071 -1.5813 29 1 -1.2645 -3.4750 -2.2240 30 1 -2.2708 -5.2745 -2.8046 31 1 -0.3861 -9.8737 -0.8458 32 1 -0.9468 -10.0300 -2.5279 33 1 -3.4836 -10.3211 -2.9245 34 1 -5.5837 -11.0386 -1.6769 35 1 -5.3609 -10.9999 0.8505 36 1 0.5527 -7.5465 -0.4792 37 1 1.5391 -5.7508 0.0983 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242092233.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:06 Heat of formation + Delta-G solvation = 80.908675 kcal Electronic energy + Delta-G solvation = -23341.452896 eV Core-core repulsion = 19705.160538 eV Total energy + Delta-G solvation = -3636.292358 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.074 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -47.24019 -40.67698 -38.06313 -37.31275 -34.22397 -33.54020 -30.83802 -30.16908 -29.15059 -28.34718 -26.40871 -24.82642 -23.37618 -21.87725 -21.39680 -19.91576 -19.65710 -19.41138 -17.52503 -17.40108 -16.78872 -15.82498 -15.62562 -15.14118 -14.74867 -14.51410 -14.29673 -14.01662 -13.86900 -13.54026 -13.05243 -12.94552 -12.82948 -12.70822 -12.54687 -12.37754 -11.93213 -11.73662 -11.70887 -11.24038 -11.12174 -10.98081 -10.88639 -10.59628 -10.25834 -9.81859 -9.62044 -9.39651 -9.10265 -8.97884 -8.64575 -8.46849 -7.50360 -7.04433 -6.84884 -4.40557 0.70065 1.40959 1.78533 2.03466 2.43144 2.54166 2.84941 2.97178 2.98784 3.02456 3.05800 3.66196 3.83730 4.38838 4.56668 4.58309 4.84903 5.10039 5.21992 5.29063 5.34548 5.39062 5.49883 5.79421 5.88499 5.97584 6.05200 6.10783 6.25434 6.28503 6.30956 6.43421 6.90473 6.98838 7.04856 7.13921 7.34431 7.48217 7.63636 7.91216 7.95506 8.03348 8.15116 8.46139 8.63525 8.78597 10.00243 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.025458 B = 0.002397 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.574119 B =11680.597056 C =11935.571221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.444 4.444 8 H 0.084 0.916 9 C 0.088 3.912 10 C -0.149 4.149 11 C -0.089 4.089 12 C -0.127 4.127 13 C -0.131 4.131 14 C 0.048 3.952 15 N -0.297 5.297 16 N -0.376 5.376 17 C 0.213 3.787 18 C -0.200 4.200 19 C -0.102 4.102 20 C -0.138 4.138 21 C -0.209 4.209 22 S 0.109 5.891 23 C 0.018 3.982 24 C -0.107 4.107 25 C -0.030 4.030 26 F -0.165 7.165 27 H 0.285 0.715 28 H 0.125 0.875 29 H 0.095 0.905 30 H 0.180 0.820 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.164 0.836 36 H 0.168 0.832 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.338 -16.469 -2.202 17.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.145 4.145 3 Si 0.738 3.262 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.473 4.473 8 H 0.102 0.898 9 C 0.085 3.915 10 C -0.168 4.168 11 C -0.108 4.108 12 C -0.129 4.129 13 C -0.142 4.142 14 C -0.139 4.139 15 N -0.118 5.118 16 N -0.160 5.160 17 C 0.090 3.910 18 C -0.318 4.318 19 C -0.134 4.134 20 C -0.169 4.169 21 C -0.345 4.345 22 S 0.373 5.627 23 C -0.125 4.125 24 C -0.127 4.127 25 C -0.050 4.050 26 F -0.144 7.144 27 H 0.096 0.904 28 H 0.143 0.857 29 H 0.114 0.886 30 H 0.197 0.803 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.159 0.841 34 H 0.158 0.842 35 H 0.181 0.819 36 H 0.185 0.815 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.547 -17.085 -1.255 18.339 hybrid contribution 0.191 1.131 -0.643 1.315 sum -6.356 -15.954 -1.898 17.278 Atomic orbital electron populations 1.69829 1.07670 1.29799 1.33154 1.25970 0.94802 1.01636 0.92089 0.86205 0.80562 0.79923 0.79544 1.19002 1.20093 1.18377 1.19560 0.98534 0.91103 1.38076 0.89764 1.17680 0.92504 0.90860 0.90495 1.20825 0.98453 0.97375 1.00167 1.20435 0.98712 0.91991 0.99696 1.17152 0.99112 0.90020 1.06634 1.19270 0.98759 0.92284 1.03869 1.23916 0.96805 0.93993 0.99170 1.76985 1.14216 1.04015 1.16593 1.48139 1.23739 1.05245 1.38827 1.19847 0.92513 0.76331 1.02328 1.24497 1.00815 1.10238 0.96224 1.20141 0.91820 1.00129 1.01325 1.20183 0.99763 1.03589 0.93362 1.25676 1.00542 1.08778 0.99471 1.84376 1.07082 1.64980 1.06276 1.22674 0.97514 0.90014 1.02321 1.20149 0.96829 0.95637 1.00049 1.17401 0.91280 0.94810 1.01476 1.91272 1.53883 1.97318 1.71963 0.90414 0.85682 0.88643 0.80346 0.87981 0.88372 0.84081 0.84211 0.81878 0.81486 0.88404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.30 10.97 55.55 0.61 -18.69 16 2 C 0.07 1.81 5.13 -17.33 -0.09 1.73 16 3 Si 0.91 18.12 29.60 -169.99 -5.03 13.09 16 4 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.44 -11.65 8.76 -37.92 -0.33 -11.98 16 8 H 0.08 2.19 7.73 -52.49 -0.41 1.78 16 9 C 0.09 2.31 5.58 -106.73 -0.60 1.72 16 10 C -0.15 -3.68 8.62 -39.30 -0.34 -4.02 16 11 C -0.09 -1.98 9.51 -39.65 -0.38 -2.36 16 12 C -0.13 -2.72 5.90 -104.64 -0.62 -3.34 16 13 C -0.13 -2.45 6.08 -104.96 -0.64 -3.08 16 14 C 0.05 0.82 11.42 -17.02 -0.19 0.63 16 15 N -0.30 -4.97 12.34 30.84 0.38 -4.59 16 16 N -0.38 -5.53 3.65 -61.93 -0.23 -5.76 16 17 C 0.21 2.27 6.99 -5.19 -0.04 2.24 16 18 C -0.20 -2.21 5.94 -36.00 -0.21 -2.43 16 19 C -0.10 -1.08 10.05 -41.21 -0.41 -1.49 16 20 C -0.14 -1.31 10.18 -41.21 -0.42 -1.73 16 21 C -0.21 -1.96 11.23 29.04 0.33 -1.63 16 22 S 0.11 1.15 23.33 -107.50 -2.51 -1.35 16 23 C 0.02 0.29 10.88 -16.44 -0.18 0.11 16 24 C -0.11 -2.39 9.47 -39.61 -0.38 -2.77 16 25 C -0.03 -0.74 7.26 -39.08 -0.28 -1.02 16 26 F -0.17 -4.13 16.70 2.25 0.04 -4.09 16 27 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 28 H 0.13 3.14 6.17 -52.49 -0.32 2.82 16 29 H 0.10 1.86 7.03 -52.49 -0.37 1.49 16 30 H 0.18 2.73 7.33 -52.48 -0.38 2.35 16 31 H 0.10 0.85 8.06 -51.93 -0.42 0.43 16 32 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.17 2.27 7.30 -52.49 -0.38 1.89 16 37 H 0.10 1.92 7.01 -52.49 -0.37 1.55 16 LS Contribution 342.11 15.07 5.16 5.16 Total: -1.00 -29.24 342.11 -9.84 -39.07 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -3.48 Total: 6.60 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: -4.78 Total: -29.43 kcal Atomic # 7 Polarization: -29.80 SS G_CDS: 0.76 Total: -29.03 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.04 Total: -4.09 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.51 Total: -1.35 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.24 -9.84 -39.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242092233.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.980 kcal (2) G-P(sol) polarization free energy of solvation -29.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds