Wall clock time and date at job start Tue Mar 31 2020 15:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86797 * 119.99829 * 2 1 4 4 H 1.48499 * 109.47223 * 275.41232 * 3 2 1 5 5 H 1.48502 * 109.47092 * 35.41496 * 3 2 1 6 6 H 1.48503 * 109.46864 * 155.41414 * 3 2 1 7 7 C 1.39918 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00528 * 341.72941 * 7 2 1 9 9 C 1.41424 * 119.99840 * 161.72576 * 7 2 1 10 10 C 1.40748 * 120.17600 * 330.18138 * 9 7 2 11 11 C 1.37904 * 119.95624 * 180.02562 * 10 9 7 12 12 F 1.35105 * 119.83568 * 179.97438 * 11 10 9 13 13 C 1.38667 * 120.32274 * 359.73967 * 11 10 9 14 14 C 1.39632 * 120.35594 * 0.51713 * 13 11 10 15 15 C 1.48490 * 119.98283 * 179.76706 * 14 13 11 16 16 C 1.40837 * 126.21719 * 179.72102 * 15 14 13 17 17 N 1.30680 * 108.09279 * 179.75262 * 16 15 14 18 18 N 1.40006 * 108.52282 * 0.38339 * 17 16 15 19 19 C 1.46506 * 125.89178 * 179.87648 * 18 17 16 20 20 C 1.50691 * 109.47319 * 304.68803 * 19 18 17 21 21 C 1.33387 * 125.20163 * 89.99572 * 20 19 18 22 22 C 1.38431 * 114.92224 * 179.97438 * 21 20 19 23 23 C 1.33397 * 114.91787 * 0.24854 * 22 21 20 24 24 S 1.75882 * 125.20328 * 269.96373 * 20 19 18 25 25 C 1.34818 * 108.21264 * 359.61005 * 18 17 16 26 26 C 1.38733 * 120.02797 * 359.48469 * 14 13 11 27 27 H 0.97004 * 120.00035 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.02039 * 359.97438 * 10 9 7 29 29 H 1.07995 * 119.82450 * 180.25676 * 13 11 10 30 30 H 1.08000 * 125.95848 * 0.02562 * 16 15 14 31 31 H 1.09000 * 109.46591 * 184.68601 * 19 18 17 32 32 H 1.09004 * 109.47172 * 64.69290 * 19 18 17 33 33 H 1.07996 * 122.54588 * 359.97438 * 21 20 19 34 34 H 1.07997 * 122.54495 * 179.97438 * 22 21 20 35 35 H 1.08001 * 125.20097 * 179.74971 * 23 22 21 36 36 H 1.08002 * 126.19697 * 180.26891 * 25 18 17 37 37 H 1.08007 * 120.15433 * 180.23942 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3754 2.1125 -1.3938 5 1 1.5016 2.6169 0.8113 6 1 3.5924 1.4098 0.5825 7 6 2.0079 -1.2117 -0.0005 8 1 1.5088 -2.1237 0.2923 9 6 3.3686 -1.2424 -0.3846 10 6 3.8620 -0.3100 -1.3163 11 6 5.1896 -0.3444 -1.6880 12 9 5.6604 0.5515 -2.5830 13 6 6.0446 -1.2909 -1.1440 14 6 5.5681 -2.2256 -0.2227 15 6 6.4898 -3.2388 0.3507 16 6 6.1530 -4.2340 1.2887 17 7 7.2280 -4.9318 1.5437 18 7 8.2867 -4.4086 0.7917 19 6 9.6658 -4.9031 0.7901 20 6 10.1967 -4.9152 2.2003 21 6 10.1024 -5.9402 3.0486 22 6 10.6656 -5.7205 4.2940 23 6 11.2127 -4.5150 4.4586 24 16 11.0363 -3.5803 2.9791 25 6 7.8168 -3.3750 0.0648 26 6 4.2352 -2.2044 0.1617 27 1 -0.4850 0.8401 -0.0004 28 1 3.2011 0.4314 -1.7405 29 1 7.0837 -1.3079 -1.4377 30 1 5.1755 -4.3954 1.7187 31 1 10.2849 -4.2507 0.1743 32 1 9.6886 -5.9146 0.3845 33 1 9.6230 -6.8711 2.7841 34 1 10.6585 -6.4667 5.0747 35 1 11.6924 -4.1671 5.3615 36 1 8.3873 -2.7655 -0.6204 37 1 3.8653 -2.9240 0.8771 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242095474.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:14 Heat of formation + Delta-G solvation = 81.999601 kcal Electronic energy + Delta-G solvation = -23447.992735 eV Core-core repulsion = 19811.747683 eV Total energy + Delta-G solvation = -3636.245052 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.074 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -47.92681 -40.97909 -38.15263 -37.52892 -34.18139 -33.56513 -31.41496 -30.29575 -29.79189 -28.02977 -26.15818 -25.37403 -23.48225 -22.34748 -21.40053 -20.06244 -19.90675 -19.49567 -17.93101 -17.22424 -16.73480 -15.99304 -15.88883 -15.28243 -14.88913 -14.81286 -14.62770 -14.48594 -14.07603 -13.74522 -13.19360 -13.10164 -13.03556 -12.88684 -12.76947 -12.53793 -12.04195 -11.94107 -11.86346 -11.47960 -11.03707 -11.01117 -10.81827 -10.61157 -10.32228 -9.98768 -9.80581 -9.30719 -9.27768 -9.05793 -8.73271 -8.71062 -7.66558 -7.09594 -7.03237 -4.61385 0.62128 1.33382 1.70968 1.81238 2.32081 2.38395 2.43957 2.82451 3.09201 3.17998 3.27095 3.45934 3.94606 4.27422 4.44423 4.46860 4.79020 4.95647 5.03810 5.15939 5.24948 5.27509 5.32094 5.36228 5.75361 5.83187 5.91838 5.99316 6.01853 6.11953 6.19222 6.35810 6.43188 6.74740 6.83168 6.99089 7.12138 7.34556 7.37172 7.54809 7.69365 7.88716 8.02284 8.25379 8.51066 8.69460 9.97684 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.019095 B = 0.002729 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.970142 B =10259.108922 C =10619.287159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.086 3.914 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.243 1.243 7 C -0.440 4.440 8 H 0.096 0.904 9 C 0.114 3.886 10 C -0.279 4.279 11 C 0.135 3.865 12 F -0.164 7.164 13 C -0.273 4.273 14 C 0.047 3.953 15 C -0.170 4.170 16 C 0.065 3.935 17 N -0.294 5.294 18 N -0.377 5.377 19 C 0.212 3.788 20 C -0.203 4.203 21 C -0.100 4.100 22 C -0.139 4.139 23 C -0.206 4.206 24 S 0.109 5.891 25 C 0.055 3.945 26 C -0.202 4.202 27 H 0.287 0.713 28 H 0.110 0.890 29 H 0.103 0.897 30 H 0.186 0.814 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.164 0.836 36 H 0.173 0.827 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.690 -8.173 5.039 21.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.134 4.134 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.166 1.166 7 C -0.468 4.468 8 H 0.114 0.886 9 C 0.111 3.889 10 C -0.299 4.299 11 C 0.116 3.884 12 F -0.143 7.143 13 C -0.294 4.294 14 C 0.045 3.955 15 C -0.181 4.181 16 C -0.122 4.122 17 N -0.113 5.113 18 N -0.160 5.160 19 C 0.089 3.911 20 C -0.321 4.321 21 C -0.131 4.131 22 C -0.169 4.169 23 C -0.342 4.342 24 S 0.372 5.628 25 C -0.090 4.090 26 C -0.222 4.222 27 H 0.098 0.902 28 H 0.128 0.872 29 H 0.121 0.879 30 H 0.203 0.797 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.160 0.840 34 H 0.159 0.841 35 H 0.182 0.818 36 H 0.190 0.810 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 20.505 -7.620 5.241 22.494 hybrid contribution -0.499 0.310 -0.145 0.605 sum 20.006 -7.310 5.096 21.900 Atomic orbital electron populations 1.69692 1.08119 1.30523 1.34040 1.26172 0.94726 1.01849 0.90686 0.86349 0.81444 0.79724 0.79105 1.19466 1.21563 1.16570 1.19499 0.92855 0.96284 1.38118 0.88597 1.17382 0.93004 0.89871 0.88665 1.21010 0.93938 1.07839 1.07128 1.17390 0.92737 0.88668 0.89640 1.91359 1.89378 1.66966 1.66556 1.20137 0.98360 1.02458 1.08406 1.17448 0.92017 0.91877 0.94112 1.19090 0.92871 1.01665 1.04429 1.24049 0.97745 0.93600 0.96819 1.77189 0.94344 1.22587 1.17227 1.48390 1.07782 1.25433 1.34361 1.19897 0.77696 1.01994 0.91524 1.24447 1.08658 0.98168 1.00839 1.20159 1.00109 1.00043 0.92831 1.20203 1.01011 0.97556 0.98157 1.25691 1.08266 0.98222 1.02057 1.84365 1.54812 1.17560 1.06030 1.22506 0.95513 0.92532 0.98414 1.21019 0.91702 1.04464 1.04986 0.90226 0.87188 0.87886 0.79717 0.87807 0.88101 0.84009 0.84119 0.81816 0.81022 0.87369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.82 13.93 55.55 0.77 -20.05 16 2 C 0.09 2.20 5.40 -17.35 -0.09 2.11 16 3 Si 0.91 20.74 24.52 -169.99 -4.17 16.57 16 4 H -0.27 -6.08 6.71 56.52 0.38 -5.70 16 5 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.24 -5.71 6.86 56.52 0.39 -5.32 16 7 C -0.44 -11.48 9.57 -37.74 -0.36 -11.84 16 8 H 0.10 2.58 8.06 -52.48 -0.42 2.15 16 9 C 0.11 2.81 5.10 -106.88 -0.55 2.27 16 10 C -0.28 -6.81 7.14 -38.76 -0.28 -7.09 16 11 C 0.13 3.07 7.28 -39.55 -0.29 2.78 16 12 F -0.16 -3.58 17.26 2.25 0.04 -3.54 16 13 C -0.27 -5.65 9.55 -38.90 -0.37 -6.02 16 14 C 0.05 0.96 5.87 -104.97 -0.62 0.34 16 15 C -0.17 -2.94 6.04 -105.34 -0.64 -3.58 16 16 C 0.06 1.06 11.41 -17.06 -0.19 0.87 16 17 N -0.29 -4.59 12.37 30.80 0.38 -4.21 16 18 N -0.38 -5.07 3.66 -62.28 -0.23 -5.29 16 19 C 0.21 2.02 6.99 -5.19 -0.04 1.98 16 20 C -0.20 -2.06 5.94 -36.01 -0.21 -2.27 16 21 C -0.10 -0.97 10.05 -41.21 -0.41 -1.39 16 22 C -0.14 -1.23 10.18 -41.20 -0.42 -1.65 16 23 C -0.21 -1.80 11.23 29.04 0.33 -1.47 16 24 S 0.11 1.05 23.33 -107.50 -2.51 -1.45 16 25 C 0.05 0.79 10.82 -16.89 -0.18 0.61 16 26 C -0.20 -4.48 9.32 -38.54 -0.36 -4.84 16 27 H 0.29 6.77 8.30 -40.82 -0.34 6.43 16 28 H 0.11 2.72 4.72 -52.49 -0.25 2.47 16 29 H 0.10 1.84 6.99 -52.49 -0.37 1.48 16 30 H 0.19 2.72 7.34 -52.49 -0.39 2.33 16 31 H 0.10 0.73 8.07 -51.93 -0.42 0.31 16 32 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 34 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.16 1.05 8.06 -52.49 -0.42 0.62 16 36 H 0.17 2.03 7.27 -52.49 -0.38 1.64 16 37 H 0.11 2.21 7.03 -52.48 -0.37 1.84 16 LS Contribution 337.70 15.07 5.09 5.09 Total: -1.00 -29.19 337.70 -8.76 -37.95 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -3.45 Total: 4.12 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: -4.68 Total: -29.18 kcal Atomic # 7 Polarization: -30.48 SS G_CDS: 0.93 Total: -29.55 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.04 Total: -3.54 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.17 Total: 16.57 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.51 Total: -1.45 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.19 -8.76 -37.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242095474.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.949 kcal (2) G-P(sol) polarization free energy of solvation -29.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds