Wall clock time and date at job start Tue Mar 31 2020 15:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31536 * 1 3 3 Si 1.86797 * 119.99786 * 2 1 4 4 H 1.48497 * 109.47462 * 240.00390 * 3 2 1 5 5 H 1.48505 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47197 * 119.99938 * 3 2 1 7 7 C 1.38684 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99699 * 179.97438 * 7 2 1 9 9 O 1.34800 * 120.00247 * 359.97438 * 7 2 1 10 10 C 1.35581 * 116.99945 * 185.21366 * 9 7 2 11 11 C 1.38790 * 120.15002 * 6.07608 * 10 9 7 12 12 C 1.38074 * 120.06128 * 179.97438 * 11 10 9 13 13 C 1.38529 * 120.38209 * 359.97438 * 12 11 10 14 14 C 1.37889 * 120.30824 * 0.02562 * 13 12 11 15 15 C 1.39559 * 119.92491 * 0.02562 * 14 13 12 16 16 C 1.47798 * 120.19011 * 179.97438 * 15 14 13 17 17 N 1.32869 * 120.93185 * 124.45299 * 16 15 14 18 18 C 1.32239 * 121.46853 * 179.76185 * 17 16 15 19 19 N 1.31232 * 123.01484 * 0.54145 * 18 17 16 20 20 C 1.33997 * 120.50310 * 359.73456 * 19 18 17 21 21 C 1.40319 * 121.98853 * 179.97438 * 20 19 18 22 22 F 1.35099 * 120.23817 * 0.02562 * 21 20 19 23 23 C 1.36690 * 119.51915 * 180.02562 * 21 20 19 24 24 F 1.35101 * 119.51937 * 180.02562 * 23 21 20 25 25 C 1.39456 * 120.96981 * 359.97438 * 23 21 20 26 26 C 1.36332 * 120.91228 * 0.02562 * 25 23 21 27 27 C 1.39945 * 119.57660 * 359.97438 * 26 25 23 28 28 H 0.97000 * 120.00161 * 359.97438 * 1 2 3 29 29 H 1.07999 * 119.97149 * 359.97438 * 11 10 9 30 30 H 1.07999 * 119.80800 * 179.70043 * 12 11 10 31 31 H 1.07998 * 119.84794 * 180.02562 * 13 12 11 32 32 H 1.07994 * 120.03948 * 180.02562 * 14 13 12 33 33 H 1.08005 * 118.48966 * 180.27320 * 18 17 16 34 34 H 1.07999 * 119.54232 * 180.02562 * 25 23 21 35 35 H 1.08005 * 120.20938 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6966 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6965 1.2125 7 6 2.0088 -1.2010 -0.0005 8 1 3.0888 -1.2010 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0690 -3.5030 0.1087 11 6 3.4355 -3.4295 0.3404 12 6 4.1813 -4.5861 0.4518 13 6 3.5739 -5.8256 0.3343 14 6 2.2174 -5.9167 0.1041 15 6 1.4514 -4.7559 -0.0118 16 6 -0.0029 -4.8467 -0.2591 17 7 -0.8722 -4.2561 0.5540 18 6 -2.1753 -4.3266 0.3402 19 7 -2.7000 -4.9827 -0.6680 20 6 -1.9149 -5.6199 -1.5473 21 6 -2.4425 -6.3310 -2.6359 22 9 -3.7786 -6.3903 -2.8265 23 6 -1.5947 -6.9631 -3.5019 24 9 -2.1027 -7.6473 -4.5503 25 6 -0.2131 -6.9114 -3.3199 26 6 0.3302 -6.2289 -2.2722 27 6 -0.5095 -5.5705 -1.3668 28 1 -0.4850 0.8400 0.0004 29 1 3.9159 -2.4667 0.4335 30 1 5.2452 -4.5241 0.6273 31 1 4.1655 -6.7247 0.4233 32 1 1.7483 -6.8852 0.0136 33 1 -2.8383 -3.8247 1.0294 34 1 0.4355 -7.4190 -4.0185 35 1 1.4019 -6.1959 -2.1423 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243583591.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:36 Heat of formation + Delta-G solvation = -16.908251 kcal Electronic energy + Delta-G solvation = -26771.271333 eV Core-core repulsion = 22564.524138 eV Total energy + Delta-G solvation = -4206.747194 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.52617 -48.49487 -41.13439 -39.16740 -37.31169 -36.67328 -34.17475 -32.50520 -31.45669 -30.17302 -29.74201 -28.98986 -25.59702 -24.96357 -24.32697 -22.78268 -21.73924 -21.08297 -19.16150 -18.38114 -18.18815 -17.72753 -16.98201 -16.46278 -16.29920 -16.08820 -15.34412 -15.04629 -14.85858 -14.78531 -14.38809 -14.34118 -14.11930 -13.85274 -13.74184 -13.55575 -12.97208 -12.79599 -12.69473 -11.98789 -11.86189 -11.74076 -11.58948 -11.14675 -11.06556 -11.02829 -10.67828 -10.63020 -10.53227 -9.67595 -9.12891 -9.02166 -8.92240 -8.55000 -8.12379 -7.45306 -6.63697 -4.21485 0.09935 0.61055 1.49061 2.05516 2.15848 2.78425 3.02786 3.04069 3.07335 3.50842 3.80398 4.05017 4.07437 4.25790 4.30930 4.35091 4.50057 4.70195 4.83243 4.89929 4.98020 5.14842 5.35826 5.44224 5.47539 5.60390 5.77375 5.82125 5.91145 5.96113 6.02809 6.36046 6.42700 6.52794 6.60934 6.80977 6.92667 7.09044 7.13259 7.24046 7.51402 7.77163 8.40350 8.79129 9.44917 10.51571 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.012530 B = 0.004348 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.170520 B = 6438.058740 C = 7642.390075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.045 3.955 3 Si 0.942 3.058 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.397 4.397 8 H 0.095 0.905 9 O -0.146 6.146 10 C 0.184 3.816 11 C -0.230 4.230 12 C -0.053 4.053 13 C -0.218 4.218 14 C -0.043 4.043 15 C -0.161 4.161 16 C 0.315 3.685 17 N -0.496 5.496 18 C 0.330 3.670 19 N -0.525 5.525 20 C 0.159 3.841 21 C 0.071 3.929 22 F -0.114 7.114 23 C 0.103 3.897 24 F -0.125 7.125 25 C -0.151 4.151 26 C -0.034 4.034 27 C -0.153 4.153 28 H 0.274 0.726 29 H 0.133 0.867 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.199 0.801 34 H 0.152 0.848 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.111 -11.246 -3.128 12.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.162 4.162 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.472 4.472 8 H 0.113 0.887 9 O -0.046 6.046 10 C 0.126 3.874 11 C -0.249 4.249 12 C -0.072 4.072 13 C -0.237 4.237 14 C -0.062 4.062 15 C -0.164 4.164 16 C 0.159 3.841 17 N -0.209 5.209 18 C 0.042 3.958 19 N -0.240 5.240 20 C 0.029 3.971 21 C 0.049 3.951 22 F -0.092 7.092 23 C 0.080 3.920 24 F -0.104 7.104 25 C -0.170 4.170 26 C -0.054 4.054 27 C -0.158 4.158 28 H 0.084 0.916 29 H 0.151 0.849 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.135 0.865 33 H 0.215 0.785 34 H 0.169 0.831 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.749 -10.552 -2.588 11.005 hybrid contribution 0.548 0.477 -0.714 1.019 sum 2.297 -10.075 -3.302 10.848 Atomic orbital electron populations 1.70034 1.06065 1.28259 1.43135 1.25361 0.95857 0.99031 0.95986 0.85757 0.78811 0.79434 0.79365 1.19323 1.20112 1.19240 1.21391 0.91931 0.80657 1.53242 0.88738 1.83999 1.34198 1.11378 1.74992 1.19182 0.90135 0.86898 0.91179 1.21156 0.93660 0.99426 1.10661 1.20930 0.98753 0.92207 0.95313 1.20484 0.94285 0.97136 1.11837 1.20680 0.93607 0.95385 0.96547 1.17264 0.88472 0.91974 1.18693 1.20334 0.93620 0.84266 0.85889 1.68696 1.03299 1.18790 1.30075 1.24997 0.89764 0.89637 0.91420 1.68733 1.38924 1.11399 1.04922 1.18435 0.89676 0.95256 0.93695 1.16798 0.78084 1.03491 0.96722 1.91526 1.28589 1.94628 1.94481 1.17375 0.92101 0.96238 0.86334 1.91536 1.87656 1.76936 1.54242 1.20759 0.91795 1.03605 1.00859 1.21043 1.01090 0.92072 0.91177 1.19335 0.93665 1.03495 0.99291 0.91605 0.84925 0.86945 0.86847 0.86546 0.78477 0.83075 0.82672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.53 13.67 55.48 0.76 -22.77 16 2 C 0.04 1.16 5.49 -17.51 -0.10 1.07 16 3 Si 0.94 19.33 29.55 -169.99 -5.02 14.30 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.40 -10.29 9.44 30.90 0.29 -10.00 16 8 H 0.10 2.22 5.30 -52.48 -0.28 1.95 16 9 O -0.15 -3.86 8.99 0.65 0.01 -3.86 16 10 C 0.18 4.06 6.65 -38.64 -0.26 3.81 16 11 C -0.23 -4.41 9.12 -39.44 -0.36 -4.76 16 12 C -0.05 -0.83 10.03 -39.53 -0.40 -1.22 16 13 C -0.22 -3.12 10.03 -39.60 -0.40 -3.51 16 14 C -0.04 -0.65 7.87 -39.22 -0.31 -0.96 16 15 C -0.16 -3.09 5.10 -104.76 -0.53 -3.63 16 16 C 0.32 6.22 5.95 -82.19 -0.49 5.73 16 17 N -0.50 -10.47 10.11 -10.84 -0.11 -10.58 16 18 C 0.33 6.22 12.22 -92.25 -1.13 5.10 16 19 N -0.52 -10.01 10.34 -12.61 -0.13 -10.14 16 20 C 0.16 2.89 6.62 -84.79 -0.56 2.33 16 21 C 0.07 1.16 7.31 -39.36 -0.29 0.88 16 22 F -0.11 -1.96 17.04 2.25 0.04 -1.92 16 23 C 0.10 1.43 7.24 -39.69 -0.29 1.15 16 24 F -0.13 -1.69 17.13 2.25 0.04 -1.65 16 25 C -0.15 -1.79 9.93 -39.81 -0.40 -2.19 16 26 C -0.03 -0.46 8.91 -39.63 -0.35 -0.81 16 27 C -0.15 -2.65 5.74 -106.59 -0.61 -3.26 16 28 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.13 2.53 5.72 -52.49 -0.30 2.23 16 30 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 31 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 32 H 0.12 1.46 7.79 -52.49 -0.41 1.06 16 33 H 0.20 3.07 8.06 -52.48 -0.42 2.65 16 34 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.16 1.86 6.11 -52.48 -0.32 1.54 16 LS Contribution 321.27 15.07 4.84 4.84 Total: -1.00 -30.38 321.27 -7.89 -38.26 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -2.13 Total: 3.82 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -6.17 Total: -10.30 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: 0.52 Total: -43.49 kcal Atomic # 8 Polarization: -3.86 SS G_CDS: 0.01 Total: -3.86 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.08 Total: -3.57 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.30 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.38 -7.89 -38.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243583591.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.353 kcal (2) G-P(sol) polarization free energy of solvation -30.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds