Wall clock time and date at job start Tue Mar 31 2020 15:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99495 * 2 1 4 4 H 1.48503 * 109.47000 * 239.99790 * 3 2 1 5 5 H 1.48506 * 109.47326 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47185 * 119.99599 * 3 2 1 7 7 C 1.37873 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 0.02562 * 7 2 1 10 10 O 1.42905 * 109.46972 * 179.97438 * 9 7 2 11 11 C 1.35869 * 116.99685 * 179.97438 * 10 9 7 12 12 C 1.38846 * 119.92576 * 359.72619 * 11 10 9 13 13 C 1.37878 * 120.07604 * 179.76129 * 12 11 10 14 14 C 1.39484 * 119.92397 * 0.49238 * 13 12 11 15 15 C 1.48126 * 120.07924 * 179.78611 * 14 13 12 16 16 C 1.38668 * 120.25831 * 129.70469 * 15 14 13 17 17 C 1.38760 * 120.38387 * 179.75850 * 16 15 14 18 18 Cl 1.73603 * 119.63742 * 180.25648 * 17 16 15 19 19 C 1.37838 * 120.71794 * 0.50198 * 17 16 15 20 20 C 1.39242 * 120.12559 * 359.75608 * 19 17 16 21 21 N 1.37191 * 133.64960 * 180.02562 * 20 19 17 22 22 H 0.96996 * 125.96973 * 359.96135 * 21 20 19 23 23 N 1.40029 * 108.06542 * 180.02562 * 21 20 19 24 24 C 1.30202 * 109.71869 * 0.02562 * 23 21 20 25 25 C 1.40672 * 119.78482 * 0.02562 * 20 19 17 26 26 C 1.39494 * 119.84777 * 359.76411 * 14 13 12 27 27 C 1.37878 * 119.91956 * 359.97438 * 26 14 13 28 28 H 0.96992 * 120.00316 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 30 30 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 31 31 H 1.08004 * 119.96713 * 359.97438 * 12 11 10 32 32 H 1.08001 * 120.04192 * 180.25366 * 13 12 11 33 33 H 1.08000 * 119.80259 * 359.97070 * 16 15 14 34 34 H 1.08009 * 119.93675 * 179.78453 * 19 17 16 35 35 H 1.08000 * 125.64766 * 179.97438 * 24 23 21 36 36 H 1.07995 * 120.03684 * 180.02562 * 26 14 13 37 37 H 1.08004 * 119.96028 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2839 2.7466 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 8 2.1800 -3.5852 0.0005 11 6 1.6607 -4.8407 0.0011 12 6 0.2840 -5.0209 0.0073 13 6 -0.2463 -6.2936 0.0029 14 6 0.6019 -7.4009 0.0026 15 6 0.0359 -8.7698 0.0026 16 6 0.4757 -9.7078 -0.9191 17 6 -0.0491 -10.9923 -0.9182 18 17 0.5203 -12.1532 -2.0765 19 6 -1.0213 -11.3550 -0.0108 20 6 -1.4854 -10.4319 0.9226 21 7 -2.4181 -10.4882 1.9271 22 1 -2.9534 -11.2613 2.1648 23 7 -2.4636 -9.2340 2.5482 24 6 -1.6146 -8.4294 1.9762 25 6 -0.9592 -9.1274 0.9365 26 6 1.9846 -7.2162 0.0017 27 6 2.5081 -5.9407 0.0006 28 1 -0.4850 0.8400 -0.0004 29 1 0.6248 -2.5570 -0.8897 30 1 0.6243 -2.5567 0.8903 31 1 -0.3724 -4.1632 0.0122 32 1 -1.3173 -6.4332 0.0037 33 1 1.2336 -9.4379 -1.6396 34 1 -1.4235 -12.3573 -0.0236 35 1 -1.4398 -7.3998 2.2511 36 1 2.6442 -8.0714 0.0009 37 1 3.5785 -5.7969 0.0003 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243315410.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:59 Heat of formation + Delta-G solvation = 42.341567 kcal Electronic energy + Delta-G solvation = -23413.334880 eV Core-core repulsion = 19760.953631 eV Total energy + Delta-G solvation = -3652.381249 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.58839 -40.88153 -38.98578 -38.15539 -36.92769 -35.07635 -33.96523 -32.08269 -31.74685 -30.69232 -29.99907 -28.78078 -25.48725 -24.58543 -23.71266 -23.14218 -22.59662 -21.90880 -19.26691 -18.89901 -18.42781 -17.96743 -17.09791 -16.76923 -16.46234 -16.34081 -16.08884 -16.01206 -15.74738 -15.36545 -14.90687 -14.59935 -14.30386 -13.97931 -13.75009 -13.66994 -13.52142 -13.19093 -12.97652 -12.81700 -12.42392 -12.31552 -12.19906 -12.11794 -11.87068 -11.79503 -11.77281 -11.39438 -11.31134 -10.69848 -9.95841 -9.64009 -9.37237 -8.68158 -8.38361 -6.52481 -0.51714 0.18568 0.43187 0.62568 0.95869 1.39163 1.40511 1.44765 1.53187 1.78093 2.28047 2.48335 2.75376 2.85632 2.96702 3.32730 3.62978 3.81769 3.91378 3.93891 4.03560 4.06775 4.24890 4.37668 4.44842 4.56707 4.69670 4.74042 4.81525 4.99204 5.04959 5.07442 5.17431 5.20008 5.34159 5.43397 5.56192 5.56597 5.62361 5.84703 5.88894 6.23576 6.50112 6.51532 6.80613 7.19590 8.73440 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.019910 B = 0.002421 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.016663 B =11561.295015 C =12587.445067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.012 3.988 3 Si 0.985 3.015 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.559 4.559 8 H 0.067 0.933 9 C 0.212 3.788 10 O -0.336 6.336 11 C 0.120 3.880 12 C -0.223 4.223 13 C -0.052 4.052 14 C -0.107 4.107 15 C 0.061 3.939 16 C -0.145 4.145 17 C 0.019 3.981 18 Cl -0.051 7.051 19 C -0.133 4.133 20 C 0.135 3.865 21 N -0.495 5.495 22 H 0.455 0.545 23 N -0.267 5.267 24 C 0.077 3.923 25 C -0.181 4.181 26 C -0.048 4.048 27 C -0.165 4.165 28 H 0.274 0.726 29 H 0.002 0.998 30 H 0.004 0.996 31 H 0.114 0.886 32 H 0.138 0.862 33 H 0.151 0.849 34 H 0.161 0.839 35 H 0.200 0.800 36 H 0.161 0.839 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.368 -26.030 -0.314 26.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.187 4.187 3 Si 0.808 3.192 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.596 4.596 8 H 0.085 0.915 9 C 0.139 3.861 10 O -0.250 6.250 11 C 0.074 3.926 12 C -0.242 4.242 13 C -0.070 4.070 14 C -0.108 4.108 15 C 0.058 3.942 16 C -0.165 4.165 17 C -0.011 4.011 18 Cl -0.022 7.022 19 C -0.156 4.156 20 C 0.017 3.983 21 N -0.212 5.212 22 H 0.303 0.697 23 N -0.082 5.082 24 C -0.118 4.118 25 C -0.189 4.189 26 C -0.066 4.066 27 C -0.184 4.184 28 H 0.083 0.917 29 H 0.020 0.980 30 H 0.022 0.978 31 H 0.132 0.868 32 H 0.156 0.844 33 H 0.169 0.831 34 H 0.179 0.821 35 H 0.217 0.783 36 H 0.179 0.821 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.213 -26.078 0.548 26.281 hybrid contribution 0.126 0.854 -0.541 1.019 sum -3.087 -25.224 0.008 25.412 Atomic orbital electron populations 1.70038 1.07705 1.29087 1.49498 1.25932 0.95994 1.03299 0.93501 0.85199 0.78108 0.76446 0.79497 1.18904 1.19921 1.18891 1.21306 0.94417 0.90251 1.53634 0.91482 1.20182 0.88373 0.82549 0.95040 1.86044 1.38824 1.13015 1.87076 1.19837 0.92945 0.85740 0.94110 1.21313 0.94175 0.99037 1.09694 1.21044 1.00076 0.90074 0.95806 1.18526 0.93348 0.91153 1.07729 1.17964 0.92325 0.91666 0.92228 1.20994 1.03485 0.91071 1.00953 1.20469 0.96808 0.90782 0.93021 1.98394 1.87988 1.58176 1.57654 1.19971 0.99821 1.00307 0.95471 1.18628 0.92533 0.95021 0.92121 1.46097 1.35575 1.11893 1.27662 0.69662 1.76746 1.21100 0.90929 1.19401 1.24163 0.93427 1.00670 0.93586 1.19055 1.03487 0.94523 1.01816 1.21214 0.93913 0.96150 0.95283 1.20584 1.00141 0.90098 1.07552 0.91739 0.97973 0.97832 0.86829 0.84419 0.83142 0.82121 0.78297 0.82131 0.84125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.97 13.29 21.45 0.28 -53.68 16 2 C 0.01 0.69 5.46 84.65 0.46 1.16 16 3 Si 0.99 43.09 29.54 68.60 2.03 45.12 16 4 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 6 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 7 C -0.56 -32.42 9.43 25.60 0.24 -32.18 16 8 H 0.07 3.82 7.81 -2.91 -0.02 3.80 16 9 C 0.21 11.61 4.49 71.24 0.32 11.93 16 10 O -0.34 -16.50 10.12 -92.08 -0.93 -17.44 16 11 C 0.12 4.79 6.69 22.56 0.15 4.94 16 12 C -0.22 -8.24 9.02 22.33 0.20 -8.04 16 13 C -0.05 -1.49 8.71 22.48 0.20 -1.30 16 14 C -0.11 -2.68 5.41 -20.05 -0.11 -2.79 16 15 C 0.06 1.32 5.49 -19.85 -0.11 1.21 16 16 C -0.15 -2.65 9.26 22.50 0.21 -2.44 16 17 C 0.02 0.31 6.31 22.30 0.14 0.45 16 18 Cl -0.05 -0.74 28.93 -2.72 -0.08 -0.82 16 19 C -0.13 -1.98 9.82 22.42 0.22 -1.76 16 20 C 0.14 2.48 7.32 39.14 0.29 2.77 16 21 N -0.50 -8.40 7.44 -51.57 -0.38 -8.79 16 22 H 0.46 4.57 8.96 -213.37 -1.91 2.66 16 23 N -0.27 -5.92 12.57 -56.37 -0.71 -6.62 16 24 C 0.08 1.69 11.17 85.70 0.96 2.65 16 25 C -0.18 -3.92 5.88 -21.23 -0.12 -4.04 16 26 C -0.05 -1.17 9.50 22.49 0.21 -0.96 16 27 C -0.17 -5.15 9.97 22.33 0.22 -4.92 16 28 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 29 H 0.00 0.14 7.67 -2.38 -0.02 0.12 16 30 H 0.00 0.22 7.64 -2.39 -0.02 0.20 16 31 H 0.11 4.65 6.28 -2.91 -0.02 4.63 16 32 H 0.14 3.43 7.81 -2.91 -0.02 3.41 16 33 H 0.15 2.42 8.03 -2.91 -0.02 2.39 16 34 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 35 H 0.20 4.02 7.65 -2.91 -0.02 4.00 16 36 H 0.16 2.80 8.04 -2.91 -0.02 2.78 16 37 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -66.58 341.46 2.91 -63.67 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -0.78 Total: 11.88 kcal Atomic # 6 Polarization: -36.80 SS G_CDS: 3.48 Total: -33.32 kcal Atomic # 7 Polarization: -68.29 SS G_CDS: -0.81 Total: -69.10 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.93 Total: -17.44 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -0.08 Total: -0.82 kcal Total: -66.58 2.91 -63.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243315410.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.008 kcal (2) G-P(sol) polarization free energy of solvation -66.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds