Wall clock time and date at job start Tue Mar 31 2020 15:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86795 * 120.00066 * 2 1 4 4 H 1.48509 * 109.47005 * 239.99553 * 3 2 1 5 5 H 1.48497 * 109.47304 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47276 * 119.99944 * 3 2 1 7 7 C 1.40003 * 119.99628 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99544 * 164.28316 * 7 2 1 9 9 C 1.40871 * 120.00157 * 344.28808 * 7 2 1 10 10 C 1.40727 * 120.31686 * 333.28580 * 9 7 2 11 11 C 1.37599 * 119.84780 * 180.02562 * 10 9 7 12 12 F 1.35103 * 119.75066 * 180.02562 * 11 10 9 13 13 C 1.39205 * 120.50454 * 0.02562 * 11 10 9 14 14 C 1.37988 * 120.65179 * 359.67314 * 13 11 10 15 15 C 1.39154 * 120.13242 * 0.60677 * 14 13 11 16 16 C 1.47893 * 120.25489 * 179.69490 * 15 14 13 17 17 C 1.41119 * 126.37362 * 129.70056 * 16 15 14 18 18 N 1.30543 * 108.12126 * 180.02562 * 17 16 15 19 19 N 1.39947 * 108.86701 * 0.02562 * 18 17 16 20 20 C 1.46503 * 125.81488 * 179.97438 * 19 18 17 21 21 C 1.50701 * 109.46726 * 305.02171 * 20 19 18 22 22 C 1.33393 * 125.20447 * 90.00205 * 21 20 19 23 23 C 1.38425 * 114.92102 * 179.97438 * 22 21 20 24 24 C 1.33387 * 114.91812 * 0.24964 * 23 22 21 25 25 S 1.75883 * 109.59680 * 359.63174 * 24 23 22 26 26 C 1.34714 * 108.37832 * 0.22274 * 19 18 17 27 27 H 0.97001 * 119.99545 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.08170 * 359.97438 * 10 9 7 29 29 H 1.07999 * 119.67832 * 179.97438 * 13 11 10 30 30 H 1.07999 * 119.93663 * 180.29883 * 14 13 11 31 31 H 1.08006 * 125.94183 * 359.97438 * 17 16 15 32 32 H 1.08999 * 109.47209 * 185.02074 * 20 19 18 33 33 H 1.08999 * 109.47283 * 65.01890 * 20 19 18 34 34 H 1.08003 * 122.53750 * 359.97438 * 22 21 20 35 35 H 1.07994 * 122.53704 * 179.97438 * 23 22 21 36 36 H 1.08005 * 125.19862 * 179.75677 * 24 23 22 37 37 H 1.08001 * 126.31062 * 179.75097 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0082 -1.2125 0.0005 8 1 3.0579 -1.2301 -0.2528 9 6 1.3432 -2.4095 0.3314 10 6 0.2138 -2.3862 1.1707 11 6 -0.4279 -3.5612 1.4881 12 9 -1.5123 -3.5364 2.2935 13 6 0.0316 -4.7753 0.9856 14 6 1.1333 -4.8216 0.1560 15 6 1.8062 -3.6502 -0.1776 16 6 2.9913 -3.6975 -1.0611 17 6 3.2123 -2.9054 -2.2080 18 7 4.3673 -3.2400 -2.7161 19 7 4.9327 -4.2496 -1.9289 20 6 6.2255 -4.8973 -2.1640 21 6 6.2588 -5.4595 -3.5618 22 6 6.6807 -4.8042 -4.6444 23 6 6.6195 -5.5260 -5.8239 24 6 6.1430 -6.7657 -5.7001 25 16 5.7479 -7.0803 -4.0153 26 6 4.0832 -4.5283 -0.9211 27 1 -0.4849 0.8401 -0.0004 28 1 -0.1480 -1.4482 1.5654 29 1 -0.4821 -5.6896 1.2437 30 1 1.4770 -5.7695 -0.2311 31 1 2.5421 -2.1537 -2.5980 32 1 6.3638 -5.7043 -1.4444 33 1 7.0250 -4.1657 -2.0475 34 1 7.0426 -3.7874 -4.6036 35 1 6.9296 -5.1150 -6.7732 36 1 6.0205 -7.4695 -6.5102 37 1 4.2310 -5.2650 -0.1453 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242094522.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:02 Heat of formation + Delta-G solvation = 69.314521 kcal Electronic energy + Delta-G solvation = -23866.328210 eV Core-core repulsion = 20229.533092 eV Total energy + Delta-G solvation = -3636.795118 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.074 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.49892 -41.83373 -39.11796 -38.69005 -35.53950 -34.76836 -32.25468 -31.61354 -30.97569 -28.96057 -27.30403 -26.80447 -24.20308 -23.28251 -22.93578 -21.47348 -20.88901 -20.19137 -19.40446 -18.30777 -17.74560 -17.62056 -16.66739 -16.56435 -16.37379 -16.16612 -15.93817 -15.61448 -15.04579 -14.69980 -14.39469 -14.14198 -14.00342 -13.72582 -13.68413 -13.55172 -13.35156 -13.25784 -12.97855 -12.78370 -12.63834 -12.36569 -12.13024 -11.96615 -11.71194 -11.46419 -11.28442 -11.04568 -10.18186 -9.74841 -9.58362 -9.41074 -9.38681 -8.76456 -8.46206 -6.31884 -0.05362 0.65049 0.70924 0.98047 1.04811 1.18381 1.39128 1.48801 1.52358 1.62354 2.08042 2.13573 2.20061 2.71045 3.57192 3.65985 3.82335 3.87815 4.19071 4.20943 4.29122 4.41137 4.47579 4.60598 4.63131 4.69897 4.83427 4.94297 5.05109 5.16160 5.19439 5.23645 5.34365 5.40402 5.54160 5.71249 5.73133 5.86017 6.04455 6.09062 6.29684 6.37098 6.65664 6.91779 6.95047 6.99852 8.30887 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.013501 B = 0.003515 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.400717 B = 7963.181574 C = 9593.730644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.039 3.961 3 Si 0.971 3.029 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.262 1.262 7 C -0.460 4.460 8 H 0.082 0.918 9 C 0.118 3.882 10 C -0.224 4.224 11 C 0.085 3.915 12 F -0.170 7.170 13 C -0.272 4.272 14 C -0.054 4.054 15 C -0.135 4.135 16 C -0.165 4.165 17 C 0.059 3.941 18 N -0.318 5.318 19 N -0.367 5.367 20 C 0.204 3.796 21 C -0.213 4.213 22 C -0.111 4.111 23 C -0.149 4.149 24 C -0.206 4.206 25 S 0.098 5.902 26 C 0.049 3.951 27 H 0.289 0.711 28 H 0.106 0.894 29 H 0.124 0.876 30 H 0.132 0.868 31 H 0.165 0.835 32 H 0.132 0.868 33 H 0.112 0.888 34 H 0.142 0.858 35 H 0.159 0.841 36 H 0.187 0.813 37 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.199 -10.467 -7.582 19.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.177 4.177 3 Si 0.793 3.207 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.186 1.186 7 C -0.488 4.488 8 H 0.100 0.900 9 C 0.115 3.885 10 C -0.244 4.244 11 C 0.066 3.934 12 F -0.150 7.150 13 C -0.292 4.292 14 C -0.072 4.072 15 C -0.138 4.138 16 C -0.176 4.176 17 C -0.127 4.127 18 N -0.139 5.139 19 N -0.150 5.150 20 C 0.082 3.918 21 C -0.331 4.331 22 C -0.143 4.143 23 C -0.179 4.179 24 C -0.342 4.342 25 S 0.362 5.638 26 C -0.097 4.097 27 H 0.099 0.901 28 H 0.124 0.876 29 H 0.142 0.858 30 H 0.150 0.850 31 H 0.182 0.818 32 H 0.150 0.850 33 H 0.130 0.870 34 H 0.160 0.840 35 H 0.176 0.824 36 H 0.204 0.796 37 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 14.356 -11.411 -7.743 19.906 hybrid contribution -0.608 2.159 0.076 2.244 sum 13.748 -9.252 -7.666 18.259 Atomic orbital electron populations 1.69869 1.08991 1.30700 1.34894 1.26709 0.95273 1.04301 0.91409 0.85398 0.78925 0.76351 0.80058 1.18435 1.19421 1.18606 1.19578 0.97498 0.91175 1.40596 0.90038 1.17579 0.89968 0.93057 0.87862 1.21139 1.02274 0.95562 1.05443 1.17985 0.85507 0.95924 0.93984 1.91313 1.53799 1.97678 1.72165 1.20491 1.03889 0.95095 1.09702 1.20705 0.93662 0.97166 0.95678 1.18267 0.99055 0.92909 1.03551 1.19017 0.97061 1.02394 0.99102 1.23885 0.94362 0.99338 0.95078 1.76972 1.11100 1.06927 1.18951 1.48505 1.16668 1.29116 1.20706 1.20276 0.81655 0.97539 0.92304 1.24557 1.10222 0.98578 0.99758 1.20379 1.01053 1.01173 0.91677 1.20436 1.03238 0.94222 1.00030 1.26002 1.06837 1.01755 0.99592 1.84265 1.64208 1.12382 1.02970 1.23197 0.90206 1.01695 0.94561 0.90068 0.87614 0.85799 0.85036 0.81756 0.84984 0.86992 0.84028 0.82353 0.79582 0.78207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.35 10.98 21.84 0.24 -42.11 16 2 C 0.04 1.92 5.17 85.27 0.44 2.36 16 3 Si 0.97 37.92 29.59 68.60 2.03 39.95 16 4 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 5 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 6 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 7 C -0.46 -23.42 7.73 23.34 0.18 -23.24 16 8 H 0.08 4.10 6.69 -2.91 -0.02 4.08 16 9 C 0.12 6.10 5.57 -21.13 -0.12 5.98 16 10 C -0.22 -11.93 8.63 22.73 0.20 -11.73 16 11 C 0.09 4.19 7.28 22.35 0.16 4.36 16 12 F -0.17 -8.18 17.26 44.97 0.78 -7.41 16 13 C -0.27 -11.76 10.01 22.44 0.22 -11.54 16 14 C -0.05 -2.20 9.69 22.43 0.22 -1.98 16 15 C -0.14 -6.11 5.82 -19.60 -0.11 -6.22 16 16 C -0.16 -6.56 4.96 -20.09 -0.10 -6.66 16 17 C 0.06 2.40 10.37 85.59 0.89 3.28 16 18 N -0.32 -11.64 12.33 -56.34 -0.69 -12.33 16 19 N -0.37 -10.84 3.65 -349.77 -1.28 -12.12 16 20 C 0.20 4.11 6.99 85.63 0.60 4.71 16 21 C -0.21 -4.53 5.94 24.59 0.15 -4.39 16 22 C -0.11 -2.33 10.05 21.22 0.21 -2.12 16 23 C -0.15 -2.70 10.18 21.22 0.22 -2.49 16 24 C -0.21 -3.52 11.23 66.72 0.75 -2.77 16 25 S 0.10 1.89 23.33 -56.49 -1.32 0.58 16 26 C 0.05 1.54 11.39 84.17 0.96 2.50 16 27 H 0.29 13.67 8.30 -92.71 -0.77 12.90 16 28 H 0.11 5.99 6.25 -2.91 -0.02 5.97 16 29 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 30 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 31 H 0.17 7.08 7.95 -2.91 -0.02 7.05 16 32 H 0.13 1.83 8.06 -2.39 -0.02 1.81 16 33 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.14 2.88 8.06 -2.91 -0.02 2.85 16 35 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 36 H 0.19 2.16 8.06 -2.91 -0.02 2.13 16 37 H 0.20 4.71 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -62.47 343.18 5.73 -56.74 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: 1.11 Total: 26.65 kcal Atomic # 6 Polarization: -54.81 SS G_CDS: 4.86 Total: -49.95 kcal Atomic # 7 Polarization: -64.83 SS G_CDS: -1.73 Total: -66.56 kcal Atomic # 9 Polarization: -8.18 SS G_CDS: 0.78 Total: -7.41 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 2.03 Total: 39.95 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -1.32 Total: 0.58 kcal Total: -62.47 5.73 -56.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242094522.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.058 kcal (2) G-P(sol) polarization free energy of solvation -62.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds