Wall clock time and date at job start Tue Mar 31 2020 15:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30854 * 1 3 3 Si 1.86797 * 120.00603 * 2 1 4 4 H 1.48496 * 109.47186 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47062 * 300.00248 * 3 2 1 6 6 H 1.48505 * 109.46879 * 59.99684 * 3 2 1 7 7 C 1.39933 * 119.99483 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99934 * 198.00129 * 7 2 1 9 9 C 1.41017 * 120.00084 * 17.99552 * 7 2 1 10 10 C 1.40977 * 120.10374 * 204.68887 * 9 7 2 11 11 C 1.36233 * 119.92321 * 179.76372 * 10 9 7 12 12 C 1.39934 * 120.13745 * 0.53141 * 11 10 9 13 13 C 1.47992 * 119.89322 * 179.71262 * 12 11 10 14 14 C 1.41097 * 126.36150 * 129.70203 * 13 12 11 15 15 N 1.30558 * 108.11988 * 180.02562 * 14 13 12 16 16 N 1.39952 * 108.85272 * 0.02562 * 15 14 13 17 17 C 1.46502 * 125.81728 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47065 * 305.02714 * 17 16 15 19 19 C 1.33386 * 125.20624 * 89.99603 * 18 17 16 20 20 C 1.38428 * 114.92070 * 179.97438 * 19 18 17 21 21 C 1.33388 * 114.92348 * 0.24599 * 20 19 18 22 22 S 1.75890 * 125.19959 * 269.95729 * 18 17 16 23 23 C 1.34722 * 108.37187 * 0.25865 * 16 15 14 24 24 C 1.40152 * 120.21171 * 359.45086 * 12 11 10 25 25 F 1.35100 * 119.96435 * 180.27299 * 24 12 11 26 26 C 1.36444 * 120.07602 * 0.28557 * 24 12 11 27 27 H 0.97000 * 119.99305 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.04074 * 0.02909 * 10 9 7 29 29 H 1.07997 * 119.92888 * 180.25411 * 11 10 9 30 30 H 1.07995 * 125.93875 * 0.02562 * 14 13 12 31 31 H 1.08991 * 109.47465 * 185.02012 * 17 16 15 32 32 H 1.09006 * 109.46930 * 65.02262 * 17 16 15 33 33 H 1.08001 * 122.54177 * 359.97438 * 19 18 17 34 34 H 1.08003 * 122.53535 * 179.97438 * 20 19 18 35 35 H 1.07993 * 125.20348 * 179.75494 * 21 20 19 36 36 H 1.07994 * 126.30724 * 179.73314 * 23 16 15 37 37 H 1.08001 * 120.06876 * 179.97438 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 3.7026 1.3461 0.0006 5 1 1.8840 2.3964 -1.2125 6 1 1.8839 2.3964 1.2125 7 6 2.0081 -1.2119 -0.0005 8 1 3.0484 -1.2350 0.2885 9 6 1.3547 -2.4031 -0.3784 10 6 1.8269 -3.6470 0.0876 11 6 1.1899 -4.7951 -0.2758 12 6 0.0747 -4.7430 -1.1195 13 6 -0.6093 -5.9941 -1.5160 14 6 -1.9943 -6.2516 -1.4364 15 7 -2.2082 -7.4617 -1.8774 16 7 -0.9854 -8.0284 -2.2545 17 6 -0.7964 -9.3751 -2.7996 18 6 -1.3951 -10.3871 -1.8572 19 6 -2.6541 -10.8259 -1.8986 20 6 -2.9789 -11.7586 -0.9287 21 6 -1.9852 -12.0735 -0.0965 22 16 -0.5404 -11.1712 -0.5349 23 6 -0.0109 -7.1270 -2.0249 24 6 -0.3998 -3.5095 -1.5858 25 9 -1.4802 -3.4646 -2.3957 26 6 0.2282 -2.3538 -1.2230 27 1 -0.4849 0.8401 -0.0004 28 1 2.6900 -3.6895 0.7353 29 1 1.5491 -5.7478 0.0844 30 1 -2.7465 -5.5668 -1.0739 31 1 0.2689 -9.5734 -2.9169 32 1 -1.2881 -9.4466 -3.7698 33 1 -3.3661 -10.4796 -2.6331 34 1 -3.9637 -12.1949 -0.8490 35 1 -2.0562 -12.7766 0.7202 36 1 1.0443 -7.2653 -2.2086 37 1 -0.1373 -1.4033 -1.5827 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242092251.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:07 Heat of formation + Delta-G solvation = 69.123815 kcal Electronic energy + Delta-G solvation = -23502.244271 eV Core-core repulsion = 19865.440883 eV Total energy + Delta-G solvation = -3636.803388 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.074 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.45397 -41.91972 -39.17816 -38.76491 -35.76657 -34.74926 -32.47997 -31.19170 -30.90165 -29.80431 -27.53189 -26.42403 -24.23405 -23.35382 -22.84179 -21.57678 -21.14218 -20.22533 -19.46478 -18.41175 -17.80196 -17.58576 -16.69901 -16.56561 -16.37784 -16.14678 -16.01167 -15.66373 -15.14479 -14.78258 -14.38907 -14.24868 -13.90796 -13.81775 -13.72261 -13.60868 -13.47772 -13.29527 -12.99387 -12.75329 -12.60468 -12.51555 -12.05170 -11.84961 -11.73295 -11.64782 -11.36538 -11.06217 -10.32647 -9.82346 -9.73157 -9.41511 -9.31779 -8.81326 -8.64274 -6.36447 -0.08797 0.61962 0.68450 1.01692 1.04246 1.05873 1.40253 1.46754 1.55226 1.56458 1.97349 2.01426 2.19790 2.69001 3.49828 3.63260 3.76299 3.89698 4.09157 4.13643 4.21296 4.36233 4.43797 4.60032 4.60569 4.66797 4.77524 4.89616 4.99225 5.09063 5.15952 5.23014 5.30086 5.32156 5.51384 5.59615 5.73093 5.86900 6.02218 6.04180 6.18358 6.31102 6.61404 6.79888 6.85988 6.93671 8.26223 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.030163 B = 0.002431 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.058903 B =11514.897270 C =11979.373438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.032 3.968 3 Si 0.985 3.015 4 H -0.251 1.251 5 H -0.267 1.267 6 H -0.265 1.265 7 C -0.482 4.482 8 H 0.089 0.911 9 C 0.103 3.897 10 C -0.238 4.238 11 C -0.046 4.046 12 C -0.173 4.173 13 C -0.180 4.180 14 C 0.042 3.958 15 N -0.310 5.310 16 N -0.364 5.364 17 C 0.203 3.797 18 C -0.216 4.216 19 C -0.109 4.109 20 C -0.149 4.149 21 C -0.205 4.205 22 S 0.097 5.903 23 C 0.059 3.941 24 C 0.110 3.890 25 F -0.166 7.166 26 C -0.232 4.232 27 H 0.290 0.710 28 H 0.114 0.886 29 H 0.131 0.869 30 H 0.171 0.829 31 H 0.134 0.866 32 H 0.115 0.885 33 H 0.144 0.856 34 H 0.160 0.840 35 H 0.187 0.813 36 H 0.204 0.796 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.316 -19.788 -2.950 20.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.184 4.184 3 Si 0.806 3.194 4 H -0.174 1.174 5 H -0.192 1.192 6 H -0.190 1.190 7 C -0.511 4.511 8 H 0.107 0.893 9 C 0.100 3.900 10 C -0.258 4.258 11 C -0.065 4.065 12 C -0.176 4.176 13 C -0.191 4.191 14 C -0.143 4.143 15 N -0.132 5.132 16 N -0.146 5.146 17 C 0.081 3.919 18 C -0.334 4.334 19 C -0.141 4.141 20 C -0.179 4.179 21 C -0.341 4.341 22 S 0.361 5.639 23 C -0.088 4.088 24 C 0.090 3.910 25 F -0.145 7.145 26 C -0.252 4.252 27 H 0.101 0.899 28 H 0.132 0.868 29 H 0.148 0.852 30 H 0.188 0.812 31 H 0.152 0.848 32 H 0.133 0.867 33 H 0.161 0.839 34 H 0.177 0.823 35 H 0.204 0.796 36 H 0.221 0.779 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.052 -20.623 -2.690 20.798 hybrid contribution -1.196 1.731 -0.335 2.130 sum -1.144 -18.892 -3.025 19.167 Atomic orbital electron populations 1.69912 1.09360 1.30916 1.34058 1.26915 0.95432 1.05055 0.91032 0.85104 0.79701 0.75788 0.78845 1.17442 1.19226 1.19024 1.19910 0.98864 0.92079 1.40198 0.89253 1.17741 0.90316 0.93818 0.88124 1.20955 1.04945 0.92428 1.07439 1.20482 0.93335 0.97785 0.94850 1.17568 1.02128 0.88677 1.09258 1.19053 0.92694 0.95305 1.12086 1.23996 0.96574 0.93913 0.99841 1.76971 1.04953 1.10014 1.21263 1.48584 1.03938 1.12567 1.49539 1.20331 1.03647 0.73382 0.94509 1.24543 0.99205 1.05828 1.03845 1.20389 0.95390 0.97600 1.00702 1.20448 1.01498 0.99984 0.95999 1.26016 0.95914 1.06371 1.05802 1.84324 1.14735 1.37874 1.26985 1.23222 0.96207 0.89195 1.00148 1.17623 0.85391 0.94926 0.93039 1.91309 1.53929 1.97555 1.71741 1.20852 1.02809 0.95791 1.05771 0.89896 0.86807 0.85164 0.81218 0.84842 0.86666 0.83850 0.82270 0.79596 0.77915 0.87698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.67 10.96 21.83 0.24 -42.44 16 2 C 0.03 1.57 5.13 85.25 0.44 2.01 16 3 Si 0.99 36.97 29.60 68.60 2.03 39.00 16 4 H -0.25 -9.03 7.11 99.48 0.71 -8.32 16 5 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 6 H -0.27 -9.55 7.11 99.48 0.71 -8.85 16 7 C -0.48 -24.92 9.03 23.36 0.21 -24.71 16 8 H 0.09 4.34 7.91 -2.91 -0.02 4.31 16 9 C 0.10 5.41 5.57 -21.28 -0.12 5.29 16 10 C -0.24 -10.98 9.73 22.47 0.22 -10.76 16 11 C -0.05 -1.92 9.63 22.21 0.21 -1.71 16 12 C -0.17 -7.63 5.79 -19.82 -0.11 -7.75 16 13 C -0.18 -6.85 5.39 -20.08 -0.11 -6.95 16 14 C 0.04 1.59 11.43 85.58 0.98 2.57 16 15 N -0.31 -10.61 12.33 -56.35 -0.69 -11.31 16 16 N -0.36 -10.08 3.65 -349.82 -1.28 -11.35 16 17 C 0.20 3.76 6.99 85.63 0.60 4.35 16 18 C -0.22 -4.30 5.94 24.59 0.15 -4.15 16 19 C -0.11 -2.12 10.05 21.22 0.21 -1.90 16 20 C -0.15 -2.52 10.18 21.22 0.22 -2.30 16 21 C -0.21 -3.31 11.23 66.72 0.75 -2.56 16 22 S 0.10 1.79 23.33 -56.49 -1.32 0.47 16 23 C 0.06 1.74 11.38 84.16 0.96 2.70 16 24 C 0.11 5.48 7.20 22.32 0.16 5.64 16 25 F -0.17 -8.20 16.35 44.97 0.74 -7.47 16 26 C -0.23 -12.54 8.60 22.50 0.19 -12.34 16 27 H 0.29 13.68 8.30 -92.71 -0.77 12.91 16 28 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 29 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 30 H 0.17 6.40 8.06 -2.91 -0.02 6.37 16 31 H 0.13 1.65 8.06 -2.39 -0.02 1.63 16 32 H 0.12 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 34 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 35 H 0.19 2.01 8.06 -2.91 -0.02 1.99 16 36 H 0.20 4.51 8.06 -2.91 -0.02 4.49 16 37 H 0.11 6.03 6.16 -2.91 -0.02 6.02 16 Total: -1.00 -64.48 345.77 5.77 -58.71 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: 1.11 Total: 26.97 kcal Atomic # 6 Polarization: -57.54 SS G_CDS: 4.95 Total: -52.58 kcal Atomic # 7 Polarization: -63.36 SS G_CDS: -1.73 Total: -65.10 kcal Atomic # 9 Polarization: -8.20 SS G_CDS: 0.74 Total: -7.47 kcal Atomic # 14 Polarization: 36.97 SS G_CDS: 2.03 Total: 39.00 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -1.32 Total: 0.47 kcal Total: -64.48 5.77 -58.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242092251.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.830 kcal (2) G-P(sol) polarization free energy of solvation -64.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds