Wall clock time and date at job start Tue Mar 31 2020 15:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99495 * 2 1 4 4 H 1.48503 * 109.47000 * 239.99790 * 3 2 1 5 5 H 1.48506 * 109.47326 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47185 * 119.99599 * 3 2 1 7 7 C 1.37873 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 0.02562 * 7 2 1 10 10 O 1.42905 * 109.46972 * 179.97438 * 9 7 2 11 11 C 1.35869 * 116.99685 * 179.97438 * 10 9 7 12 12 C 1.38846 * 119.92576 * 359.72619 * 11 10 9 13 13 C 1.37878 * 120.07604 * 179.76129 * 12 11 10 14 14 C 1.39484 * 119.92397 * 0.49238 * 13 12 11 15 15 C 1.48126 * 120.07924 * 179.78611 * 14 13 12 16 16 C 1.38668 * 120.25831 * 129.70469 * 15 14 13 17 17 C 1.38760 * 120.38387 * 179.75850 * 16 15 14 18 18 Cl 1.73603 * 119.63742 * 180.25648 * 17 16 15 19 19 C 1.37838 * 120.71794 * 0.50198 * 17 16 15 20 20 C 1.39242 * 120.12559 * 359.75608 * 19 17 16 21 21 N 1.37191 * 133.64960 * 180.02562 * 20 19 17 22 22 H 0.96996 * 125.96973 * 359.96135 * 21 20 19 23 23 N 1.40029 * 108.06542 * 180.02562 * 21 20 19 24 24 C 1.30202 * 109.71869 * 0.02562 * 23 21 20 25 25 C 1.40672 * 119.78482 * 0.02562 * 20 19 17 26 26 C 1.39494 * 119.84777 * 359.76411 * 14 13 12 27 27 C 1.37878 * 119.91956 * 359.97438 * 26 14 13 28 28 H 0.96992 * 120.00316 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 30 30 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 31 31 H 1.08004 * 119.96713 * 359.97438 * 12 11 10 32 32 H 1.08001 * 120.04192 * 180.25366 * 13 12 11 33 33 H 1.08000 * 119.80259 * 359.97070 * 16 15 14 34 34 H 1.08009 * 119.93675 * 179.78453 * 19 17 16 35 35 H 1.08000 * 125.64766 * 179.97438 * 24 23 21 36 36 H 1.07995 * 120.03684 * 180.02562 * 26 14 13 37 37 H 1.08004 * 119.96028 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2839 2.7466 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 8 2.1800 -3.5852 0.0005 11 6 1.6607 -4.8407 0.0011 12 6 0.2840 -5.0209 0.0073 13 6 -0.2463 -6.2936 0.0029 14 6 0.6019 -7.4009 0.0026 15 6 0.0359 -8.7698 0.0026 16 6 0.4757 -9.7078 -0.9191 17 6 -0.0491 -10.9923 -0.9182 18 17 0.5203 -12.1532 -2.0765 19 6 -1.0213 -11.3550 -0.0108 20 6 -1.4854 -10.4319 0.9226 21 7 -2.4181 -10.4882 1.9271 22 1 -2.9534 -11.2613 2.1648 23 7 -2.4636 -9.2340 2.5482 24 6 -1.6146 -8.4294 1.9762 25 6 -0.9592 -9.1274 0.9365 26 6 1.9846 -7.2162 0.0017 27 6 2.5081 -5.9407 0.0006 28 1 -0.4850 0.8400 -0.0004 29 1 0.6248 -2.5570 -0.8897 30 1 0.6243 -2.5567 0.8903 31 1 -0.3724 -4.1632 0.0122 32 1 -1.3173 -6.4332 0.0037 33 1 1.2336 -9.4379 -1.6396 34 1 -1.4235 -12.3573 -0.0236 35 1 -1.4398 -7.3998 2.2511 36 1 2.6442 -8.0714 0.0009 37 1 3.5785 -5.7969 0.0003 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243315410.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:00 Heat of formation + Delta-G solvation = 58.214168 kcal Electronic energy + Delta-G solvation = -23412.646592 eV Core-core repulsion = 19760.953631 eV Total energy + Delta-G solvation = -3651.692962 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.75095 -39.50569 -37.96831 -37.02591 -36.01847 -33.22713 -32.81248 -30.85252 -30.73693 -29.82777 -28.46234 -27.28839 -23.86259 -23.50243 -22.62902 -22.05415 -21.55451 -20.74466 -18.16604 -17.43784 -17.14765 -16.54230 -16.08584 -15.41650 -15.24945 -15.08261 -14.90963 -14.66968 -14.44408 -14.29483 -13.88208 -13.23829 -13.16302 -12.85664 -12.75963 -12.36821 -12.14843 -11.79769 -11.56557 -11.28923 -11.26390 -11.06931 -11.02808 -10.96195 -10.66932 -10.56401 -10.21847 -10.15099 -9.35172 -8.81456 -8.75505 -8.63556 -8.38759 -7.44141 -6.29095 -4.33282 0.35257 1.06010 1.66050 1.67579 1.81723 2.23854 2.51085 3.23620 3.26919 3.29865 3.36513 4.06788 4.08572 4.21376 4.45682 4.47506 4.63246 4.77449 4.81584 5.07619 5.08261 5.16729 5.22252 5.33809 5.52618 5.64608 5.76137 5.85150 5.93416 6.06969 6.10904 6.29481 6.35220 6.59680 6.67706 6.75827 6.90495 6.93786 7.07626 7.12993 7.28661 7.62923 7.89652 8.37892 8.78204 9.32257 10.81996 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.019910 B = 0.002421 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.016663 B =11561.295015 C =12587.445067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.061 3.939 3 Si 0.914 3.086 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.070 0.930 9 C 0.192 3.808 10 O -0.314 6.314 11 C 0.167 3.833 12 C -0.213 4.213 13 C -0.055 4.055 14 C -0.130 4.130 15 C 0.080 3.920 16 C -0.153 4.153 17 C 0.026 3.974 18 Cl -0.063 7.063 19 C -0.149 4.149 20 C 0.141 3.859 21 N -0.507 5.507 22 H 0.441 0.559 23 N -0.251 5.251 24 C 0.088 3.912 25 C -0.169 4.169 26 C -0.057 4.057 27 C -0.170 4.170 28 H 0.268 0.732 29 H 0.023 0.977 30 H 0.024 0.976 31 H 0.138 0.862 32 H 0.121 0.879 33 H 0.141 0.859 34 H 0.134 0.866 35 H 0.197 0.803 36 H 0.125 0.875 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.816 -23.622 -0.020 23.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.740 3.260 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.089 0.911 9 C 0.119 3.881 10 O -0.226 6.226 11 C 0.119 3.881 12 C -0.231 4.231 13 C -0.073 4.073 14 C -0.131 4.131 15 C 0.077 3.923 16 C -0.173 4.173 17 C -0.004 4.004 18 Cl -0.034 7.034 19 C -0.172 4.172 20 C 0.023 3.977 21 N -0.222 5.222 22 H 0.286 0.714 23 N -0.065 5.065 24 C -0.107 4.107 25 C -0.177 4.177 26 C -0.075 4.075 27 C -0.189 4.189 28 H 0.078 0.922 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.155 0.845 32 H 0.139 0.861 33 H 0.159 0.841 34 H 0.152 0.848 35 H 0.213 0.787 36 H 0.143 0.857 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.648 -23.622 0.838 23.917 hybrid contribution 0.360 0.447 -0.618 0.843 sum -3.288 -23.175 0.220 23.408 Atomic orbital electron populations 1.69927 1.06130 1.27823 1.49318 1.24928 0.95052 0.99551 0.94586 0.86301 0.79294 0.81367 0.79026 1.19824 1.20972 1.19814 1.20928 0.94264 0.88715 1.52564 0.91148 1.20697 0.88631 0.81706 0.97026 1.86137 1.39308 1.11880 1.85247 1.19445 0.91652 0.86605 0.90442 1.21424 0.94870 0.98353 1.08501 1.20927 0.98958 0.91045 0.96342 1.18321 0.93351 0.90564 1.10832 1.18133 0.91083 0.92347 0.90752 1.20872 1.03832 0.91007 1.01557 1.20433 0.96628 0.90770 0.92561 1.98383 1.88117 1.58785 1.58133 1.19679 1.01064 0.99522 0.96981 1.18499 0.92335 0.95193 0.91652 1.46092 1.35806 1.12021 1.28252 0.71363 1.76796 1.20842 0.90050 1.18819 1.24031 0.93166 1.00261 0.93284 1.18934 1.03325 0.93728 1.01672 1.20855 0.93399 0.96267 0.97018 1.20366 0.99837 0.90231 1.08420 0.92205 0.95901 0.95867 0.84453 0.86079 0.84136 0.84771 0.78671 0.85719 0.85250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.32 13.29 55.43 0.74 -24.58 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.91 20.86 29.54 -169.99 -5.02 15.84 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.53 -14.65 9.43 -34.44 -0.32 -14.97 16 8 H 0.07 1.93 7.81 -52.48 -0.41 1.52 16 9 C 0.19 4.90 4.49 36.01 0.16 5.06 16 10 O -0.31 -7.23 10.12 -19.33 -0.20 -7.42 16 11 C 0.17 3.17 6.69 -39.13 -0.26 2.91 16 12 C -0.21 -3.69 9.02 -39.49 -0.36 -4.04 16 13 C -0.05 -0.78 8.71 -39.25 -0.34 -1.12 16 14 C -0.13 -1.72 5.41 -104.91 -0.57 -2.29 16 15 C 0.08 0.95 5.49 -104.60 -0.57 0.37 16 16 C -0.15 -1.62 9.26 -39.23 -0.36 -1.99 16 17 C 0.03 0.25 6.31 -39.53 -0.25 0.00 16 18 Cl -0.06 -0.56 28.93 -51.86 -1.50 -2.06 16 19 C -0.15 -1.38 9.82 -39.35 -0.39 -1.76 16 20 C 0.14 1.48 7.32 -84.18 -0.62 0.86 16 21 N -0.51 -4.87 7.44 32.35 0.24 -4.63 16 22 H 0.44 2.77 8.96 -182.66 -1.64 1.13 16 23 N -0.25 -2.94 12.57 30.83 0.39 -2.55 16 24 C 0.09 1.02 11.17 -17.07 -0.19 0.83 16 25 C -0.17 -1.99 5.88 -106.72 -0.63 -2.61 16 26 C -0.06 -0.75 9.50 -39.25 -0.37 -1.13 16 27 C -0.17 -2.66 9.97 -39.49 -0.39 -3.06 16 28 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.02 0.61 7.67 -51.93 -0.40 0.21 16 30 H 0.02 0.61 7.64 -51.93 -0.40 0.22 16 31 H 0.14 2.53 6.28 -52.48 -0.33 2.20 16 32 H 0.12 1.51 7.81 -52.49 -0.41 1.10 16 33 H 0.14 1.37 8.03 -52.49 -0.42 0.94 16 34 H 0.13 0.93 8.06 -52.48 -0.42 0.50 16 35 H 0.20 1.98 7.65 -52.49 -0.40 1.57 16 36 H 0.12 1.32 8.04 -52.49 -0.42 0.90 16 37 H 0.13 1.87 8.06 -52.48 -0.42 1.44 16 LS Contribution 341.46 15.07 5.15 5.15 Total: -1.00 -29.90 341.46 -10.58 -40.48 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -4.81 Total: 1.13 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -5.56 Total: -21.35 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 1.36 Total: -31.76 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -0.20 Total: -7.42 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.50 Total: -2.06 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.90 -10.58 -40.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243315410.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.692 kcal (2) G-P(sol) polarization free energy of solvation -29.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds