Wall clock time and date at job start Tue Mar 31 2020 15:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30865 * 1 3 3 Si 1.86799 * 119.99430 * 2 1 4 4 H 1.48498 * 109.47069 * 239.99965 * 3 2 1 5 5 H 1.48495 * 109.47541 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46962 * 120.00199 * 3 2 1 7 7 C 1.39889 * 120.00368 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00305 * 197.78286 * 7 2 1 9 9 C 1.41338 * 119.99856 * 17.78520 * 7 2 1 10 10 C 1.40842 * 120.15670 * 204.43811 * 9 7 2 11 11 C 1.37570 * 120.00856 * 180.02562 * 10 9 7 12 12 C 1.38754 * 120.34394 * 359.97438 * 11 10 9 13 13 F 1.35093 * 119.84009 * 179.97438 * 12 11 10 14 14 C 1.39962 * 120.31859 * 0.02562 * 12 11 10 15 15 C 1.48485 * 120.00851 * 179.97438 * 14 12 11 16 16 C 1.40837 * 126.21756 * 130.04188 * 15 14 12 17 17 N 1.30678 * 108.10402 * 179.68318 * 16 15 14 18 18 N 1.40016 * 108.51882 * 0.44063 * 17 16 15 19 19 C 1.46507 * 125.89267 * 179.81207 * 18 17 16 20 20 C 1.50693 * 109.47085 * 304.68940 * 19 18 17 21 21 C 1.33393 * 125.20063 * 89.72681 * 20 19 18 22 22 C 1.38430 * 114.92016 * 179.85644 * 21 20 19 23 23 C 1.33384 * 114.92026 * 0.42594 * 22 21 20 24 24 S 1.75882 * 109.59400 * 359.77244 * 23 22 21 25 25 C 1.34849 * 108.20897 * 359.55313 * 18 17 16 26 26 C 1.38605 * 119.97986 * 0.25022 * 14 12 11 27 27 H 0.96998 * 120.00795 * 0.02562 * 1 2 3 28 28 H 1.07993 * 119.99766 * 0.02562 * 10 9 7 29 29 H 1.08005 * 119.83235 * 179.97438 * 11 10 9 30 30 H 1.08002 * 125.95093 * 359.96075 * 16 15 14 31 31 H 1.09003 * 109.46621 * 184.69542 * 19 18 17 32 32 H 1.08997 * 109.47002 * 64.69403 * 19 18 17 33 33 H 1.07996 * 122.54012 * 0.02562 * 21 20 19 34 34 H 1.07998 * 122.53454 * 180.19960 * 22 21 20 35 35 H 1.07998 * 125.20064 * 179.79033 * 23 22 21 36 36 H 1.07994 * 126.19748 * 180.24801 * 25 18 17 37 37 H 1.08001 * 120.16558 * 179.72691 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.0962 1.6966 -1.2125 5 1 1.2775 2.7465 0.0006 6 1 3.0963 1.6965 1.2125 7 6 2.0082 -1.2114 -0.0005 8 1 3.0494 -1.2339 0.2851 9 6 1.3522 -2.4061 -0.3750 10 6 1.8278 -3.6489 0.0864 11 6 1.1873 -4.8098 -0.2804 12 6 0.0716 -4.7647 -1.1042 13 9 -0.5492 -5.9110 -1.4584 14 6 -0.4130 -3.5373 -1.5707 15 6 -1.6070 -3.4971 -2.4524 16 6 -2.7430 -2.6830 -2.2782 17 7 -3.5719 -2.9274 -3.2584 18 7 -3.0072 -3.9066 -4.0847 19 6 -3.6168 -4.4662 -5.2937 20 6 -4.9790 -5.0176 -4.9603 21 6 -6.1202 -4.3287 -5.0084 22 6 -7.2508 -5.0478 -4.6606 23 6 -7.0265 -6.3182 -4.3216 24 16 -5.3065 -6.6658 -4.4413 25 6 -1.8029 -4.2415 -3.5788 26 6 0.2255 -2.3599 -1.2141 27 1 -0.4851 0.8400 -0.0004 28 1 2.6954 -3.6906 0.7281 29 1 1.5546 -5.7614 0.0747 30 1 -2.8996 -1.9761 -1.4769 31 1 -2.9860 -5.2660 -5.6817 32 1 -3.7156 -3.6838 -6.0462 33 1 -6.1596 -3.2894 -5.2994 34 1 -8.2390 -4.6122 -4.6602 35 1 -7.7851 -7.0253 -4.0200 36 1 -1.1177 -4.9676 -3.9906 37 1 -0.1433 -1.4115 -1.5760 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242093629.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:10 Heat of formation + Delta-G solvation = 70.962829 kcal Electronic energy + Delta-G solvation = -23830.903248 eV Core-core repulsion = 20194.179606 eV Total energy + Delta-G solvation = -3636.723642 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.074 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.20790 -42.07479 -39.12072 -38.77467 -35.52436 -34.88613 -32.72315 -31.24890 -31.15123 -29.24432 -27.05939 -26.87250 -24.25191 -23.54506 -22.87977 -21.68561 -21.14133 -20.24719 -19.18441 -18.28457 -17.91546 -17.64491 -17.04739 -16.65476 -16.33437 -15.98287 -15.76186 -15.59828 -15.20678 -14.67739 -14.40805 -14.11119 -13.89357 -13.82559 -13.72167 -13.62122 -13.57868 -13.33637 -13.00172 -12.73560 -12.66567 -12.46216 -12.22204 -11.86128 -11.74862 -11.69969 -11.26354 -10.93953 -10.38038 -9.96067 -9.77650 -9.44740 -9.23331 -8.84663 -8.57055 -6.30315 -0.11409 0.59001 0.66676 0.92226 1.00780 1.05552 1.42698 1.50389 1.50916 1.54789 1.93561 1.97544 2.23393 2.70520 3.44055 3.64284 3.72174 3.96258 4.02406 4.10316 4.19007 4.31494 4.33812 4.43598 4.58649 4.64838 4.75450 4.90961 4.94935 5.09896 5.13576 5.27231 5.29368 5.34709 5.49549 5.54641 5.67977 5.86230 5.98059 6.06461 6.10676 6.32764 6.64394 6.71639 6.92521 6.98130 8.33442 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.018212 B = 0.003062 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.055738 B = 9143.040192 C =10261.228902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.038 3.962 3 Si 0.979 3.021 4 H -0.262 1.262 5 H -0.270 1.270 6 H -0.259 1.259 7 C -0.489 4.489 8 H 0.082 0.918 9 C 0.077 3.923 10 C -0.218 4.218 11 C -0.115 4.115 12 C -0.048 4.048 13 F -0.165 7.165 14 C -0.021 4.021 15 C -0.203 4.203 16 C 0.055 3.945 17 N -0.303 5.303 18 N -0.365 5.365 19 C 0.202 3.798 20 C -0.218 4.218 21 C -0.106 4.106 22 C -0.148 4.148 23 C -0.203 4.203 24 S 0.089 5.911 25 C 0.073 3.927 26 C -0.147 4.147 27 H 0.289 0.711 28 H 0.114 0.886 29 H 0.128 0.872 30 H 0.178 0.822 31 H 0.130 0.870 32 H 0.120 0.880 33 H 0.146 0.854 34 H 0.162 0.838 35 H 0.188 0.812 36 H 0.192 0.808 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.472 -7.448 -11.170 17.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.178 4.178 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.195 1.195 6 H -0.183 1.183 7 C -0.518 4.518 8 H 0.100 0.900 9 C 0.075 3.925 10 C -0.238 4.238 11 C -0.134 4.134 12 C -0.068 4.068 13 F -0.145 7.145 14 C -0.024 4.024 15 C -0.214 4.214 16 C -0.131 4.131 17 N -0.124 5.124 18 N -0.148 5.148 19 C 0.081 3.919 20 C -0.335 4.335 21 C -0.138 4.138 22 C -0.178 4.178 23 C -0.339 4.339 24 S 0.353 5.647 25 C -0.074 4.074 26 C -0.166 4.166 27 H 0.100 0.900 28 H 0.132 0.868 29 H 0.146 0.854 30 H 0.195 0.805 31 H 0.148 0.852 32 H 0.138 0.862 33 H 0.164 0.836 34 H 0.180 0.820 35 H 0.205 0.795 36 H 0.209 0.791 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.031 -8.410 -11.582 18.071 hybrid contribution 0.153 1.570 0.544 1.668 sum -10.878 -6.841 -11.038 16.940 Atomic orbital electron populations 1.69858 1.08875 1.30781 1.34507 1.26710 0.95466 1.04372 0.91272 0.85286 0.78821 0.75830 0.80043 1.18592 1.19461 1.18317 1.19794 0.98547 0.92098 1.41373 0.89983 1.17940 0.91921 0.93254 0.89425 1.21049 1.04241 0.91899 1.06602 1.20705 0.95165 0.98956 0.98576 1.17432 0.99038 0.80591 1.09725 1.91267 1.82859 1.48617 1.91740 1.17984 0.94289 0.91999 0.98083 1.18983 0.97381 1.05222 0.99842 1.24008 0.91829 0.99496 0.97770 1.77089 1.22290 1.08223 1.04830 1.48707 1.13323 1.30673 1.22068 1.20346 0.89470 0.99420 0.82688 1.24512 0.98959 0.97915 1.12141 1.20408 0.91404 1.01357 1.00614 1.20463 1.00807 0.93799 1.02779 1.26019 0.98362 1.01348 1.08144 1.84421 1.03631 1.10514 1.66171 1.22719 0.89322 1.00187 0.95126 1.21168 0.98957 0.95696 1.00814 0.89979 0.86795 0.85415 0.80455 0.85209 0.86238 0.83604 0.82006 0.79474 0.79071 0.86996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.03 10.96 21.82 0.24 -40.79 16 2 C 0.04 1.84 5.13 85.24 0.44 2.28 16 3 Si 0.98 36.90 29.59 68.60 2.03 38.93 16 4 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 5 H -0.27 -9.73 7.11 99.48 0.71 -9.03 16 6 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 7 C -0.49 -25.23 9.04 23.43 0.21 -25.01 16 8 H 0.08 4.03 7.91 -2.91 -0.02 4.00 16 9 C 0.08 4.03 5.57 -21.31 -0.12 3.91 16 10 C -0.22 -10.36 9.78 22.75 0.22 -10.14 16 11 C -0.12 -5.11 9.99 22.24 0.22 -4.89 16 12 C -0.05 -2.20 7.26 22.81 0.17 -2.04 16 13 F -0.17 -7.16 16.33 44.97 0.73 -6.43 16 14 C -0.02 -1.01 5.75 -20.04 -0.12 -1.12 16 15 C -0.20 -8.47 5.36 -20.33 -0.11 -8.58 16 16 C 0.05 2.22 11.93 85.50 1.02 3.24 16 17 N -0.30 -11.04 12.37 -56.46 -0.70 -11.74 16 18 N -0.37 -11.23 3.66 -350.95 -1.28 -12.51 16 19 C 0.20 4.26 6.99 85.63 0.60 4.86 16 20 C -0.22 -4.80 5.94 24.59 0.15 -4.66 16 21 C -0.11 -2.22 10.05 21.22 0.21 -2.00 16 22 C -0.15 -2.70 10.18 21.22 0.22 -2.48 16 23 C -0.20 -3.60 11.23 66.72 0.75 -2.85 16 24 S 0.09 1.87 23.33 -56.49 -1.32 0.55 16 25 C 0.07 2.50 10.77 83.81 0.90 3.40 16 26 C -0.15 -7.55 8.35 22.92 0.19 -7.35 16 27 H 0.29 13.27 8.30 -92.71 -0.77 12.50 16 28 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 29 H 0.13 4.84 8.06 -2.91 -0.02 4.82 16 30 H 0.18 7.15 8.06 -2.91 -0.02 7.12 16 31 H 0.13 2.02 8.07 -2.39 -0.02 2.00 16 32 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 34 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 35 H 0.19 2.28 8.06 -2.91 -0.02 2.25 16 36 H 0.19 5.53 8.06 -2.91 -0.02 5.50 16 37 H 0.11 6.04 6.17 -2.91 -0.02 6.02 16 Total: -1.00 -61.78 345.88 5.77 -56.01 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: 1.11 Total: 29.42 kcal Atomic # 6 Polarization: -58.40 SS G_CDS: 4.95 Total: -53.45 kcal Atomic # 7 Polarization: -63.29 SS G_CDS: -1.74 Total: -65.03 kcal Atomic # 9 Polarization: -7.16 SS G_CDS: 0.73 Total: -6.43 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 2.03 Total: 38.93 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -1.32 Total: 0.55 kcal Total: -61.78 5.77 -56.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242093629.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.973 kcal (2) G-P(sol) polarization free energy of solvation -61.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds