Wall clock time and date at job start Tue Mar 31 2020 15:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30866 * 1 3 3 Si 1.86797 * 119.99914 * 2 1 4 4 H 1.48499 * 109.47350 * 269.99648 * 3 2 1 5 5 H 1.48502 * 109.47321 * 30.00209 * 3 2 1 6 6 H 1.48507 * 109.47042 * 149.99931 * 3 2 1 7 7 C 1.39931 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00070 * 197.87745 * 7 2 1 9 9 C 1.40954 * 119.99849 * 17.87838 * 7 2 1 10 10 C 1.40944 * 120.13844 * 24.80505 * 9 7 2 11 11 C 1.36180 * 119.90241 * 180.02562 * 10 9 7 12 12 C 1.40032 * 120.18397 * 0.02562 * 11 10 9 13 13 C 1.48015 * 119.86496 * 180.02562 * 12 11 10 14 14 C 1.41081 * 126.36266 * 0.02562 * 13 12 11 15 15 N 1.30558 * 108.12011 * 179.69655 * 14 13 12 16 16 N 1.39950 * 108.84224 * 0.44517 * 15 14 13 17 17 C 1.46505 * 125.81394 * 179.81223 * 16 15 14 18 18 C 1.50703 * 109.47054 * 304.68631 * 17 16 15 19 19 C 1.33386 * 125.19981 * 90.00230 * 18 17 16 20 20 C 1.38420 * 114.91919 * 179.97438 * 19 18 17 21 21 C 1.33385 * 114.92287 * 0.24707 * 20 19 18 22 22 S 1.75882 * 109.59305 * 359.63701 * 21 20 19 23 23 C 1.34709 * 108.37147 * 359.54640 * 16 15 14 24 24 C 1.39792 * 120.27365 * 0.27383 * 12 11 10 25 25 C 1.36548 * 120.09358 * 359.44412 * 24 12 11 26 26 F 1.35099 * 120.09106 * 180.25220 * 25 24 12 27 27 H 0.96999 * 120.00384 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.04777 * 0.04725 * 10 9 7 29 29 H 1.07999 * 119.91169 * 180.02562 * 11 10 9 30 30 H 1.08005 * 125.94045 * 359.97438 * 14 13 12 31 31 H 1.09005 * 109.47082 * 184.69443 * 17 16 15 32 32 H 1.08991 * 109.47310 * 64.69229 * 17 16 15 33 33 H 1.08001 * 122.54183 * 359.97438 * 19 18 17 34 34 H 1.08002 * 122.53603 * 179.97438 * 20 19 18 35 35 H 1.08002 * 125.20049 * 179.75335 * 21 20 19 36 36 H 1.08000 * 126.30537 * 180.29930 * 23 16 15 37 37 H 1.07997 * 119.95269 * 179.70583 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4902 2.0464 -1.4000 5 1 1.4401 2.6527 0.7001 6 1 3.5402 1.4402 0.7001 7 6 2.0083 -1.2118 0.0005 8 1 3.0492 -1.2343 0.2877 9 6 1.3546 -2.4032 -0.3737 10 6 0.2273 -2.3566 -1.2184 11 6 -0.4009 -3.5105 -1.5765 12 6 0.0697 -4.7432 -1.1074 13 6 -0.6182 -5.9931 -1.5015 14 6 -1.7501 -6.0972 -2.3372 15 7 -2.0550 -7.3614 -2.4521 16 7 -1.1500 -8.1152 -1.6964 17 6 -1.1533 -9.5739 -1.5597 18 6 -2.5029 -10.0292 -1.0675 19 6 -3.5349 -10.3573 -1.8463 20 6 -4.6766 -10.7476 -1.1680 21 6 -4.5735 -10.7316 0.1618 22 16 -2.9580 -10.2100 0.6218 23 6 -0.2716 -7.2716 -1.1206 24 6 1.1834 -4.7977 -0.2642 25 6 1.8254 -3.6481 0.0973 26 9 2.9047 -3.7012 0.9081 27 1 -0.4851 0.8400 -0.0004 28 1 -0.1376 -1.4071 -1.5813 29 1 -1.2645 -3.4750 -2.2240 30 1 -2.2708 -5.2745 -2.8046 31 1 -0.3861 -9.8737 -0.8458 32 1 -0.9468 -10.0300 -2.5279 33 1 -3.4836 -10.3211 -2.9245 34 1 -5.5837 -11.0386 -1.6769 35 1 -5.3609 -10.9999 0.8505 36 1 0.5527 -7.5465 -0.4792 37 1 1.5391 -5.7508 0.0983 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242092233.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:05 Heat of formation + Delta-G solvation = 67.699895 kcal Electronic energy + Delta-G solvation = -23342.025672 eV Core-core repulsion = 19705.160538 eV Total energy + Delta-G solvation = -3636.865134 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.074 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.17452 -41.95768 -39.18150 -38.74555 -35.86509 -34.72072 -32.47572 -31.36885 -30.81656 -29.84338 -27.50947 -26.36737 -24.27885 -23.47162 -23.00330 -21.27448 -21.12680 -20.21548 -19.33935 -18.56050 -17.87339 -17.31808 -16.83064 -16.62172 -16.35371 -16.00748 -15.89810 -15.68317 -15.08521 -14.80524 -14.44914 -14.15388 -13.94019 -13.89362 -13.69087 -13.53931 -13.47934 -13.29611 -12.97315 -12.76074 -12.67144 -12.55275 -12.22307 -11.74773 -11.72452 -11.54599 -11.32791 -11.14935 -10.32369 -10.10680 -9.75602 -9.43063 -9.33271 -8.77957 -8.54394 -6.30140 -0.08638 0.51682 0.65538 0.97491 1.02820 1.11960 1.38098 1.45064 1.51647 1.55826 2.01597 2.09876 2.19885 2.80129 3.50202 3.64306 3.76138 3.95723 4.07455 4.13541 4.21053 4.35952 4.36774 4.59686 4.61082 4.66795 4.73697 4.76669 4.88396 5.09569 5.15884 5.19153 5.31273 5.35672 5.52002 5.60409 5.64763 5.89733 6.05996 6.09512 6.18439 6.22960 6.58388 6.77318 6.82622 6.92354 8.24755 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.025458 B = 0.002397 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.574119 B =11680.597056 C =11935.571221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.039 3.961 3 Si 0.984 3.016 4 H -0.257 1.257 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.489 4.489 8 H 0.070 0.930 9 C 0.054 3.946 10 C -0.162 4.162 11 C -0.096 4.096 12 C -0.103 4.103 13 C -0.175 4.175 14 C 0.044 3.956 15 N -0.308 5.308 16 N -0.365 5.365 17 C 0.203 3.797 18 C -0.216 4.216 19 C -0.106 4.106 20 C -0.148 4.148 21 C -0.205 4.205 22 S 0.087 5.913 23 C 0.044 3.956 24 C -0.112 4.112 25 C -0.057 4.057 26 F -0.172 7.172 27 H 0.294 0.706 28 H 0.114 0.886 29 H 0.121 0.879 30 H 0.191 0.809 31 H 0.129 0.871 32 H 0.119 0.881 33 H 0.148 0.852 34 H 0.162 0.838 35 H 0.186 0.814 36 H 0.195 0.805 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.330 -18.463 -2.686 20.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.178 4.178 3 Si 0.804 3.196 4 H -0.181 1.181 5 H -0.187 1.187 6 H -0.187 1.187 7 C -0.517 4.517 8 H 0.088 0.912 9 C 0.051 3.949 10 C -0.181 4.181 11 C -0.114 4.114 12 C -0.106 4.106 13 C -0.186 4.186 14 C -0.142 4.142 15 N -0.130 5.130 16 N -0.147 5.147 17 C 0.081 3.919 18 C -0.333 4.333 19 C -0.138 4.138 20 C -0.178 4.178 21 C -0.341 4.341 22 S 0.350 5.650 23 C -0.102 4.102 24 C -0.131 4.131 25 C -0.077 4.077 26 F -0.151 7.151 27 H 0.105 0.895 28 H 0.132 0.868 29 H 0.139 0.861 30 H 0.208 0.792 31 H 0.147 0.853 32 H 0.136 0.864 33 H 0.165 0.835 34 H 0.179 0.821 35 H 0.203 0.797 36 H 0.212 0.788 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.566 -19.126 -1.752 20.642 hybrid contribution 0.339 1.366 -0.539 1.507 sum -7.227 -17.760 -2.292 19.311 Atomic orbital electron populations 1.69849 1.08813 1.31114 1.33842 1.26735 0.95581 1.04394 0.91100 0.85168 0.78922 0.75625 0.79840 1.18137 1.18709 1.18749 1.19660 0.98319 0.92669 1.41079 0.91161 1.18012 0.93640 0.91626 0.91599 1.20814 0.98732 0.97918 1.00652 1.20729 0.99245 0.91617 0.99824 1.17447 0.97859 0.91096 1.04189 1.19171 1.00514 0.92088 1.06872 1.24126 0.96473 0.94704 0.98898 1.76979 1.14926 1.03835 1.17225 1.48533 1.22395 1.06702 1.37066 1.20306 0.93377 0.73833 1.04356 1.24541 1.01149 1.11341 0.96303 1.20396 0.92072 0.99534 1.01812 1.20466 1.00336 1.03439 0.93541 1.26006 1.00239 1.07914 0.99945 1.84440 1.08454 1.65512 1.06568 1.23087 0.97224 0.89393 1.00506 1.20427 0.96759 0.95929 0.99996 1.17733 0.91911 0.95676 1.02406 1.91236 1.54259 1.97374 1.72237 0.89548 0.86812 0.86095 0.79222 0.85344 0.86355 0.83467 0.82104 0.79700 0.78816 0.85533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.35 10.97 21.83 0.24 -41.11 16 2 C 0.04 1.93 5.13 85.25 0.44 2.37 16 3 Si 0.98 38.00 29.60 68.60 2.03 40.03 16 4 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 5 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 6 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 7 C -0.49 -26.95 8.76 23.35 0.20 -26.74 16 8 H 0.07 3.89 7.73 -2.91 -0.02 3.87 16 9 C 0.05 2.98 5.58 -21.23 -0.12 2.86 16 10 C -0.16 -8.26 8.62 22.45 0.19 -8.07 16 11 C -0.10 -4.24 9.51 22.23 0.21 -4.03 16 12 C -0.10 -4.34 5.90 -19.87 -0.12 -4.46 16 13 C -0.18 -6.16 6.08 -20.08 -0.12 -6.28 16 14 C 0.04 1.42 11.42 85.58 0.98 2.40 16 15 N -0.31 -9.51 12.34 -56.36 -0.70 -10.21 16 16 N -0.36 -9.55 3.65 -349.84 -1.28 -10.83 16 17 C 0.20 3.62 6.99 85.63 0.60 4.22 16 18 C -0.22 -4.19 5.94 24.59 0.15 -4.04 16 19 C -0.11 -1.96 10.05 21.21 0.21 -1.75 16 20 C -0.15 -2.40 10.18 21.21 0.22 -2.19 16 21 C -0.21 -3.32 11.23 66.72 0.75 -2.57 16 22 S 0.09 1.64 23.33 -56.49 -1.32 0.33 16 23 C 0.04 1.26 10.88 84.16 0.92 2.18 16 24 C -0.11 -4.93 9.47 22.25 0.21 -4.72 16 25 C -0.06 -2.95 7.26 22.60 0.16 -2.79 16 26 F -0.17 -8.87 16.70 44.97 0.75 -8.12 16 27 H 0.29 13.35 8.30 -92.71 -0.77 12.58 16 28 H 0.11 5.97 6.17 -2.91 -0.02 5.95 16 29 H 0.12 4.62 7.03 -2.91 -0.02 4.60 16 30 H 0.19 5.48 7.33 -2.91 -0.02 5.46 16 31 H 0.13 1.62 8.06 -2.38 -0.02 1.60 16 32 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.15 2.47 8.06 -2.91 -0.02 2.44 16 34 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 35 H 0.19 2.04 8.06 -2.91 -0.02 2.02 16 36 H 0.20 4.44 7.30 -2.91 -0.02 4.42 16 37 H 0.13 4.70 7.01 -2.91 -0.02 4.68 16 Total: -1.00 -65.17 342.11 5.73 -59.44 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: 1.12 Total: 24.08 kcal Atomic # 6 Polarization: -58.50 SS G_CDS: 4.88 Total: -53.62 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: -1.73 Total: -62.15 kcal Atomic # 9 Polarization: -8.87 SS G_CDS: 0.75 Total: -8.12 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.03 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -1.32 Total: 0.33 kcal Total: -65.17 5.73 -59.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242092233.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.142 kcal (2) G-P(sol) polarization free energy of solvation -65.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds