Wall clock time and date at job start Tue Mar 31 2020 15:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30855 * 1 3 3 Si 1.86798 * 120.00098 * 2 1 4 4 H 1.48499 * 109.47327 * 274.86824 * 3 2 1 5 5 H 1.48494 * 109.46820 * 34.87111 * 3 2 1 6 6 H 1.48503 * 109.46725 * 154.87071 * 3 2 1 7 7 C 1.39920 * 119.99720 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99976 * 199.62122 * 7 2 1 9 9 C 1.41308 * 120.00291 * 19.34784 * 7 2 1 10 10 C 1.40545 * 120.21038 * 216.43994 * 9 7 2 11 11 C 1.38609 * 119.66302 * 179.74518 * 10 9 7 12 12 C 1.48493 * 119.96003 * 180.24864 * 11 10 9 13 13 C 1.40840 * 126.22312 * 0.33130 * 12 11 10 14 14 N 1.30670 * 108.10605 * 179.97438 * 13 12 11 15 15 N 1.40018 * 108.52375 * 359.97438 * 14 13 12 16 16 C 1.46498 * 125.89722 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47301 * 305.02329 * 16 15 14 18 18 C 1.33387 * 125.19925 * 89.71896 * 17 16 15 19 19 C 1.38427 * 114.92167 * 179.86016 * 18 17 16 20 20 C 1.33387 * 114.91587 * 0.43016 * 19 18 17 21 21 S 1.75877 * 125.20661 * 270.02932 * 17 16 15 22 22 C 1.34846 * 108.20309 * 359.77034 * 15 14 13 23 23 C 1.39788 * 120.07923 * 0.55695 * 11 10 9 24 24 C 1.38252 * 120.42221 * 359.69511 * 23 11 10 25 25 C 1.38056 * 120.34320 * 0.02562 * 24 23 11 26 26 F 1.35096 * 120.04713 * 180.02562 * 25 24 23 27 27 H 0.96997 * 119.99937 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.16621 * 0.02562 * 10 9 7 29 29 H 1.08004 * 125.94371 * 359.97438 * 13 12 11 30 30 H 1.08998 * 109.47309 * 65.02978 * 16 15 14 31 31 H 1.09002 * 109.47027 * 185.02546 * 16 15 14 32 32 H 1.08005 * 122.54375 * 0.02562 * 18 17 16 33 33 H 1.07996 * 122.54179 * 180.20500 * 19 18 17 34 34 H 1.08005 * 125.20403 * 179.78451 * 20 19 18 35 35 H 1.07996 * 126.19521 * 180.22591 * 22 15 14 36 36 H 1.07994 * 119.78718 * 179.72149 * 23 11 10 37 37 H 1.08002 * 119.82937 * 180.02562 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.3872 2.1058 -1.3950 5 1 1.4953 2.6206 0.8004 6 1 3.5878 1.4125 0.5946 7 6 2.0081 -1.2118 -0.0005 8 1 3.0411 -1.2391 0.3135 9 6 1.3614 -2.4008 -0.4065 10 6 1.6531 -3.6181 0.2326 11 6 1.0081 -4.7766 -0.1712 12 6 1.3072 -6.0654 0.5032 13 6 2.2121 -6.2588 1.5650 14 7 2.1981 -7.5256 1.8848 15 7 1.2908 -8.1859 1.0472 16 6 0.9789 -9.6170 1.0773 17 6 2.2517 -10.4116 0.9368 18 6 3.0216 -10.8154 1.9485 19 6 4.1430 -11.5366 1.5763 20 6 4.2884 -11.7106 0.2618 21 16 2.9532 -10.9418 -0.5863 22 6 0.7505 -7.2762 0.2113 23 6 0.0813 -4.7345 -1.2168 24 6 -0.2043 -3.5399 -1.8514 25 6 0.4236 -2.3745 -1.4595 26 9 0.1396 -1.2104 -2.0835 27 1 -0.4850 0.8400 0.0004 28 1 2.3727 -3.6498 1.0373 29 1 2.8129 -5.4932 2.0333 30 1 0.4986 -9.8644 2.0239 31 1 0.3065 -9.8596 0.2544 32 1 2.7864 -10.5986 2.9801 33 1 4.8486 -11.9255 2.2954 34 1 5.1017 -12.2425 -0.2096 35 1 0.0128 -7.4714 -0.5530 36 1 -0.4151 -5.6408 -1.5306 37 1 -0.9223 -3.5182 -2.6579 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242094485.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:00 Heat of formation + Delta-G solvation = 74.289172 kcal Electronic energy + Delta-G solvation = -23475.124232 eV Core-core repulsion = 19838.544831 eV Total energy + Delta-G solvation = -3636.579401 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.074 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.87382 -42.08805 -39.05060 -38.70232 -35.57414 -34.79399 -32.37794 -31.82174 -31.13331 -28.94649 -27.05923 -26.94587 -24.25337 -23.34892 -23.13011 -21.32487 -21.20629 -20.21642 -19.26059 -18.16348 -17.82582 -17.53377 -17.01343 -16.63253 -16.26139 -15.83366 -15.66536 -15.60670 -15.15249 -14.62417 -14.27211 -14.13334 -13.94144 -13.88567 -13.67249 -13.51027 -13.33365 -13.22664 -13.08043 -12.88820 -12.69063 -12.42600 -12.36001 -11.98948 -11.72241 -11.51590 -11.17170 -10.93540 -10.35834 -10.04565 -9.74614 -9.41184 -9.39914 -8.64868 -8.29766 -6.37486 -0.08483 0.52510 0.66682 0.93141 1.02911 1.11340 1.37395 1.46594 1.51035 1.54083 2.00729 2.10551 2.24355 2.85462 3.48300 3.62082 3.75970 3.97512 4.12054 4.21602 4.23736 4.30368 4.37959 4.51087 4.61379 4.66681 4.73564 4.82860 4.87009 4.98182 5.16408 5.23259 5.31891 5.44055 5.51537 5.55937 5.75928 5.82914 6.01744 6.06067 6.10593 6.34848 6.53915 6.76541 6.90991 6.98518 8.39072 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.024860 B = 0.002465 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.036907 B =11358.245547 C =11788.908454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.037 3.963 3 Si 0.975 3.025 4 H -0.269 1.269 5 H -0.268 1.268 6 H -0.254 1.254 7 C -0.513 4.513 8 H 0.080 0.920 9 C 0.060 3.940 10 C -0.195 4.195 11 C 0.010 3.990 12 C -0.201 4.201 13 C 0.049 3.951 14 N -0.308 5.308 15 N -0.367 5.367 16 C 0.202 3.798 17 C -0.216 4.216 18 C -0.108 4.108 19 C -0.149 4.149 20 C -0.206 4.206 21 S 0.095 5.905 22 C 0.074 3.926 23 C -0.192 4.192 24 C -0.135 4.135 25 C -0.008 4.008 26 F -0.161 7.161 27 H 0.285 0.715 28 H 0.108 0.892 29 H 0.184 0.816 30 H 0.118 0.882 31 H 0.135 0.865 32 H 0.145 0.855 33 H 0.160 0.840 34 H 0.186 0.814 35 H 0.208 0.792 36 H 0.140 0.860 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.630 -22.623 1.087 22.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.178 4.178 3 Si 0.797 3.203 4 H -0.195 1.195 5 H -0.192 1.192 6 H -0.177 1.177 7 C -0.543 4.543 8 H 0.098 0.902 9 C 0.057 3.943 10 C -0.214 4.214 11 C 0.008 3.992 12 C -0.212 4.212 13 C -0.137 4.137 14 N -0.129 5.129 15 N -0.149 5.149 16 C 0.081 3.919 17 C -0.334 4.334 18 C -0.140 4.140 19 C -0.179 4.179 20 C -0.342 4.342 21 S 0.359 5.641 22 C -0.073 4.073 23 C -0.211 4.211 24 C -0.154 4.154 25 C -0.029 4.029 26 F -0.140 7.140 27 H 0.095 0.905 28 H 0.126 0.874 29 H 0.201 0.799 30 H 0.136 0.864 31 H 0.153 0.847 32 H 0.163 0.837 33 H 0.177 0.823 34 H 0.203 0.797 35 H 0.224 0.776 36 H 0.158 0.842 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.450 -23.379 0.342 23.509 hybrid contribution 0.359 1.940 0.858 2.152 sum 2.809 -21.438 1.200 21.655 Atomic orbital electron populations 1.69839 1.09135 1.30508 1.35268 1.26589 0.95314 1.04260 0.91653 0.85287 0.79471 0.76587 0.79003 1.19452 1.19243 1.17743 1.19587 0.99151 0.92470 1.43049 0.90169 1.17842 0.91845 0.94403 0.90216 1.21043 1.05842 0.91898 1.02662 1.17949 0.95921 0.90418 0.94870 1.19045 1.05559 0.93376 1.03271 1.24114 0.98896 0.94054 0.96670 1.77134 1.12576 1.06477 1.16666 1.48730 1.31976 1.07812 1.26357 1.20355 0.92445 0.72318 1.06790 1.24545 1.03759 1.08614 0.96502 1.20395 0.94571 0.98426 1.00597 1.20458 0.99437 1.01861 0.96194 1.26013 1.03607 1.07018 0.97534 1.84356 1.19169 1.51525 1.09079 1.22915 0.99583 0.88164 0.96611 1.20572 1.03576 0.96827 1.00134 1.20839 1.00771 0.92102 1.01700 1.18336 1.05738 0.81022 0.97769 1.91254 1.92885 1.48717 1.81143 0.90479 0.87431 0.79941 0.86437 0.84731 0.83693 0.82300 0.79712 0.77569 0.84192 0.85895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.27 11.08 21.82 0.24 -46.03 16 2 C 0.04 2.00 4.52 85.25 0.39 2.39 16 3 Si 0.98 41.10 29.60 68.60 2.03 43.13 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 6 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 7 C -0.51 -28.74 8.92 23.43 0.21 -28.53 16 8 H 0.08 4.32 7.92 -2.91 -0.02 4.29 16 9 C 0.06 3.28 5.40 -21.28 -0.11 3.16 16 10 C -0.19 -9.38 9.31 22.92 0.21 -9.17 16 11 C 0.01 0.41 5.87 -20.08 -0.12 0.29 16 12 C -0.20 -6.92 6.04 -20.33 -0.12 -7.04 16 13 C 0.05 1.64 11.41 85.50 0.98 2.61 16 14 N -0.31 -9.48 12.37 -56.46 -0.70 -10.18 16 15 N -0.37 -9.06 3.66 -350.95 -1.28 -10.35 16 16 C 0.20 3.27 6.99 85.63 0.60 3.87 16 17 C -0.22 -3.93 5.94 24.59 0.15 -3.79 16 18 C -0.11 -1.94 10.05 21.22 0.21 -1.72 16 19 C -0.15 -2.36 10.18 21.22 0.22 -2.14 16 20 C -0.21 -3.14 11.23 66.72 0.75 -2.39 16 21 S 0.09 1.65 23.33 -56.49 -1.32 0.33 16 22 C 0.07 1.93 10.83 83.81 0.91 2.84 16 23 C -0.19 -7.55 9.57 22.65 0.22 -7.34 16 24 C -0.14 -6.10 9.99 22.23 0.22 -5.88 16 25 C -0.01 -0.44 6.69 22.91 0.15 -0.29 16 26 F -0.16 -9.22 14.23 44.97 0.64 -8.58 16 27 H 0.28 14.72 8.30 -92.71 -0.77 13.95 16 28 H 0.11 4.90 7.03 -2.91 -0.02 4.88 16 29 H 0.18 5.83 7.33 -2.91 -0.02 5.81 16 30 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.13 1.35 8.07 -2.39 -0.02 1.33 16 32 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 33 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 34 H 0.19 1.88 8.06 -2.91 -0.02 1.86 16 35 H 0.21 3.81 7.26 -2.91 -0.02 3.79 16 36 H 0.14 4.21 6.99 -2.91 -0.02 4.19 16 37 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -69.72 341.77 5.57 -64.15 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 1.11 Total: 20.65 kcal Atomic # 6 Polarization: -57.97 SS G_CDS: 4.85 Total: -53.12 kcal Atomic # 7 Polarization: -64.82 SS G_CDS: -1.74 Total: -66.56 kcal Atomic # 9 Polarization: -9.22 SS G_CDS: 0.64 Total: -8.58 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -1.32 Total: 0.33 kcal Total: -69.72 5.57 -64.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242094485.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.436 kcal (2) G-P(sol) polarization free energy of solvation -69.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds